CF835869

Overview
NameCF835869
Unique NameCF835869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_NOCFA (Malate dehydrogenase OS=Nocardia farcinica GN=mdh PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.790e-51
Identity = 103/212 (48.58%), Postives = 137/212 (64.62%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            PV V VTGAAGQI Y L+  IA G MLG   P+ L +L+IP A  +L GV MEL D AFPL+  +  + D      G N+A++VG  PR  GMER D+++ N  I+  Q  A+   AA + KVLVV NPANTNA I    AP +PA+  T +TRLDHNRA+ Q+++K     +++  + +WGNHS++QYPD+ HATV   AG +P RELV +
Sbjct:    9 PVTVTVTGAAGQIAYGLLFRIASGAMLGPHTPIRLRLLEIPAAVASLEGVAMELEDGAFPLLDAIDISDDPWTGFAGANVALLVGARPRTAGMERADLLAANGPIFTDQGQAINAVAADDVKVLVVGNPANTNAFIAMSNAPDVPAERFTAMTRLDHNRAIAQLAKKTGAPATEIHRIAVWGNHSATQYPDLTHATV---AG-RPARELVDE 216          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.868e-51
Identity = 107/216 (49.54%), Postives = 144/216 (66.67%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AFP + GV    DA +   GVN+A++VG  PR  GMER D++S N +I+ AQ  AL + AA + ++ V  NPANTNALI    AP IP    + LTRLDHNRA+ Q++ K    V+D+K + IWGNHS++QYPDV HA +    G +   E+V D
Sbjct:    1 MSSTPLKVAVTGAAGQIGYSLLFRLASGSLLG-DRPIELRLLEITPALKALEGVVMELDDCAFPNLAGVQIGDDAEQIFDGVNLALLVGARPRGPGMERGDLLSANGAIFTAQGKALNKVAADDVRIGVTGNPANTNALIAMTNAPDIPQARFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDVFHAEI----GGRNAAEVVGD 211          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.158e-50
Identity = 100/202 (49.50%), Postives = 128/202 (63.37%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG 695
            P  V VTGAAG IGYA +  IA G MLG D P+ L +L+IPPA  A  G  MEL D+AFPL+  V    D      G ++A+++G  PR +GMER D+++ N  I+  Q  A+ Q AA   +VLVV NPANTNAL+    AP +PA+  T LTRLDHNRA+ Q++      V D+  V IWGNHSS+QYPD+ HA V   +G
Sbjct:    7 PAVVTVTGAAGSIGYAALFRIAAGAMLGPDTPIRLRLLEIPPAVSAAEGTAMELDDSAFPLLLDVEVHDDPKRGFDGTDVALLIGSRPRSKGMERGDLLAANGQIFTVQGRAINQVAADGVRVLVVGNPANTNALVAANNAPDVPAERFTALTRLDHNRAIAQLARHSGAAVRDISRVTIWGNHSSTQYPDIFHARVGDRSG 208          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_MYCLE (Malate dehydrogenase OS=Mycobacterium leprae GN=mdh PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.513e-50
Identity = 106/216 (49.07%), Postives = 142/216 (65.74%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            M+  P++V VTGAAGQIGY+L+  +A G +LG D+P+ L +L+I PA +AL GV MEL D AF L+ GV    D  +   GVN+A++VG  PR  GMER D++  N +I+ AQ  AL   AA + +V V  NPANTNALI    AP IP +  + LTRLDHNRA+ Q++ K    V+D++ + IWGNHS++QYPDV HA +    G K   E+V D
Sbjct:    1 MSPRPLKVAVTGAAGQIGYSLLFRLASGSLLGLDRPIELRLLEIEPALKALEGVVMELDDCAFLLLAGVEIGADPNKVFDGVNLALLVGARPRGPGMERGDLLEANGAIFTAQGKALNAVAAADIRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAIAQLATKTGSAVTDIRKMTIWGNHSATQYPDVFHAEI----GGKNAAEVVGD 212          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_RHOSR (Malate dehydrogenase OS=Rhodococcus sp. (strain RHA1) GN=mdh PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.976e-50
Identity = 100/202 (49.50%), Postives = 129/202 (63.86%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG 695
            P  V VTGAAG IGYA +  IA G MLG D P+ L +L+IP A  A  G  MEL D+AFPL++ +    D      G ++A+++G  PR +GMER D+++ N  I+  Q  AL Q AA   +VLVV NPANTNAL+    AP IPA+  T LTRLDHNRA+ Q++      V D++ V IWGNHSS+QYPD+ HA V   +G
Sbjct:    7 PAVVTVTGAAGSIGYASLFRIAAGEMLGPDTPIRLRLLEIPSAVSAAEGTAMELDDSAFPLLRDIEVHDDPKRGFDGTDVALLIGSRPRSKGMERGDLLAANGQIFTVQGRALNQVAADGVRVLVVGNPANTNALVAANNAPDIPAERFTALTRLDHNRAIAQLARHSGAAVKDIRRVAIWGNHSSTQYPDIFHARVGDRSG 208          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_XYLFA (Malate dehydrogenase OS=Xylella fastidiosa GN=mdh PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.370e-50
Identity = 108/216 (50.00%), Postives = 142/216 (65.74%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            K  VRV VTGAAGQIGY+L+  IA G M G D+PVIL ML++P   A  AL GV MEL D AFPL+ G+V T +   A    ++A++VG  PR  GMERKD++ +N  I+ AQ +AL + A  + KVLVV NPANTNA I  + AP +  K+ T + RLDHNRAL Q+S KL+  V++++ +I+WGNHS + YPD   AT    A   P+ E + D
Sbjct:    2 KSLVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVGTDNPDIAFKDADVALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKHFTAMLRLDHNRALSQLSTKLSKPVANIEKLIVWGNHSPTMYPDYRFAT----ADGTPIIEAIND 213          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_POLNA (Malate dehydrogenase OS=Polaromonas naphthalenivorans (strain CJ2) GN=mdh PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.370e-50
Identity = 106/218 (48.62%), Postives = 144/218 (66.06%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAA--EALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            M+K+PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P     +AL GV MEL D AFPL+  + A +D + A    + A++VG  PR  GMER ++++ N +I+ AQ  AL   A+ + +VLVV NPANTNA I  + AP +PAKN T + RLDHNRA  QI+ K    V+D++ + +WGNHS + Y D   AT+    G + V +++ D
Sbjct:    1 MSKKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEGPQKALKGVMMELDDCAFPLLVEMTAHSDPMTAFKDADYALLVGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRDVRVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRAASQIAAKTGKAVADIEKLTVWGNHSPTMYADYRFATI----GGESVAQMIND 214          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_CORGL (Malate dehydrogenase OS=Corynebacterium glutamicum GN=mdh PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.370e-50
Identity = 102/211 (48.34%), Postives = 139/211 (65.88%), Query Frame = 3
Query:   96 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            +V VTGAAGQI Y+L+  IA G + GTD PV L +L+IP A     GV MEL+D+AFPL++ +  T DA EA  G N A +VG  PR +G ER D+++ N  I+  Q  A+  +AA + +VLVV NPANTNALI    AP +PA     + RLDHNRA+ Q++ KL    ++  N+++WGNHS++Q+PD+ +ATV    GEK V +LV  D
Sbjct:   11 KVTVTGAAGQISYSLLWRIANGEVFGTDTPVELKLLEIPQALGGAEGVAMELLDSAFPLLRNITITADANEAFDGANAAFLVGAKPRGKGEERADLLANNGKIFGPQGKAINDNAADDIRVLVVGNPANTNALIASAAAPDVPASRFNAMMRLDHNRAISQLATKLGRGSAEFNNIVVWGNHSATQFPDITYATV---GGEK-VTDLVDHD 217          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_MYCVP (Malate dehydrogenase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.508e-50
Identity = 99/202 (49.01%), Postives = 126/202 (62.38%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAG 695
            PV V VTGAAG IGYA +  IA G MLG   PV L +L++P A  A  GV MEL D AFPL+ G     D   A  GV++A+++G  PR +GMER D++  N  I+     AL   A+P+ +VLVV NPANTNAL+    AP IPA   T LTRLDHNRA+   +    V V+++  + IWGNHS +QYPD+ HA V   +G
Sbjct:    8 PVTVAVTGAAGHIGYAALFRIAAGAMLGHTTPVTLRLLELPDAVRAAEGVVMELEDGAFPLLAGTEIYDDPTRAFDGVDVALLIGARPRTKGMERADLLGANAEIFATSGKALNAGASPDVRVLVVGNPANTNALVASAHAPDIPADRFTALTRLDHNRAVAATARHSGVPVTEISRMTIWGNHSPTQYPDIFHAVVGGRSG 209          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_CORGB (Malate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=mdh PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.805e-50
Identity = 101/211 (47.87%), Postives = 139/211 (65.88%), Query Frame = 3
Query:   96 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            +V VTGAAGQI Y+L+  IA G + GT+ PV L +L+IP A     GV MEL+D+AFPL++ +  T DA EA  G N A +VG  PR +G ER D+++ N  I+  Q  A+  +AA + +VLVV NPANTNALI    AP +PA     + RLDHNRA+ Q++ KL    ++  N+++WGNHS++Q+PD+ +ATV    GEK V +LV  D
Sbjct:   11 KVTVTGAAGQISYSLLWRIANGEVFGTETPVELKLLEIPQALGGAEGVAMELLDSAFPLLRNITITADANEAFDGANAAFLVGAKPRGKGEERADLLANNGKIFGPQGKAINDNAADDIRVLVVGNPANTNALIASAAAPDVPASRFNAMMRLDHNRAISQLATKLGRGSAEFNNIVVWGNHSATQFPDITYATV---GGEK-VTDLVDHD 217          
The following BLAST results are available for this feature:
BLAST of CF835869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
MDH_NOCFA6.790e-5148.58Malate dehydrogenase OS=Nocardia farcinica GN=mdh ... [more]
MDH_NOCSJ8.868e-5149.54Malate dehydrogenase OS=Nocardioides sp. (strain B... [more]
MDH_RHOOB1.158e-5049.50Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]
MDH_MYCLE1.513e-5049.07Malate dehydrogenase OS=Mycobacterium leprae GN=md... [more]
MDH_RHOSR1.976e-5049.50Malate dehydrogenase OS=Rhodococcus sp. (strain RH... [more]
MDH_XYLFA3.370e-5050.00Malate dehydrogenase OS=Xylella fastidiosa GN=mdh ... [more]
MDH_POLNA3.370e-5048.62Malate dehydrogenase OS=Polaromonas naphthalenivor... [more]
MDH_CORGL3.370e-5048.34Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_MYCVP7.508e-5049.01Malate dehydrogenase OS=Mycobacterium vanbaalenii ... [more]
MDH_CORGB9.805e-5047.87Malate dehydrogenase OS=Corynebacterium glutamicum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835869 ID=CF835869; Name=CF835869; organism=Citrus sinensis; type=EST; length=730bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
GCCTGTCCGTGAGCTTGTCAAGGATGATGC
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