CF835869

Overview
NameCF835869
Unique NameCF835869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 243.047 bits (619), Expect = 1.193e-63
Identity = 122/214 (57.01%), Postives = 154/214 (71.96%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL+K V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q +AL+++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V  +DVKNVIIWGNHSS+QYPDVNHA V     E  V E +KDD
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDD 216          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.558e-63
Identity = 123/214 (57.48%), Postives = 153/214 (71.50%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL++ V+AT     A   +++AV+VG  PR+EGMERKD++  NV I+K+Q +ALE++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V     E  V E +KDD
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLQDVIATDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGTALEKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDD 216          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.921e-63
Identity = 122/214 (57.01%), Postives = 155/214 (72.43%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            EPV+VLVTGAAGQI Y+L+  IA+G + G DQP+IL +LDI P    L GV MEL D A PL+K V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q +AL +++  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA GQI+ KLNV   DVKNVIIWGNHSS+QYPD +HATVN    +    E VK+D
Sbjct:    3 EPVKVLVTGAAGQIAYSLLYGIAKGDVFGKDQPLILVLLDITPMMTVLEGVVMELQDCALPLLKEVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALNKYSKKSVKVIVVGNPANTNCLTAMKSAPSIPKENFSCLTRLDHNRAKGQIALKLNVASDDVKNVIIWGNHSSTQYPDASHATVNLQGKDVGAFEAVKND 216          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDHC_BOVIN (Malate dehydrogenase, cytoplasmic OS=Bos taurus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 7.733e-63
Identity = 121/214 (56.54%), Postives = 152/214 (71.03%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL+K V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +AL+++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V     E  V E +KDD
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDD 216          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDHC_ECHGR (Malate dehydrogenase, cytoplasmic OS=Echinococcus granulosus GN=MDH PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.838e-62
Identity = 115/213 (53.99%), Postives = 153/213 (71.83%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            P+RVL+TGAAGQI Y L  M+A G + G DQ +ILH+LDIP A   L+GV MEL D AF ++ G+V T    EA T +++A+MVG  PRK+GMER+D++S NV I+K Q  AL+++A    KVLVV NPANTN LI+ ++APSIP +N T LTRLDHNRA+ Q++ K  V  + VKNV IWGNHS+ Q+PD++HA V     + P +EL+ D+
Sbjct:    4 PLRVLITGAAGQIAYNLSNMVANGNLFGKDQQIILHLLDIPEAKTVLDGVVMELQDCAFTVLAGIVPTHCLKEAFTDIDVALMVGAMPRKQGMERRDLLSSNVKIFKEQGEALDKYAKKTVKVLVVGNPANTNCLIMSKYAPSIPKENFTALTRLDHNRAIYQVAAKAGVPNTCVKNVCIWGNHSNKQFPDLSHAVVTKDGKQHPAKELINDE 216          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 8.550e-62
Identity = 120/214 (56.07%), Postives = 152/214 (71.03%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            EP+RVLVTGAAGQI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PL+K V+AT     A   +++A++VG  PR++GMERKD++  NV I+K Q +ALE++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDV+HA V     E  V + +KDD
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALEKYAKKSVKVIVVGNPANTNCLTACKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVSHAKVKLHGKEVGVYDALKDD 216          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDHC_DICDI (Probable malate dehydrogenase 3 OS=Dictyostelium discoideum GN=mdhC PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.488e-61
Identity = 115/217 (53.00%), Postives = 148/217 (68.20%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            M+ E + VL+TGAAGQI Y+L+  + +G M G DQ + LH+LDIP   ++L G+ ME+ D A+PLI   V T D  EA TGV+ A++VG  PR+EGMER D++  N +I+K Q  AL +HA  N KVLVV NPANTNALI +  A  IP +N TCLTRLD NRA  QI+ K  V V DV NVIIWGNHSS+QYPD     +N + G+ P+   +KD+
Sbjct:    1 MSNEVINVLITGAAGQIAYSLIFNVCKGDMFGLDQRIKLHLLDIPQMVDSLKGIVMEIQDGAYPLIADTVITADVKEAFTGVHYAILVGAMPRREGMERADLLKANAAIFKVQGKALAEHANKNVKVLVVGNPANTNALIAQVSANGIPKENFTCLTRLDQNRAKSQIALKAGVNVKDVHNVIIWGNHSSTQYPDYRCGYINLSTGKTPISTAIKDE 217          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.238e-61
Identity = 119/214 (55.61%), Postives = 153/214 (71.50%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            EPV+VLVTGAAGQI Y+L+  IA+G + G DQP+IL +LDI P    L GV MEL D A PL+K V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q +AL +++  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KLNV   DVKNVIIWGNHSS+QYPD +HA+V     +    E VK+D
Sbjct:    3 EPVKVLVTGAAGQIAYSLLFGIAKGDVFGKDQPLILVLLDITPMMTVLEGVVMELQDCALPLLKEVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALNKYSKKSVKVIVVGNPANTNCLTALKSAPSIPKENFSCLTRLDHNRAKAQIALKLNVASDDVKNVIIWGNHSSTQYPDASHASVTLQGKDVGAFEAVKND 216          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.187e-59
Identity = 117/200 (58.50%), Postives = 144/200 (72.00%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            K+PVRV VTGAAGQIGY+L+  IA G MLG DQPVIL +L+I PA +ALNGV MEL D AFPL+  V+ + D + A    + A++VG  PRK GMER D++  N  I+K Q  AL   A+ N KVLVV NPANTNALI ++ AP +  K  T + RLDHNRAL Q++EK    VSD+KNV IWGNHSS+QYPD++ ATVN
Sbjct:    4 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGQDQPVILQLLEITPALKALNGVVMELRDGAFPLLADVITSDDPMVAFKDADYALLVGAMPRKAGMERGDLLGANGGIFKPQGEALGAVASRNVKVLVVGNPANTNALIAQQNAPDLDPKCFTAMVRLDHNRALSQLAEKTGAAVSDIKNVTIWGNHSSTQYPDLSQATVN 203          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.848e-59
Identity = 119/215 (55.35%), Postives = 148/215 (68.84%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            K+PVRV VTGAAG I YA++  IA G MLG DQPVIL +L+I PA +AL GV MEL D AFPL+ GVV T DA  A    + A++VG  PR  GMERKD++  N +I+ AQ  AL + A+ + KVLVV NPANTNALI +  AP +  +N T +TRLDHNR + Q++E+ N  V+DVK +IIWGNHSS+QYPD+   TVN     KP  E V  D
Sbjct:    2 KQPVRVAVTGAAGNISYAMLFRIASGEMLGKDQPVILQLLEITPALDALKGVVMELEDCAFPLLAGVVQTDDATVAFKDADYALLVGARPRGPGMERKDLLEANAAIFSAQGKALNEVASRDVKVLVVGNPANTNALIAQRNAPDLDPRNFTAMTRLDHNRGMAQLAEETNSTVNDVKKMIIWGNHSSTQYPDLTECTVN----GKPALEQVDRD 212          
The following BLAST results are available for this feature:
BLAST of CF835869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
MDHC_HUMAN1.193e-6357.01Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
MDHC_MOUSE1.558e-6357.48Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_XENTR5.921e-6357.01Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]
MDHC_BOVIN7.733e-6356.54Malate dehydrogenase, cytoplasmic OS=Bos taurus GN... [more]
MDHC_ECHGR3.838e-6253.99Malate dehydrogenase, cytoplasmic OS=Echinococcus ... [more]
MDHC_FELCA8.550e-6256.07Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_DICDI2.488e-6153.00Probable malate dehydrogenase 3 OS=Dictyostelium d... [more]
MDHC_XENLA7.238e-6155.61Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDH_DEIRA5.187e-5958.50Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDH_PSYWF8.848e-5955.35Malate dehydrogenase OS=Psychrobacter sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835869 ID=CF835869; Name=CF835869; organism=Citrus sinensis; type=EST; length=730bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
GCCTGTCCGTGAGCTTGTCAAGGATGATGC
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