CF835861

Overview
NameCF835861
Unique NameCF835861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: Y1430_HAEIN (Probable NADP-dependent dehydrogenase HI1430 OS=Haemophilus influenzae GN=HI1430 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 53/184 (28.80%), Postives = 87/184 (47.28%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKE-ATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAP 688
            +K  TALVTG T G G AI ++L   G  V    R    L E   +  +  L +   A D++        + T+   +   +++LVNNAG  +  E A +  ++D+  ++ TN +    +++L  P + A   G II +SS+ G       ++Y  TK  + Q + NL  +     IRV+ V P
Sbjct:    1 MKTTTALVTGATAGFGLAICKKLIEAGYKVIGTGRRADRLAEIHSQLGNNFLPL---AFDIRDEQATINALNTLPEGWQA-VDLLVNNAGLALGLEPAHKADLQDWYQMIDTNIKGLVTITRLVLPNMVARNYGQIINLSSIAGTYPYAGSNVYGGTKAFVTQFSLNLRADLAGTKIRVSNVEP 180          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: PHAB_PARDE (Acetoacetyl-CoA reductase OS=Paracoccus denitrificans GN=phaB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 55/195 (28.21%), Postives = 91/195 (46.67%), Query Frame = 2
Query:  155 ALVTGGTRGIGHAIVEELTAFG-AIVHTCSRNETELNERIQEWKSKGLKVSGS---ACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK 727
            ALVTGG+RGIG AI + L   G  +    + N+       +E   K  K S +   AC   I+   ++L         G + +LVNNAG T      + T + +  ++ TN    ++++   +  ++    G I+ ISS+ G       + Y++ K      TK LA E  +  I VNA+ P  I T ++ +I++
Sbjct:    5 ALVTGGSRGIGAAISKALKEAGYTVAANYAGNDDAARAFTEETGIKTYKWSVADYDACAAGIKQVEEEL---------GPIAVLVNNAGITRDAMFHKMTPQQWKEVIDTNLTGLFNMTHPVWSGMRDRKYGRIVNISSINGQKGQAGQANYSAAKAGDLGFTKALAQEGARAGITVNAICPGYIGTEMVRAIDE 190          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: KDSR_DICDI (3-ketodihydrosphingosine reductase OS=Dictyostelium discoideum GN=ksrA-1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 54/206 (26.21%), Postives = 95/206 (46.12%), Query Frame = 2
Query:  122 REQRWSLKGMTALVTGGTRGIGHAIVEELTAFG-AIVHTCSRNETELNERIQEWKSKGL-------------KVSGSACDLKIRAE-RQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG--NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAP 688
            ++  + LKG   +V GG+ GIG  +V EL     A +   SR+  +L   + +  S+               K+   +CD+  + + ++ + + V     GK++ L+N AG  IP    E   E F   M  ++  + + ++   PL+  +G   G+I+F+SS  G++ VP  S Y  +K A+  L + L  E     I  + V P
Sbjct:   21 KQTGFKLKGKHIVVVGGSSGIGKELVYELLKENIASISVISRSLDKLRSVVDDCPSEVCTKSTPLNVGSLKSKIEIYSCDITNKIKVKETIAQIVSKNQGGKIDCLINCAGFAIPGYFIEQDEEIFEKTMQLDYFGSLYATKEVVPLMIENGGQGGHIVFVSSTCGLVGVPGYSTYCPSKFALRGLAETLRSELKPYKITFSVVYP 226          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: DHR11_HUMAN (Dehydrogenase/reductase SDR family member 11 OS=Homo sapiens GN=DHRS11 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 56/206 (27.18%), Postives = 96/206 (46.60%), Query Frame = 2
Query:  110 MSESREQRWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGL--KVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG--NGNIIFISSVTG--VIAVPLCSIYASTKGAMNQLTKNLACEW--GKDNIRVNAVAPWIIRT 703
            M+    +RW  +   ALVTG + GIG A+   L   G  V  C+R    + E   E KS G    +    CDL    +   +   + S+  G ++I +NNAG   P      +   +  +   N  +    ++ AY  +K     +G+II I+S++G  V+ + +   Y++TK A+  LT+ L  E    + +IR   ++P ++ T
Sbjct:    1 MARPGMERW--RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG-VDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVET 203          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: DHB13_HUMAN (17-beta hydroxysteroid dehydrogenase 13 OS=Homo sapiens GN=HSD17B13 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 49/196 (25.00%), Postives = 83/196 (42.35%), Query Frame = 2
Query:  125 EQRWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACE---WGKDNIRVNAVAPWIIRT 703
            ++R S+ G   L+TG   GIG     E     +I+     N+  + E   E +  G+       D   R E  + +  V  E  G + I+VNNAGT  P +      E+ +     N    + +++   P +    +G+I+ ++SV G   +P    Y S+K A     + L  E    GK  I+ + + P  + T
Sbjct:   29 QRRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSILVLWDINKRGVEETAAECRKLGVTAHAYVVDCSNREEIYRSLNQVKKEV-GDVTIVVNNAGTVYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPYCSSKFAAVGFHRGLTSELQALGKTGIKTSCLCPVFVNT 223          
The following BLAST results are available for this feature:
BLAST of CF835861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
Y1430_HAEIN8.972e-1128.80Probable NADP-dependent dehydrogenase HI1430 OS=Ha... [more]
PHAB_PARDE8.972e-1128.21Acetoacetyl-CoA reductase OS=Paracoccus denitrific... [more]
KDSR_DICDI8.972e-1126.213-ketodihydrosphingosine reductase OS=Dictyosteliu... [more]
DHR11_HUMAN8.972e-1127.18Dehydrogenase/reductase SDR family member 11 OS=Ho... [more]
DHB13_HUMAN8.972e-1125.0017-beta hydroxysteroid dehydrogenase 13 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835861 ID=CF835861; Name=CF835861; organism=Citrus sinensis; type=EST; length=728bp
CAACACCCACTCCATTTGCAAAAATATTAAGATTCTCCTATTAAATACAA
CAAATTGCTATTGTTCTCATAAGAGAAGAATAATTTCAGTTTCTGATACC
CGGAAAAACATGTCAGAATCCAGAGAACAAAGGTGGTCTCTAAAGGGTAT
GACCGCGCTTGTAACAGGTGGAACCAGAGGCATCGGACACGCAATAGTGG
AAGAACTAACGGCATTTGGAGCAATAGTGCATACATGTTCACGTAATGAA
ACAGAGCTCAATGAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTAAAGT
AAGCGGCTCGGCATGTGACCTGAAAATTAGAGCTGAGCGTCAAAAGTTGA
TGGAGACTGTATGTTCTGAATTTGATGGCAAGCTCAACATCCTTGTAAAC
AATGCTGGAACCACCATTCCTAAGGAAGCCACAGAATTTACCATGGAGGA
TTTCTCGACTATAATGACCACCAATTTCGAGTCTGCTTACCACCTGTCCC
AACTTGCATACCCCCTACTCAAAGCATCAGGAAATGGAAACATCATTTTT
ATCTCCTCTGTCACGGGTGTTATAGCTGTACCTCTATGTTCCATCTATGC
ATCAACTAAAGGAGCAATGAATCAACTGACAAAGAACTTGGCATGTGAGT
GGGGAAAGGACAACATTCGCGTGAATGCAGTTGCTCCATGGATCATTAGA
ACCTCTCTCATTGATTCCATAGAAAAGG
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