CF835856
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 8.404e-56 Identity = 109/230 (47.39%), Postives = 140/230 (60.87%), Query Frame = 3 Query: 6 MARRYDSNPFDEEE--VNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCI 689 M R +D NPFDE+E VNPFS R VP A+ P + DA +DIP R++E D++R+EEA A+ G+ +++KNWPPFFPIIHHDIA EIP+H Q+LQY+AFA++LG+ LCL++N++A WIKG GVKI+FLA IY + G P +YVLWYRPLYRA T+SA+KFGWFF YL+HIGFCI Sbjct: 1 MNRHHDPNPFDEDEEIVNPFSKGGGR---------------------VPAAS---------RPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPLYRAMRTDSALKFGWFFFTYLIHIGFCI 200
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 8.697e-53 Identity = 105/227 (46.26%), Postives = 133/227 (58.59%), Query Frame = 3 Query: 18 YDSNPFDEEEV--NPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFER-DAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCI 689 +D NPFDE NPFS+ + + P EPAGF R DA +D+P +RRE D++R+EEA AG+ +E+KNWPPFFPIIHHDIANEIP +LQ+LQY+AFA++LG+ LCL WN +AV WIK K++FLA IY + G+P +Y++WYRPLYRA T SA FGWFFL YL+HIGFCI Sbjct: 3 HDPNPFDEGNADDNPFSNGG--------------------GGGGGGGSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMGDSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPANLQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATIYALLGIPLSYLIWYRPLYRAMRTNSAFSFGWFFLCYLIHIGFCI 209
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 5.276e-50 Identity = 88/160 (55.00%), Postives = 112/160 (70.00%), Query Frame = 3 Query: 213 APIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCIF 692 A +DIP +RRE D+RR+EEA AG+ +EEKNWPPFFPIIHHDIANEIP + Q+LQY+AFA++LG+ LCL WN +AV WI+G K++FLA IY + G+P +Y++WYRPLYRA T+SA FGWFFL Y+LHI FC+F Sbjct: 59 ATVDIPLDNMSDSKGKGKELLQWEADLKRREADIRRREEALKSAGVPMEEKNWPPFFPIIHHDIANEIPANAQKLQYLAFASWLGIVLCLFWNFIAVIVCWIRGGDSKLFFLATIYGMLGMPLSYLMWYRPLYRAMRTDSAFSFGWFFLCYMLHIAFCVF 218
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM2_MOUSE (Secretory carrier-associated membrane protein 2 OS=Mus musculus GN=Scamp2 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14 Identity = 61/234 (26.07%), Postives = 101/234 (43.16%), Query Frame = 3 Query: 18 YDSNPF-DEEEVNPFSDPAVR--XXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAA--ARAGIVLEEKNWPPF------FPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVK--IWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIG 680 +D+NPF D +VNPF DP+V TN+A+ PAT +P P +PA + P R+ ++ RKE A + + + NWPP P + D + EIP QR+ + + ++ + L N++A AW + + L+I++F+ P A++ WYRP+Y+AF ++++ F FF + IG Sbjct: 4 FDTNPFADPVDVNPFQDPSVTQLTNAPQSGLAEFNPFSETNAATTVPATQ---APGPSQPAVLQPSVEPAQPTPQAVAAAAQAGLLRQQEELD---RKAAELERKERELQNTAANLHVRDNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLA-CLAWFTSDAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIG 230
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM2_HUMAN (Secretory carrier-associated membrane protein 2 OS=Homo sapiens GN=SCAMP2 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13 Identity = 62/237 (26.16%), Postives = 100/237 (42.19%), Query Frame = 3 Query: 18 YDSNPF-DEEEVNPFSDPAVRXXXXXXXXXXXXXXX--TTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAAR--AGIVLEEKNWPPF------FPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVK--IWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYLLHIGFCI 689 +D+NPF D +VNPF DP+V TN+A+ P T P +PA + P R+ ++ RKE A + + + NWPP P + D + EIP QR+ + + ++ + L N++A AW G K + L+I++F+ P A++ WYRP+Y+AF ++++ F FF + IG I Sbjct: 4 FDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQL---PGSSQPAVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELD---RKAAELERKERELQNTVANLHVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACL-AWFSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM1_MOUSE (Secretory carrier-associated membrane protein 1 OS=Mus musculus GN=Scamp1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12 Identity = 59/233 (25.32%), Postives = 98/233 (42.06%), Query Frame = 3 Query: 18 YDSNPFDEEEVN-PFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKE-EAAARAGIVLEEKNWPPF---FPI---IHHDIANEIPIHLQRL--------QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYL 668 +DSNPF + ++N PF DP+V ++S + PP + + +PA + P + E D R +E + ++ G + NWPP FP+ + D + +IP+ Q+ + A +L +F CL W V + A G L+I++F+ P ++V WYRPLY AF ++S+ +F FF Y+ Sbjct: 4 FDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGSVKMPNVPNTQPAIMKPTEEHPAYTQITKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHG---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSSRAVDFG-------LSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYI 226
BLAST of CF835856 vs. ExPASy Swiss-Prot
Match: SCAM1_PIG (Secretory carrier-associated membrane protein 1 OS=Sus scrofa GN=SCAMP1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12 Identity = 60/234 (25.64%), Postives = 100/234 (42.74%), Query Frame = 3 Query: 18 YDSNPFDEEEVN-PFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPH-EPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKE-EAAARAGIVLEEKNWPPF---FPI---IHHDIANEIPIHLQRL--------QYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFXTESAMKFGWFFLFYL 668 +DSNPF + ++N PF DP+V ++S + PP N ++ +P +PA + P + E D R +E + ++ G + NWPP FP+ + D + +IP+ Q+ + A +L +F CL W V + G L+I++F+ P ++V WYRPLY AF ++S+ +F FF Y+ Sbjct: 4 FDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPG-NVKMPNVPSTQPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHG---RKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCLAWFCVDPSRGVDFG-------LSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYI 226 The following BLAST results are available for this feature:
BLAST of CF835856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835856 ID=CF835856; Name=CF835856; organism=Citrus sinensis; type=EST; length=692bpback to top |