CF835856

Overview
NameCF835856
Unique NameCF835856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.404e-56
Identity = 109/230 (47.39%), Postives = 140/230 (60.87%), Query Frame = 3
Query:    6 MARRYDSNPFDEEE--VNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCI 689
            M R +D NPFDE+E  VNPFS    R                     VP A+          P  +    DA +DIP                     R++E D++R+EEA A+ G+ +++KNWPPFFPIIHHDIA EIP+H Q+LQY+AFA++LG+ LCL++N++A    WIKG GVKI+FLA IY + G P +YVLWYRPLYRA  T+SA+KFGWFF  YL+HIGFCI
Sbjct:    1 MNRHHDPNPFDEDEEIVNPFSKGGGR---------------------VPAAS---------RPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPLYRAMRTDSALKFGWFFFTYLIHIGFCI 200          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.697e-53
Identity = 105/227 (46.26%), Postives = 133/227 (58.59%), Query Frame = 3
Query:   18 YDSNPFDEEEV--NPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFER-DAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCI 689
            +D NPFDE     NPFS+                             +  +    P EPAGF   R DA +D+P                     +RRE D++R+EEA   AG+ +E+KNWPPFFPIIHHDIANEIP +LQ+LQY+AFA++LG+ LCL WN +AV   WIK    K++FLA IY + G+P +Y++WYRPLYRA  T SA  FGWFFL YL+HIGFCI
Sbjct:    3 HDPNPFDEGNADDNPFSNGG--------------------GGGGGGGSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMGDSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPANLQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATIYALLGIPLSYLIWYRPLYRAMRTNSAFSFGWFFLCYLIHIGFCI 209          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.276e-50
Identity = 88/160 (55.00%), Postives = 112/160 (70.00%), Query Frame = 3
Query:  213 APIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCIF 692
            A +DIP                     +RRE D+RR+EEA   AG+ +EEKNWPPFFPIIHHDIANEIP + Q+LQY+AFA++LG+ LCL WN +AV   WI+G   K++FLA IY + G+P +Y++WYRPLYRA  T+SA  FGWFFL Y+LHI FC+F
Sbjct:   59 ATVDIPLDNMSDSKGKGKELLQWEADLKRREADIRRREEALKSAGVPMEEKNWPPFFPIIHHDIANEIPANAQKLQYLAFASWLGIVLCLFWNFIAVIVCWIRGGDSKLFFLATIYGMLGMPLSYLMWYRPLYRAMRTDSAFSFGWFFLCYMLHIAFCVF 218          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM2_MOUSE (Secretory carrier-associated membrane protein 2 OS=Mus musculus GN=Scamp2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 61/234 (26.07%), Postives = 101/234 (43.16%), Query Frame = 3
Query:   18 YDSNPF-DEEEVNPFSDPAVR--XXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAA--ARAGIVLEEKNWPPF------FPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVK--IWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIG 680
            +D+NPF D  +VNPF DP+V                   TN+A+  PAT    +P P +PA      +     P                      R+  ++ RKE       A + + + NWPP        P  + D + EIP   QR+  + +  ++   + L  N++A   AW   +      + L+I++F+   P A++ WYRP+Y+AF ++++  F  FF  +   IG
Sbjct:    4 FDTNPFADPVDVNPFQDPSVTQLTNAPQSGLAEFNPFSETNAATTVPATQ---APGPSQPAVLQPSVEPAQPTPQAVAAAAQAGLLRQQEELD---RKAAELERKERELQNTAANLHVRDNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLA-CLAWFTSDAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIG 230          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM2_HUMAN (Secretory carrier-associated membrane protein 2 OS=Homo sapiens GN=SCAMP2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 62/237 (26.16%), Postives = 100/237 (42.19%), Query Frame = 3
Query:   18 YDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXXX--TTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAAR--AGIVLEEKNWPPF------FPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVK--IWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCI 689
            +D+NPF D  +VNPF DP+V                   TN+A+  P T     P   +PA      +     P                      R+  ++ RKE       A + + + NWPP        P  + D + EIP   QR+  + +  ++   + L  N++A   AW  G   K   + L+I++F+   P A++ WYRP+Y+AF ++++  F  FF  +   IG  I
Sbjct:    4 FDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQL---PGSSQPAVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELD---RKAAELERKERELQNTVANLHVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACL-AWFSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM1_MOUSE (Secretory carrier-associated membrane protein 1 OS=Mus musculus GN=Scamp1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 59/233 (25.32%), Postives = 98/233 (42.06%), Query Frame = 3
Query:   18 YDSNPFDEEEVN-PFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKE-EAAARAGIVLEEKNWPPF---FPI---IHHDIANEIPIHLQRL--------QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYL 668
            +DSNPF + ++N PF DP+V                 ++S + PP +    +    +PA      + P                         +  E D R +E +  ++ G    + NWPP    FP+    + D + +IP+  Q+          + A   +L +F CL W  V  + A   G       L+I++F+   P ++V WYRPLY AF ++S+ +F  FF  Y+
Sbjct:    4 FDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGSVKMPNVPNTQPAIMKPTEEHPAYTQITKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHG---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSSRAVDFG-------LSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYI 226          
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM1_PIG (Secretory carrier-associated membrane protein 1 OS=Sus scrofa GN=SCAMP1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 60/234 (25.64%), Postives = 100/234 (42.74%), Query Frame = 3
Query:   18 YDSNPFDEEEVN-PFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPH-EPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKE-EAAARAGIVLEEKNWPPF---FPI---IHHDIANEIPIHLQRL--------QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYL 668
            +DSNPF + ++N PF DP+V                 ++S + PP  N ++  +P  +PA      + P                         +  E D R +E +  ++ G    + NWPP    FP+    + D + +IP+  Q+          + A   +L +F CL W  V  +     G       L+I++F+   P ++V WYRPLY AF ++S+ +F  FF  Y+
Sbjct:    4 FDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPG-NVKMPNVPSTQPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHG---RKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCLAWFCVDPSRGVDFG-------LSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYI 226          
The following BLAST results are available for this feature:
BLAST of CF835856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SCAM4_ARATH8.404e-5647.39Secretory carrier-associated membrane protein 4 OS... [more]
SCAM6_ORYSJ8.697e-5346.26Secretory carrier-associated membrane protein 6 OS... [more]
SCAM5_ORYSJ5.276e-5055.00Secretory carrier-associated membrane protein 5 OS... [more]
SCAM2_MOUSE2.735e-1426.07Secretory carrier-associated membrane protein 2 OS... [more]
SCAM2_HUMAN1.773e-1326.16Secretory carrier-associated membrane protein 2 OS... [more]
SCAM1_MOUSE2.560e-1225.32Secretory carrier-associated membrane protein 1 OS... [more]
SCAM1_PIG4.367e-1225.64Secretory carrier-associated membrane protein 1 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835856 ID=CF835856; Name=CF835856; organism=Citrus sinensis; type=EST; length=692bp
TTGTGATGGCCCGTCGTTACGACAGCAATCCCTTCGATGAAGAGGAAGTG
AATCCTTTCTCCGACCCAGCTGTTAGGGGGAAAAGCTCGGGCCAATCGAG
GTTTGGTGGAGGTGGATTTTTTACAACAAACAGTGCAAGTGTTCCACCTG
CAACTAATTCAAGGCTTTCACCTCTTCCTCATGAACCAGCTGGTTTCAAT
TTTGAACGTGATGCGCCTATTGACATTCCTCTTGATACAGCTGCGGATTT
GAAGAAGAAAGAGAAGGAACTTCAAGCTAAGGAGGCTGAATTAAGAAGGC
GGGAGCAGGATGTAAGAAGGAAAGAAGAAGCTGCAGCACGAGCTGGAATT
GTTCTTGAGGAGAAAAACTGGCCACCATTTTTCCCCATTATTCATCATGA
CATTGCAAACGAAATACCAATTCATCTACAAAGGCTGCAATATGTTGCAT
TTGCAACATATTTAGGATTGTTTTTGTGTCTCCTGTGGAACATCGTAGCT
GTTACCACAGCATGGATCAAAGGCGAAGGTGTAAAAATCTGGTTTCTCGC
CATTATTTACTTCATAGCAGGAGTTCCAGGAGCTTATGTGCTGTGGTATC
GTCCACTCTATCGTGCTTTCANGACTGAAAGTGCAATGAAGTTTGGATGG
TTTTTCTTGTTTTACTTGCTCCACATTGGCTTTTGCATATTT
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