CF835865

Overview
NameCF835865
Unique NameCF835865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835865 vs. ExPASy Swiss-Prot
Match: PER45_ARATH (Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.207e-30
Identity = 79/190 (41.58%), Postives = 108/190 (56.84%), Query Frame = 2
Query:   92 LVVFTGKSSAQLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTSGPNINSA-RGFEVVDDIKSKVEK--VCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSXAHTIGQARC 652
            L++ +   SAQL T FY  +CP +   V++AV+    +      + LRL FHDCFV GCD SI++   S    E+    +++ A  GF+ V   K  V+    C   VSCADILA+A R  V + GGPS+ V+LGRRD + ++ A+  S  +P P   L+ L   F   GLS  DM+ALS AHTIG A C
Sbjct:   16 LLLLSSCVSAQLRTGFYQNSCPNVETIVRNAVRQKFQQTFVTAPATLRLFFHDCFVRGCDASIMIASPS----ERDHPDDMSLAGDGFDTVVKAKQAVDSNPNCRNKVSCADILALATREVVVLTGGPSYPVELGRRDGRISTKASVQS-QLPQPEFNLNQLNGMFSRHGLSQTDMIALSGAHTIGFAHC 200          
BLAST of CF835865 vs. ExPASy Swiss-Prot
Match: PER19_ARATH (Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.373e-30
Identity = 84/211 (39.81%), Postives = 113/211 (53.55%), Query Frame = 2
Query:   50 FSFSSLMVTLALGFLVVFTGKSSA-----QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDT--SSFTGEKTSGPNIN-SARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSK--TASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSXAHTIGQARC 652
            F F  L  T+ +  +   T K  A     +LS ++YSK CP+L   V S       +      + +RL FHDCFV GCDGSIL++    S    E+ +  N      GF+ +   K+ VE  CP +VSC+DILAIAAR  + + GGP + VK GR D K  TA     N   IP   ST+  LI  F +KGL+ +++V LS +HTIG A C
Sbjct:   12 FFFLFLTSTILISPVQPTTSKPPAPRPHRELSADYYSKKCPQLETLVGSVTSQRFKEVPISAPATIRLFFHDCFVEGCDGSILIETKKGSKKLAEREAYENKELREEGFDSIIKAKALVESHCPSLVSCSDILAIAARDFIHLAGGPYYQVKKGRWDGKRSTAKNVPPN---IPRSNSTVDQLIKLFASKGLTVEELVVLSGSHTIGFAHC 219          
BLAST of CF835865 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.727e-29
Identity = 70/177 (39.55%), Postives = 101/177 (57.06%), Query Frame = 2
Query:  125 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTSGPNIN-SARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSXAHTIGQARC 652
            L+ ++Y KTCP     V+  V     ++    A  LRL FHDCF+ GCD S+L+   S    E+    N +     F++V  IK+ +E  CPGVVSCADILA A R  V ++GGP + VKLGR+D    S A    G +P    ++ ++++ F+  G + K++VALS  HTIG + C
Sbjct:   26 LTKDYYQKTCPDFNKIVRETVTPKQGQQPTTAAGTLRLFFHDCFMEGCDASVLIATNSFNKAERDDDLNESLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGPFYEVKLGRKDG-FESKAHKVKGNLPLANQSVPDMLSIFKKNGFTLKELVALSGGHTIGFSHC 201          
BLAST of CF835865 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.075e-29
Identity = 72/178 (40.45%), Postives = 104/178 (58.43%), Query Frame = 2
Query:  125 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSXAHTIGQARC 652
            LS ++Y KTCPK+   V+S++ S    +    A+LLRL FHDC V GCD SILL+      FT E  S  N    R  ++V  IK+ +E  CP  VSC+D++ +AAR +VA+ GGP  +V LGR+DS +          +PP T+ +   ++ F  KG++ ++ VA+  AHTIG   C
Sbjct:   38 LSYSYYEKTCPKVEEIVRSSLSSMFILDPTSPAALLRLMFHDCQVQGCDASILLEPIRDQQFT-ELDSAKNFG-IRKRDLVGSIKTSLELECPKQVSCSDVIILAARDAVALTGGPLISVPLGRKDSLSTPSKHVADSELPPSTADVDTTLSLFANKGMTIEESVAIMGAHTIGVTHC 213          
BLAST of CF835865 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.146e-27
Identity = 63/177 (35.59%), Postives = 98/177 (55.37%), Query Frame = 2
Query:  125 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSXAHTIGQARCI 655
            L  NFY  TCP+  + V+  V+    + +    S LR  FHDC V  CD S+LLD T    GEK    +    R F  +++IK  +E+ CPGVVSC+DIL ++AR  +  +GGP   +K GRRD   +      S  +P    ++S ++ +F++ G+    +VAL  +H++G+  C+
Sbjct:   31 LMMNFYKDTCPQAEDIVREQVKLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRRELGEKEHDRSFG-LRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIPLKTGRRDGLKSRTDMLES-YLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCV 205          
BLAST of CF835865 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.426e-27
Identity = 65/181 (35.91%), Postives = 101/181 (55.80%), Query Frame = 2
Query:  116 SAQLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWN-VKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSXAHTIGQARCI 655
            + +L  N+Y ++CPK    ++  V++   K      S LR  FHDC V  CD S+LL+       E+ S  +    R F+ V  IK  +EK CP  VSCADI+A++AR  + +L GP    +K GRRDS+ + L    + +IP    +LS++I+ F + G+  +  VAL  AH++G+  C+
Sbjct:   27 NGELEMNYYKESCPKAEEIIRQQVETLYYKHGNTAVSWLRNLFHDCVVKSCDASLLLETARGVESEQKSKRSFGM-RNFKYVKIIKDALEKECPSTVSCADIVALSARDGIVMLKGPKIEMIKTGRRDSRGSYLGDVET-LIPNHNDSLSSVISTFNSIGIDVEATVALLGAHSVGRVHCV 205          
BLAST of CF835865 vs. ExPASy Swiss-Prot
Match: PER26_ARATH (Probable peroxidase 26 OS=Arabidopsis thaliana GN=PER26 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.161e-26
Identity = 65/187 (34.76%), Postives = 104/187 (55.61%), Query Frame = 2
Query:   98 VFTGKSSAQLSTNFYS--KTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSXAHTIGQARC 652
            +  G S  +L+ ++Y    TC    N V+  V+     ++ +   LLRL + DCFV+GCD S+LL+  +S    +   P      GF ++D IK  +E+ CPGVVSCADIL +A R +V + G PS+ V  GRRD  T+     +   +P P+ +    ++ F+++GL+  DM  L  +H++G+  C
Sbjct:   26 IVMGPSMQKLTWHYYKVYNTCENAENFVRHQVEIFYKNDKSIAPKLLRLLYSDCFVSGCDASVLLEGPNS----EKMAPQNRGLGGFVLIDKIKIVLEQRCPGVVSCADILNLATRDAVHLAGAPSYPVFTGRRDGLTSDKQTVD---LPSPSISWDQAMSYFKSRGLNVLDMATLLGSHSMGRTHC 205          
BLAST of CF835865 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.686e-26
Identity = 66/170 (38.82%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  143 SKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSXAHTIGQARC 652
            + TC      ++  V+     +  +   LLRL + DC VNGCDGSILL   +S   E+T+ P      GF ++D IK  +E  CPGVVSCADIL +A R +V + G PS+ V  GRRD  T +  A +   +P P+ ++   +  F++KGL   DM  L  AH++G+  C
Sbjct:   43 TNTCDDAETYIRYQVEKFYKNDSSIAPKLLRLLYSDCMVNGCDGSILLQGPNS---ERTA-PQNRGLGGFVIIDKIKQVLESRCPGVVSCADILNLATRDAVHMAGAPSYPVFTGRRDGGTLNADAVD---LPSPSISVDESLAYFKSKGLDVLDMTTLLGAHSMGKTHC 205          
BLAST of CF835865 vs. ExPASy Swiss-Prot
Match: PERX_WHEAT (Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 2
Query:  344 RGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNL 568
            RGF V+D IK+++E +C   VSCADIL +AAR SV  LGGPSW V LGRRDS  A+ A ANS  +P   S+ S L
Sbjct:    3 RGFGVIDSIKTQIEAICNQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANEAEANSD-LPGFNSSRSEL 76          
BLAST of CF835865 vs. ExPASy Swiss-Prot
Match: APX6_ARATH (Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.478e-14
Identity = 58/161 (36.02%), Postives = 86/161 (53.42%), Query Frame = 2
Query:  173 VKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTS-----SFTGEKTSGPNINSARGFEVVDDIKSKVEKVCPGVVSCADILAIAARHSVAILGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSXAHTIG 640
            +++ ++  V+K +  G  +LRL FHD       G+  LDD S     S   E     NI   +  +V+   K KV+++ P  VS AD++++A   +V+I GGP+  V LGR DS          G +PP T + S L   F+ KG S +++VALS AHTIG
Sbjct:  101 MQNEIRKVVTKGKAAG--VLRLVFHDA------GTFELDDHSGGINGSIAYELERPENIGLKKSLKVLAKAKVKVDEIQP--VSWADMISVAGSEAVSICGGPTIPVVLGRLDSAQPD----PEGKLPPETLSASGLKECFKRKGFSTQELVALSGAHTIG 247          
The following BLAST results are available for this feature:
BLAST of CF835865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
PER45_ARATH4.207e-3041.58Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=... [more]
PER19_ARATH9.373e-3039.81Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=... [more]
PER41_ARATH2.727e-2939.55Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER29_ARATH6.075e-2940.45Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PER42_ARATH1.146e-2735.59Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH7.426e-2735.91Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER26_ARATH2.161e-2634.76Probable peroxidase 26 OS=Arabidopsis thaliana GN=... [more]
PER61_ARATH3.686e-2638.82Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PERX_WHEAT6.521e-1557.33Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV... [more]
APX6_ARATH2.478e-1436.02Putative L-ascorbate peroxidase 6 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835865 ID=CF835865; Name=CF835865; organism=Citrus sinensis; type=EST; length=660bp
CTTCACACTGTTAATTAAATTTAATTAACAAAAGGAGCAAAAAATGGCTT
TTTCTTTTTCTTCTTTAATGGTGACTTTGGCATTAGGGTTTCTTGTGGTT
TTCACAGGCAAATCAAGTGCTCAACTCTCTACTAATTTCTATTCAAAAAC
TTGTCCAAAACTGTTGAATACGGTTAAATCTGCTGTTCAATCAGCAGTTT
CAAAAGAGCGTCGGATGGGCGCTTCTCTCCTTCGCTTACACTTTCATGAC
TGTTTCGTCAACGGGTGTGATGGGTCAATTCTACTAGATGACACGTCATC
TTTCACTGGTGAGAAGACTTCAGGACCAAATATCAATTCAGCAAGAGGAT
TTGAAGTTGTTGATGATATAAAATCAAAGGTAGAGAAAGTTTGCCCAGGA
GTCGTTTCATGCGCTGATATTTTAGCCATTGCTGCTCGGCATTCAGTTGC
AATTCTTGGAGGGCCAAGTTGGAATGTTAAACTTGGAAGAAGGGACTCCA
AAACAGCTAGCTTAGCTGCTGCTAATAGTGGTGTCATTCCTCCTCCTACC
TCCACTCTAAGCAACCTCATCAATAGATTCCAGGCTAAAGGTCTCTCTGC
CAAGGACATGGTTGCTTTATCCNGAGCGCATACAATTGGGCAAGCAAGGT
GTATAGCCTT
back to top