CF835861

Overview
NameCF835861
Unique NameCF835861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.854e-19
Identity = 62/199 (31.16%), Postives = 101/199 (50.75%), Query Frame = 2
Query:  113 SESREQRWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTT-IPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTS 706
            S    +R  L    ALVT  T GIG AI   L   GA V   SR +  +++ +   + +GL V+G+ C +    +R++L+ T   +  G ++ILV+NA          + T E +   +  N ++   +++   P ++  G G+++ +SS+      P  S Y  +K A+  LTK LA E    NIRVN +AP +I+TS
Sbjct:    3 SSGMTRRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAV-KLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTS 200          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.951e-19
Identity = 62/191 (32.46%), Postives = 98/191 (51.31%), Query Frame = 2
Query:  137 SLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            +L   T L+TGG  GIG+A V+      A V     +E +    I++  +  L    +  D+      Q  + +   +F G L++L+NNAG  I     E  + +++ ++  N    + +S+ A   +  SG GNII   SV GV+A P    Y ++KG + QLT+++A ++ K NIRVN V P II T L
Sbjct:    2 NLTDKTVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVHT--DITDEPACQNAIRSAVDKFGG-LDVLINNAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPL 189          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: KDUD_BACSU (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Bacillus subtilis GN=kduD PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.169e-18
Identity = 66/196 (33.67%), Postives = 105/196 (53.57%), Query Frame = 2
Query:  134 WSLKGMTALVTGGTRGIGHAIVEELTAFGAIV----HTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGK-LNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTS 706
            +SLKG TALVTG   GIG  I + L   GA +    HT S +ET+     Q  + +G   +    D+   ++ + + ++    F+ + ++ILVNNAG    ++A +F  E++  ++  N  S + L+QLA   +   G+G II I+S+       L   Y ++K A+  LTK+ A EW    I+VNA+AP  I T+
Sbjct:    8 FSLKGKTALVTGPGTGIGQGIAKALAGAGADIIGTSHTSSLSETQ-----QLVEQEGRIFTSFTLDM---SKPEAIKDSAAELFENRQIDILVNNAGIIHREKAEDFPEENWQHVLNVNLNSLFILTQLAGRHMLKRGHGKIINIASLLSFQGGILVPAYTASKHAVAGLTKSFANEWAASGIQVNAIAPGYISTA 195          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_HAEIN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Haemophilus influenzae GN=fabG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 69/192 (35.94%), Postives = 97/192 (50.52%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLID 715
            ++G  ALVTG TRGIG AI EEL++ GA V   + +E    E I  +   G K  G   ++  +   + L+E + ++F G ++ILVNNAG T          E++  IM TN  S YHLS+     +     G II I SV G    P  + Y + K  +   +K+LA E     I VN VAP  I T + +
Sbjct:    1 MQGKIALVTGSTRGIGRAIAEELSSKGAFVIGTATSEKGA-EAISAYL--GDKGKGLVLNVTDKESIETLLEQIKNDF-GDIDILVNNAGITRDNLLMRMKDEEWFDIMQTNLTSVYHLSKAMLRSMMKKRFGRIINIGSVVGSTGNPGQTNYCAAKAGVVGFSKSLAKEVAARGITVNVVAPGFIATDMTE 188          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: BDHA_RALEH (D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hbdH1 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLI 712
            L G TALVTG T GIG  I + L A GA +      + +  +       +G++V     D+   AE + +M    S+F G  +ILVNNAG        +F  E +  I+  N  SA+H ++LA P +K    G II ++S  G++A    S Y + K  +   TK  A E  +  +  NA+ P  + T L+
Sbjct:    2 LNGKTALVTGSTSGIGLGIAKALAAQGANIIVNGFGDADAAKAEIAQAGQGIRVGYHGADMSKAAEIEDMMRYAQSDFGGA-DILVNNAGIQHVAAIEDFPPERWDAIIAINLTSAFHTTRLALPGMKQKDWGRIINVASTHGLVASAQKSAYVAAKHGIVGFTKVTALETAQTGVTANAICPGWVLTPLV 191          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: UCPA_SALTY (Oxidoreductase ucpA OS=Salmonella typhimurium GN=ucpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 61/197 (30.96%), Postives = 105/197 (53.30%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTG-VIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK 727
            L G TAL+TG ++GIG  I       GA +     ++ E+ +   E   +G + +    D++  A  Q  +     E +G+++ILVNNAG        + + ED    +  N +  +++++   P +    +G I+ +SSVTG ++A P  + YA +K A+  LTK+LA E+ +  IRVNA+ P  +RT + +SI +
Sbjct:    4 LTGKTALITGASQGIGEGIARVFARHGANLILLDISD-EIEKLADELGGRGHRCTAVKADVRDFASVQAAVARA-KETEGRIDILVNNAGVCRLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIAR 198          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: UCPA_SALTI (Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 61/197 (30.96%), Postives = 105/197 (53.30%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTG-VIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK 727
            L G TAL+TG ++GIG  I       GA +     ++ E+ +   E   +G + +    D++  A  Q  +     E +G+++ILVNNAG        + + ED    +  N +  +++++   P +    +G I+ +SSVTG ++A P  + YA +K A+  LTK+LA E+ +  IRVNA+ P  +RT + +SI +
Sbjct:    4 LTGKTALITGASQGIGEGIARVFARHGANLILLDISD-EIEKLADELGGRGHRCTAVKADVRDFASVQAAVARA-KETEGRIDILVNNAGVCRLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIAR 198          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: GS39_BACSU (General stress protein 39 OS=Bacillus subtilis GN=ydaD PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 71/193 (36.79%), Postives = 97/193 (50.26%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETE-LNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEAT-EFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLI 712
            LKG  AL+TGG  GIG A+       GA +    ++E E   E  +  + +G+K    A D+       + +E    E  G L+ILVNNAG   PKE+  + T E       TNF S ++L++ A   LK      II  +S+   +  P    Y +TKGA+N  T+ +A    KD IRVNAVAP  I T LI
Sbjct:   40 LKGKVALITGGDSGIGRAVSVAYAKEGADIAIVYKDEHEDAEETKKRVEQEGVKCLLIAGDVGEEEFCNEAVEKTVKELGG-LDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLTKKAIDYLKPGSA--IINTTSINPYVGNPTLIDYTATKGAINAFTRTMAQALVKDGIRVNAVAPGPIWTPLI 229          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: DCXR_MESAU (L-xylulose reductase OS=Mesocricetus auratus GN=DCXR PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.442e-18
Identity = 65/191 (34.03%), Postives = 95/191 (49.74%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQL-AYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            L G  ALVTG  +GIG + V  L A GA V   SR + +L+  + E       V     DL      ++ + +V     G +++LVNNA   + +   E T E F      N  +   +SQ+ A  ++     G I+ +SS     A+   S+Y STKGA++ LTK +A E G   IRVNAV P ++ TS+
Sbjct:    5 LAGRRALVTGAGKGIGRSTVLALQAAGAHVVAVSRTQADLDSLVSECPG----VETVCVDLADWEATEQALSSV-----GPVDLLVNNAAVALLQPFLEVTKEAFDMSFNVNLRAVIQVSQIVARGMIARGAPGAIVNVSSQASQRALANHSVYCSTKGALDMLTKMMALELGPHKIRVNAVNPTVVMTSM 186          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: UCPA_ECOLI (Oxidoreductase ucpA OS=Escherichia coli (strain K12) GN=ucpA PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 61/197 (30.96%), Postives = 104/197 (52.79%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTG-VIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK 727
            L G TAL+TG  +GIG  I       GA +     +  E+ +   E   +G + +    D++  A     ++    E +G+++ILVNNAG        + + +D    +  N +  +++++   P + A  +G I+ +SSVTG ++A P  + YA TK A+  LTK+LA E+ +  IRVNA+ P  +RT + +SI +
Sbjct:    4 LTGKTALITGALQGIGEGIARTFARHGANLILLDISP-EIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRA-KEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIAR 198          
The following BLAST results are available for this feature:
BLAST of CF835861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
DHRS4_HUMAN6.854e-1931.16Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
BACC2_BACSU8.951e-1932.46Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
KDUD_BACSU1.169e-1833.672-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=B... [more]
FABG_HAEIN1.527e-1835.943-oxoacyl-[acyl-carrier-protein] reductase OS=Haem... [more]
BDHA_RALEH1.527e-1832.46D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia ... [more]
UCPA_SALTY2.604e-1830.96Oxidoreductase ucpA OS=Salmonella typhimurium GN=u... [more]
UCPA_SALTI2.604e-1830.96Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE... [more]
GS39_BACSU2.604e-1836.79General stress protein 39 OS=Bacillus subtilis GN=... [more]
DCXR_MESAU4.442e-1834.03L-xylulose reductase OS=Mesocricetus auratus GN=DC... [more]
UCPA_ECOLI5.802e-1830.96Oxidoreductase ucpA OS=Escherichia coli (strain K1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835861 ID=CF835861; Name=CF835861; organism=Citrus sinensis; type=EST; length=728bp
CAACACCCACTCCATTTGCAAAAATATTAAGATTCTCCTATTAAATACAA
CAAATTGCTATTGTTCTCATAAGAGAAGAATAATTTCAGTTTCTGATACC
CGGAAAAACATGTCAGAATCCAGAGAACAAAGGTGGTCTCTAAAGGGTAT
GACCGCGCTTGTAACAGGTGGAACCAGAGGCATCGGACACGCAATAGTGG
AAGAACTAACGGCATTTGGAGCAATAGTGCATACATGTTCACGTAATGAA
ACAGAGCTCAATGAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTAAAGT
AAGCGGCTCGGCATGTGACCTGAAAATTAGAGCTGAGCGTCAAAAGTTGA
TGGAGACTGTATGTTCTGAATTTGATGGCAAGCTCAACATCCTTGTAAAC
AATGCTGGAACCACCATTCCTAAGGAAGCCACAGAATTTACCATGGAGGA
TTTCTCGACTATAATGACCACCAATTTCGAGTCTGCTTACCACCTGTCCC
AACTTGCATACCCCCTACTCAAAGCATCAGGAAATGGAAACATCATTTTT
ATCTCCTCTGTCACGGGTGTTATAGCTGTACCTCTATGTTCCATCTATGC
ATCAACTAAAGGAGCAATGAATCAACTGACAAAGAACTTGGCATGTGAGT
GGGGAAAGGACAACATTCGCGTGAATGCAGTTGCTCCATGGATCATTAGA
ACCTCTCTCATTGATTCCATAGAAAAGG
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