CF835861

Overview
NameCF835861
Unique NameCF835861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: UCPA_ECO57 (Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN=ucpA PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 61/197 (30.96%), Postives = 104/197 (52.79%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTG-VIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK 727
            L G TAL+TG  +GIG  I       GA +     +  E+ +   E   +G + +    D++  A     ++    E +G+++ILVNNAG        + + +D    +  N +  +++++   P + A  +G I+ +SSVTG ++A P  + YA TK A+  LTK+LA E+ +  IRVNA+ P  +RT + +SI +
Sbjct:    4 LTGKTALITGALQGIGEGIARTFARHGANLILLDISP-EIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRA-KEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIAR 198          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: KDUD_ECOLI (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=kduD PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 65/195 (33.33%), Postives = 100/195 (51.28%), Query Frame = 2
Query:  134 WSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNG----NIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTS 706
            +SL+G  A+VTG   G+G  +   L   G  +     N  E  E I++  + G +      DL+       L++   +EF G ++ILVNNAG    ++A EF+ +D+  +M  N +S + +SQ A     A GNG    NI  + S  G I VP    Y ++K  +  +T+ +A EW K NI VNA+AP  + T+
Sbjct:    6 FSLEGKVAVVTGCDTGLGQGMALGLAQAGCDI--VGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLDRAVAEF-GHIDILVNNAGLIRREDALEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVP---SYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATN 194          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 59/194 (30.41%), Postives = 101/194 (52.06%), Query Frame = 2
Query:  128 QRWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTT-IPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTS 706
            +R  L    A+VT  T GIG AI   L   GA V   SR +  ++  +   +++GL V+G+ C +    +R++L+ T  +   G ++ILV+NA       +  + T E +  I+  N ++   +++   P ++  G G+++ ++S+           Y  +K A+  LTKNLA E    NIRVN +AP +I+TS
Sbjct:    8 RRDPLANKVAIVTASTDGIGLAIARRLAQDGAHVVISSRKQQNVDRAVAALQAEGLSVTGTVCHVGKAEDRERLVATALN-LHGGIDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTS 200          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: Y4MP_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4mP OS=Rhizobium sp. (strain NGR234) GN=NGR_a02430 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 67/199 (33.67%), Postives = 99/199 (49.75%), Query Frame = 2
Query:  140 LKGMTALVTGGT--RGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWK--SKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVT-----GVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            LKG TA+++G    RGIG A  E   + GA V     N  E      +      G  + G  CD+  RA      + V S F G  NIL+NNAG T P +  + +  D+  I+  N     +LSQ+  P ++ +G G+I  +SSV+     G+   P    Y++ K  +  L K +A E+G D+IRVN V P +I+T +
Sbjct:    3 LKGKTAVISGAASKRGIGRATAELFASHGARVAILDINADEAKAAAGDLPPVEHGAHI-GLRCDVADRASCTSASDEVLSAF-GVANILINNAGITQPVKTLDISDADWQRIVAVNMTGVLNLSQVFIPNMRQNGGGSIACMSSVSAQRGGGIFGGP---HYSAAKAGVLGLAKAMAREFGPDSIRVNCVTPGLIQTDI 196          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_STAAW (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 62/193 (32.12%), Postives = 103/193 (53.37%), Query Frame = 2
Query:  152 TALVTGGTRGIGHAIVEELTAFG---AIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            +ALVTG +RGIG +I  +L   G   A+ +  S+ + E    ++E K+KG+       ++    E + +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++
Sbjct:    6 SALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAV--VEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_STAAS (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 62/193 (32.12%), Postives = 103/193 (53.37%), Query Frame = 2
Query:  152 TALVTGGTRGIGHAIVEELTAFG---AIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            +ALVTG +RGIG +I  +L   G   A+ +  S+ + E    ++E K+KG+       ++    E + +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++
Sbjct:    6 SALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAV--VEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_STAAR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 62/193 (32.12%), Postives = 103/193 (53.37%), Query Frame = 2
Query:  152 TALVTGGTRGIGHAIVEELTAFG---AIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            +ALVTG +RGIG +I  +L   G   A+ +  S+ + E    ++E K+KG+       ++    E + +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++
Sbjct:    6 SALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAV--VEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_STAAN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 62/193 (32.12%), Postives = 103/193 (53.37%), Query Frame = 2
Query:  152 TALVTGGTRGIGHAIVEELTAFG---AIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            +ALVTG +RGIG +I  +L   G   A+ +  S+ + E    ++E K+KG+       ++    E + +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++
Sbjct:    6 SALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAV--VEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_STAAM (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fabG PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 62/193 (32.12%), Postives = 103/193 (53.37%), Query Frame = 2
Query:  152 TALVTGGTRGIGHAIVEELTAFG---AIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            +ALVTG +RGIG +I  +L   G   A+ +  S+ + E    ++E K+KG+       ++    E + +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++
Sbjct:    6 SALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAV--VEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_STAAC (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain COL) GN=fabG PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 62/193 (32.12%), Postives = 103/193 (53.37%), Query Frame = 2
Query:  152 TALVTGGTRGIGHAIVEELTAFG---AIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            +ALVTG +RGIG +I  +L   G   A+ +  S+ + E    ++E K+KG+       ++    E + +++ V S+F G L++LVNNAG T          +++  ++ TN +  ++  Q A P +    +G II +SSV G +  P  + Y +TK  +  LTK+ A E     I VNAVAP  I + + D++
Sbjct:    6 SALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAV--VEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF-GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL 195          
The following BLAST results are available for this feature:
BLAST of CF835861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
UCPA_ECO575.802e-1830.96Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN... [more]
KDUD_ECOLI5.802e-1833.332-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=E... [more]
DHRS4_RABIT5.802e-1830.41Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
Y4MP_RHISN9.896e-1833.67Uncharacterized short-chain type dehydrogenase/red... [more]
FABG_STAAW9.896e-1832.123-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAS9.896e-1832.123-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAR9.896e-1832.123-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAN9.896e-1832.123-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAM9.896e-1832.123-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAAC9.896e-1832.123-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835861 ID=CF835861; Name=CF835861; organism=Citrus sinensis; type=EST; length=728bp
CAACACCCACTCCATTTGCAAAAATATTAAGATTCTCCTATTAAATACAA
CAAATTGCTATTGTTCTCATAAGAGAAGAATAATTTCAGTTTCTGATACC
CGGAAAAACATGTCAGAATCCAGAGAACAAAGGTGGTCTCTAAAGGGTAT
GACCGCGCTTGTAACAGGTGGAACCAGAGGCATCGGACACGCAATAGTGG
AAGAACTAACGGCATTTGGAGCAATAGTGCATACATGTTCACGTAATGAA
ACAGAGCTCAATGAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTAAAGT
AAGCGGCTCGGCATGTGACCTGAAAATTAGAGCTGAGCGTCAAAAGTTGA
TGGAGACTGTATGTTCTGAATTTGATGGCAAGCTCAACATCCTTGTAAAC
AATGCTGGAACCACCATTCCTAAGGAAGCCACAGAATTTACCATGGAGGA
TTTCTCGACTATAATGACCACCAATTTCGAGTCTGCTTACCACCTGTCCC
AACTTGCATACCCCCTACTCAAAGCATCAGGAAATGGAAACATCATTTTT
ATCTCCTCTGTCACGGGTGTTATAGCTGTACCTCTATGTTCCATCTATGC
ATCAACTAAAGGAGCAATGAATCAACTGACAAAGAACTTGGCATGTGAGT
GGGGAAAGGACAACATTCGCGTGAATGCAGTTGCTCCATGGATCATTAGA
ACCTCTCTCATTGATTCCATAGAAAAGG
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