CF835861

Overview
NameCF835861
Unique NameCF835861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 58/192 (30.21%), Postives = 99/192 (51.56%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGA-IVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            LK    ++TGG+ G+G A+        A +V     NE E  +  +E +  G +      D+    +   L++T   EF G L++++NNAG   P  + E ++++++ ++ TN   A+  S+ A      +   GN+I +SSV  +I  PL   YA++KG M Q+T+ LA E+    IRVN + P  + T +
Sbjct:    5 LKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEF-GTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKQMTETLALEYAPKGIRVNNIGPGAMNTPI 195          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_CHLTR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia trachomatis GN=fabG PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 7.092e-16
Identity = 63/196 (32.14%), Postives = 102/196 (52.04%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSK-GLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHL-SQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            L   TA+VTGG+RGIG +I +     GA V     N        Q    + G +VS +  D+         ++   +E++  ++++VNNAG T        + E++S+++ TN  S Y++ S +  P++KA  +G II ISS+ G+   P  + YA+ K  +   +K L+ E G  NIRVN +AP  I T +  S+
Sbjct:    5 LVNKTAIVTGGSRGIGFSIAKLFAEQGANVQIWGINGEAGQAAAQTLSEQTGRQVSFALVDVSKNDMVSAQVQNFLAEYN-TIDVIVNNAGITRDALLMRMSEEEWSSVINTNLGSIYNVCSAVIRPMIKAR-SGAIINISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMTKSL 198          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: DCXR_CAVPO (L-xylulose reductase OS=Cavia porcellus GN=DCXR PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.092e-16
Identity = 64/191 (33.51%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASG-NGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            L G  ALVTG  +GIG + V  L A GA V   SR   +L++ ++E       V     DL      ++ +  V     G  ++LVNNA   + +   E T E   T    N  +   +SQ+    + A G  G I+ +SS     A+   ++Y STKGA+  LTK +A E G   IRVNAV P ++ T +
Sbjct:    5 LAGRRALVTGAGKGIGRSTVLALKAAGAQVVAVSRTREDLDDLVRECPG----VEPVCVDLADWEATEQALSNV-----GPADLLVNNAAVALLQPFLEVTKEACVTSFNVNLRAVIQVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALYMLTKMMALELGPHKIRVNAVNPTVVMTPM 186          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: PECR_RAT (Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus norvegicus GN=Pecr PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 53/191 (27.75%), Postives = 88/191 (46.07%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWK-----SKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWII 697
            L+   A+VTGG  GIG AI  EL   G  V   SR    L   + E +     S   +V+   C+++   E   L+++  +++ GK+N LVNNAG      A + T + +  ++ TN    +++ +  Y        G+I+ I  +      P  +   + +  +  LTK +A  W    +R+N VAP  I
Sbjct:   16 LQNQVAVVTGGATGIGKAISRELLHLGCNVVIASRKLDRLTAAVDELRASQPPSSSTQVTAIQCNIRKEEEVNNLVKSTLAKY-GKINFLVNNAGGQFMAPAEDITAKGWQAVIETNLTGTFYMCKAVYNSWMKDHGGSIVNIIVLLN-NGFPTAAHSGAARAGVYNLTKTMALTWASSGVRINCVAPGTI 204          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: BAIA1_EUBSP (Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (strain VPI 12708) GN=baiA1 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 59/186 (31.72%), Postives = 93/186 (50.00%), Query Frame = 2
Query:  158 LVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKS--KGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            ++TGGTRGIG A  +     GA V      + E++  + + K      +V G A DL  R      + TV  ++ G+L++++NNAG T+    +  + EDF  IM  N    ++ +  AY  +K +  G II  +SVTG+        Y ++K  +  LT  L  E  + NIRV  VAP ++ T +
Sbjct:   10 IITGGTRGIGFAAAKLFIENGAKVSIFGETQEEVDTALAQLKELYPEEEVLGFAPDLTSRDAVMAAVGTVAQKY-GRLDVMINNAGITMNSVFSRVSEEDFKNIMDINVNGVFNGAWSAYQCMKDAKQGVIINTASVTGIYGSLSGIGYPTSKAGVIGLTHGLGREIIRKNIRVVGVAPGVVDTDM 194          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: HSD_MYCTU (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium tuberculosis GN=fabG3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 59/196 (30.10%), Postives = 99/196 (50.51%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSA----CDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLID 715
            L G  ALV+GG RG+G + V  + A GA V      +       +E K+   +++ +A     D+   A+    ++T  + F G L++LVNNAG        ++ + ++  I+  N    +   +     +K +G G+II ISS+ G+     C  Y +TK A+  LTK+ A E G   IRVN++ P +++T + D
Sbjct:    5 LIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD-------EEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGG-LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD 192          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: HSD_MYCBO (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium bovis GN=fabG3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 59/196 (30.10%), Postives = 99/196 (50.51%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSA----CDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLID 715
            L G  ALV+GG RG+G + V  + A GA V      +       +E K+   +++ +A     D+   A+    ++T  + F G L++LVNNAG        ++ + ++  I+  N    +   +     +K +G G+II ISS+ G+     C  Y +TK A+  LTK+ A E G   IRVN++ P +++T + D
Sbjct:    5 LIGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD-------EEGKAVAAELADAARYVHLDVTQPAQWTAAVDTAVTAFGG-LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD 192          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: ARDH_CANTR (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Candida tropicalis GN=ARD PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 63/211 (29.86%), Postives = 105/211 (49.76%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNER---IQEWKSKGLK---------VSGSACDLKIRAERQKLMETVCSEFDGKL-NILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQ-LAYPLLKASGNGNIIFISSVTGVIA---VPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSLIDSI 721
            L G   ++TGG+ G+   +   L A GA +     N     +    + +W  + +K         VS  +C++   AE  +L     +E  GK+ ++L+N AG      A E+  ++   IM  N   ++++SQ  A PL++ +  G+II I S++G I     P C +Y  +K  +  L ++LACEW K NIRVN ++P  I T L  ++
Sbjct:   18 LDGKLVIITGGSGGLSAVVSRALLAKGADIALIDMNLERTQQAARDVLQWGEEQMKGKHESPIGQVSAWSCNIG-DAEAVELTFKAINEHHGKVASVLINTAGYAENFPAEEYPAKNAENIMKVNGLGSFYVSQAFARPLIQNNMTGSIILIGSMSGTIVNDPQPQC-MYNMSKAGVIHLARSLACEWAKYNIRVNTLSPGYILTPLTRNV 226          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: FABG_CHLPN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia pneumoniae GN=fabG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 58/191 (30.37%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  137 SLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTTIPKEATEFTMEDFSTIMTTNFESAYHLSQLAYPLLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRTSL 709
            +L G   +VTGG+RGIG  IV+     GA V     NE      I+     G +VS +  D+      +  ++    + + K++ILVNNAG T        + +D+ ++++TN  S Y+        +  + +G+II ++S+   I     + YA+ K  +   TK+LA E    NIRVN +AP  I T +
Sbjct:    4 TLVGKKVIVTGGSRGIGLGIVKLFLENGADVEIWGLNEERGQAVIESLTGLGGEVSFARVDVSHNGGVKDCVQKFLDKHN-KIDILVNNAGITRDNLLMRMSEDDWQSVISTNLTSLYYTCSSVIRHMIKARSGSIINVASIVAKIGSAGQTNYAAAKAGIIAFTKSLAKEVAARNIRVNCLAPGFIETDM 193          
BLAST of CF835861 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 60/194 (30.93%), Postives = 99/194 (51.03%), Query Frame = 2
Query:  140 LKGMTALVTGGTRGIGHAIVEELTAFGA----IVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMETVCSEFDGKLNILVNNAGTT-IPKEATEFTMEDFSTIMTTNFESAYHLSQLAYP-LLKASGNGNIIFISSVTGVIAVPLCSIYASTKGAMNQLTKNLACEWGKDNIRVNAVAPWIIRT 703
            L G TA+VTG ++GIG AI E    FG     +V     + +  +E ++  K  G K      D+      Q L++T    F G L+++VNN+G   +     E ++ED+  ++  N    +  ++ A   ++K +  GN++ ISSV   I  P+   Y+++KG +  +T+ LA  +    IRVNA+AP  I T
Sbjct:    5 LTGKTAIVTGSSKGIGKAIAER---FGKEKMNVVVNYHSDPSGADETLEIIKQNGGKAVSVEADVSKEEGIQALLDTALEHF-GTLDVMVNNSGFNGVEAMPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIAT 194          
The following BLAST results are available for this feature:
BLAST of CF835861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
DHG3_BACME5.430e-1630.21Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
FABG_CHLTR7.092e-1632.143-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
DCXR_CAVPO7.092e-1633.51L-xylulose reductase OS=Cavia porcellus GN=DCXR PE... [more]
PECR_RAT1.210e-1527.75Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus ... [more]
BAIA1_EUBSP1.210e-1531.72Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (... [more]
HSD_MYCTU2.064e-1530.103-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
HSD_MYCBO2.064e-1530.103-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
ARDH_CANTR2.064e-1529.86D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
FABG_CHLPN2.695e-1530.373-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
DHG2_BACSU2.695e-1530.93Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835861 ID=CF835861; Name=CF835861; organism=Citrus sinensis; type=EST; length=728bp
CAACACCCACTCCATTTGCAAAAATATTAAGATTCTCCTATTAAATACAA
CAAATTGCTATTGTTCTCATAAGAGAAGAATAATTTCAGTTTCTGATACC
CGGAAAAACATGTCAGAATCCAGAGAACAAAGGTGGTCTCTAAAGGGTAT
GACCGCGCTTGTAACAGGTGGAACCAGAGGCATCGGACACGCAATAGTGG
AAGAACTAACGGCATTTGGAGCAATAGTGCATACATGTTCACGTAATGAA
ACAGAGCTCAATGAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTAAAGT
AAGCGGCTCGGCATGTGACCTGAAAATTAGAGCTGAGCGTCAAAAGTTGA
TGGAGACTGTATGTTCTGAATTTGATGGCAAGCTCAACATCCTTGTAAAC
AATGCTGGAACCACCATTCCTAAGGAAGCCACAGAATTTACCATGGAGGA
TTTCTCGACTATAATGACCACCAATTTCGAGTCTGCTTACCACCTGTCCC
AACTTGCATACCCCCTACTCAAAGCATCAGGAAATGGAAACATCATTTTT
ATCTCCTCTGTCACGGGTGTTATAGCTGTACCTCTATGTTCCATCTATGC
ATCAACTAAAGGAGCAATGAATCAACTGACAAAGAACTTGGCATGTGAGT
GGGGAAAGGACAACATTCGCGTGAATGCAGTTGCTCCATGGATCATTAGA
ACCTCTCTCATTGATTCCATAGAAAAGG
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