CF835861

Overview
NameCF835861
Unique NameCF835861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_PSEAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=fabG PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = 2
Query:  137 SLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            SL+G  ALVTG +RGIG AI  EL   GA+V   + + +   +  +  K+ G++ +G   D+         +E +     G+  I+VNNAG T          +++  ++ TN  S Y LS+     +  +  G II I SV G +     + YA+ K  +   T+ LA E G   I VNAVAP  I T +
Sbjct:    2 SLQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHL-GQPLIVVNNAGITRDNLLVRMKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDM 191          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: DCXR_RAT (L-xylulose reductase OS=Rattus norvegicus GN=Dcxr PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 65/191 (34.03%), Postives = 93/191 (48.69%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            L G  ALVTG  +GIG + V  L A GA V   SR   +L+  ++E       V     DL      ++ +  V     G +++LVNNA     +   E T E   T    NF +   +SQ+    + A G  G I+ +SS     A+   ++Y STKGA++ LTK +A E G   IRVNAV P ++ T +
Sbjct:    5 LAGRRALVTGAGKGIGRSTVLALQAAGAQVVAVSRTREDLDSLVRECPG----VEPVCVDLADWEATEQALSNV-----GPVDLLVNNAAVATLQPFLEVTKEACDTSFNVNFRAVVQVSQIVARGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTPM 186          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: Y2403_STAAW (Uncharacterized oxidoreductase MW2403 OS=Staphylococcus aureus (strain MW2) GN=MW2403 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 50/185 (27.03%), Postives = 101/185 (54.59%), Query Frame = 2
Query:  155 ALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            A+VTG   GIG AI   L   GA V    RN+ +L     +     +KV  +  D+  + E  +L++     F G L+I++N+AG  +  + T++ ++++ +++  N +   +  Q A P +    +G++I I+S++G       +IY++TK A++ +T+ L  E  K  ++V +++P ++ T++
Sbjct:    9 AVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVPT--DVTNKEEVDELIKIAQQTFGG-LDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTVQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAI 190          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: Y2370_STAAS (Uncharacterized oxidoreductase SAS2370 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2370 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 50/185 (27.03%), Postives = 101/185 (54.59%), Query Frame = 2
Query:  155 ALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            A+VTG   GIG AI   L   GA V    RN+ +L     +     +KV  +  D+  + E  +L++     F G L+I++N+AG  +  + T++ ++++ +++  N +   +  Q A P +    +G++I I+S++G       +IY++TK A++ +T+ L  E  K  ++V +++P ++ T++
Sbjct:    9 AVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVPT--DVTNKEEVDELIKIAQQTFGG-LDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTVQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAI 190          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: Y2567_STAAR (Uncharacterized oxidoreductase SAR2567 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2567 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 49/185 (26.49%), Postives = 102/185 (55.14%), Query Frame = 2
Query:  155 ALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            A+VTG   GIG AI   L   GA V    RN+ +L     +     +KV  +  D+  + E  +L++     F G L+I++N+AG  +  + T++ ++++ +++  N +   + ++ A P +    +G++I I+S++G       +IY++TK A++ +T+ L  E  K  ++V +++P ++ T++
Sbjct:    9 AVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKVVPT--DVTKKEEVDELIKMAQQTFGG-LDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAKAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAI 190          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: Y4VI_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4vI OS=Rhizobium sp. (strain NGR234) GN=NGR_a01150 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 64/200 (32.00%), Postives = 100/200 (50.00%), Query Frame = 2
Query:  146 GMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNET---ELNERIQEWKSKGLKVSGSACD--LKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFT-MEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSIEK 727
            G   +VTG   GIG A+V+   A G +V      ++   EL + + E    GL+V  S  D  + +RA  +K           ++ +LVNNAG      AT  T +EDF   +  N   AY ++     L+K      I+ ++S+ G++  P  S YA++K  +  +TK+LAC W    IRV AVAP  +RT ++  +E+
Sbjct:    9 GRVIVVTGAAGGIGRALVDIFAANGDVVVAVDLPDSGVIELGQNLGE-PHLGLEVDVSREDDVVALRALLEKRFS--------RIEVLVNNAGIGPTMAATADTALEDFQRALAINLVGAYSVACETAKLMKPGAA--IVNVASLAGLLGNPKRSAYAASKAGLISITKSLACRWASRGIRVTAVAPGHVRTPMVAELER 197          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: NODG_RHIS3 (Nodulation protein G OS=Rhizobium sp. (strain N33) GN=nodG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 66/197 (33.50%), Postives = 101/197 (51.27%), Query Frame = 2
Query:  134 WSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLS-QLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            + L G  ALVTG + GIG AI   L A GAIV        +L     E    G +V     +L  R E + L +   ++ +G ++ILVNNAG T        +  D+ T++  N  + + L+ +L +P+++   +G II I+SV GV   P  + Y ++K  M   +K+LA E    NI VN VAP  I +++ D +
Sbjct:    2 FELTGRKALVTGASGGIGEAIARVLHAQGAIVGLHGTRVEKLETLAAEL---GDRVKLFPANLSNRDEVKALGQKAEADLEG-VDILVNNAGITKDGLFVRMSDADWDTVLEVNLTAVFRLTRELTHPMMRRR-HGRIINITSVVGVTGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKL 193          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_VIBCH (3-oxoacyl-[acyl-carrier-protein] reductase OS=Vibrio cholerae GN=fabG PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 63/195 (32.31%), Postives = 97/195 (49.74%), Query Frame = 2
Query:  137 SLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            +L+G  ALVTG +RGIG AI E L   GA V   + +E+   + I ++     K  G A ++      + +++ +  EF G ++ILVNNAG T          E++S IM TN  S + LS+     +     G II + SV G +     + YA+ K  +   TK++A E     + VN VAP  I T +  ++
Sbjct:    2 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGA-QAISDYLGDNGK--GMALNVTNPESIEAVLKAITDEFGG-VDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKAL 192          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_STAES (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fabG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 57/193 (29.53%), Postives = 104/193 (53.89%), Query Frame = 2
Query:  152 TALVTGGTRGIGHAIVEELTAFG---AIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            +ALVTG +RGIG +I  +L   G   A+ +  S+++ E    ++E K+KG++      ++    E +++++ V S+F G +++LVNNAG T          +++  ++ TN +  ++  Q   P +    +G II ++S+ G +  P  + Y +TK  +  LTK  A E     I VNAVAP  I + + +++
Sbjct:    4 SALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAV--VEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQF-GSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNAL 193          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_STAEQ (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fabG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 57/193 (29.53%), Postives = 104/193 (53.89%), Query Frame = 2
Query:  152 TALVTGGTRGIGHAIVEELTAFG---AIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            +ALVTG +RGIG +I  +L   G   A+ +  S+++ E    ++E K+KG++      ++    E +++++ V S+F G +++LVNNAG T          +++  ++ TN +  ++  Q   P +    +G II ++S+ G +  P  + Y +TK  +  LTK  A E     I VNAVAP  I + + +++
Sbjct:    4 SALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAV--VEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQF-GSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNAL 193          
The following BLAST results are available for this feature:
BLAST of CF835861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
FABG_PSEAE1.429e-1632.463-oxoacyl-[acyl-carrier-protein] reductase OS=Pseu... [more]
DCXR_RAT1.429e-1634.03L-xylulose reductase OS=Rattus norvegicus GN=Dcxr ... [more]
Y2403_STAAW1.866e-1627.03Uncharacterized oxidoreductase MW2403 OS=Staphyloc... [more]
Y2370_STAAS1.866e-1627.03Uncharacterized oxidoreductase SAS2370 OS=Staphylo... [more]
Y2567_STAAR3.184e-1626.49Uncharacterized oxidoreductase SAR2567 OS=Staphylo... [more]
Y4VI_RHISN4.158e-1632.00Uncharacterized short-chain type dehydrogenase/red... [more]
NODG_RHIS34.158e-1633.50Nodulation protein G OS=Rhizobium sp. (strain N33)... [more]
FABG_VIBCH4.158e-1632.313-oxoacyl-[acyl-carrier-protein] reductase OS=Vibr... [more]
FABG_STAES5.430e-1629.533-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAEQ5.430e-1629.533-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835861 ID=CF835861; Name=CF835861; organism=Citrus sinensis; type=EST; length=728bp
CAACACCCACTCCATTTGCAAAAATATTAAGATTCTCCTATTAAATACAA
CAAATTGCTATTGTTCTCATAAGAGAAGAATAATTTCAGTTTCTGATACC
CGGAAAAACATGTCAGAATCCAGAGAACAAAGGTGGTCTCTAAAGGGTAT
GACCGCGCTTGTAACAGGTGGAACCAGAGGCATCGGACACGCAATAGTGG
AAGAACTAACGGCATTTGGAGCAATAGTGCATACATGTTCACGTAATGAA
ACAGAGCTCAATGAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTAAAGT
AAGCGGCTCGGCATGTGACCTGAAAATTAGAGCTGAGCGTCAAAAGTTGA
TGGAGACTGTATGTTCTGAATTTGATGGCAAGCTCAACATCCTTGTAAAC
AATGCTGGAACCACCATTCCTAAGGAAGCCACAGAATTTACCATGGAGGA
TTTCTCGACTATAATGACCACCAATTTCGAGTCTGCTTACCACCTGTCCC
AACTTGCATACCCCCTACTCAAAGCATCAGGAAATGGAAACATCATTTTT
ATCTCCTCTGTCACGGGTGTTATAGCTGTACCTCTATGTTCCATCTATGC
ATCAACTAAAGGAGCAATGAATCAACTGACAAAGAACTTGGCATGTGAGT
GGGGAAAGGACAACATTCGCGTGAATGCAGTTGCTCCATGGATCATTAGA
ACCTCTCTCATTGATTCCATAGAAAAGG
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