CF835869

Overview
NameCF835869
Unique NameCF835869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.565e-39
Identity = 93/211 (44.08%), Postives = 127/211 (60.19%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            V V V+GAAG I   L+  +A G + G DQP+ L +L    + +AL GV MEL D+ +PL++ V    D       V+ A+++G  PR  GMER  ++  N  I+  Q  AL   A+ N +VLVV NP NTNALI  + AP+IPAKN   LTRLD NRA  Q++ K  V    V NV IWGNHS++Q PD  +A ++     +PV+E++KD
Sbjct:   90 VNVAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYVVFQDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASRNDEVLVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKID----GRPVKEVIKD 296          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.017e-38
Identity = 90/214 (42.06%), Postives = 126/214 (58.88%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            K+ + + V+GAAG I   L+  +A G + G DQP+ L +L    +  AL GV MEL D+ +PL++ V    D  +       A+++G  PR  GMER D++  N  I+  Q  AL   A+ N KV+VV NP NTNALI  + AP+IPAKN   LTRLD NRA  Q++ K  V    V N+ IWGNHS++Q PD  +A ++      PV+ ++KD
Sbjct:   95 KKMITIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSFNALEGVAMELEDSLYPLLRAVSIGIDPYDIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHGLTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKIDGL----PVKTVIKD 304          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_CHLMU (Malate dehydrogenase OS=Chlamydia muridarum GN=mdh PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38
Identity = 82/216 (37.96%), Postives = 117/216 (54.17%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            M  + V V VTG  GQI Y  +  +A G + G D  + L + DIP    +L+GV+MEL D AFPL++ V  TT   +A   ++ A ++G  PR  GMER+D++ KN  I+  Q   L   A    K+ VV NP NTN  I    AP +  KN   + RLD NR    ++ +  V +S V  V++WGNHS+ Q PD   A ++     +P+ E + D
Sbjct:    1 MFSQTVSVAVTGGTGQIAYCFLFALAHGDIFGPDTGIDLRIYDIPGTERSLSGVRMELDDGAFPLLQRVQVTTSLHDAFDDIDAAFLIGSVPRGPGMERRDLLKKNGEIFATQGKVLNTAAKREAKIFVVGNPVNTNCWIAMNHAPRLLRKNFHAMLRLDQNRMHSMLAHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALIH----GRPIVETIAD 212          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_CHLFF (Malate dehydrogenase OS=Chlamydophila felis (strain Fe/C-56) GN=mdh PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.469e-37
Identity = 78/211 (36.97%), Postives = 119/211 (56.40%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            V V VTG  GQI Y+ +  +A G + G+D  + L + D+P     L+G++MEL D A+PL++ +  TT   +A  G++ A ++G  PR  GMER D++ +N  I+  Q S L   A  + K+ VV NP NTN  I    AP +  +N   + RLD NR    ++ +  V + +V NV+IWGNHS+ Q PD   + ++     KP  E++ D
Sbjct:    7 VSVAVTGGTGQIAYSFLFALAHGDVFGSDCGIDLRVYDLPGLERVLSGIRMELDDCAYPLLQSLRVTTSLEDAFDGIDAAFLIGAAPRGPGMERSDLLKRNGEIFSLQGSVLNTSAKRDAKIFVVGNPVNTNCWIAMSRAPKLNRRNFHSMLRLDQNRMQAMLAHRAQVPLDEVTNVVIWGNHSAKQVPDFTQSLIS----GKPAVEVISD 213          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_CHLAB (Malate dehydrogenase OS=Chlamydophila abortus GN=mdh PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.288e-37
Identity = 79/211 (37.44%), Postives = 119/211 (56.40%), Query Frame = 3
Query:   93 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            V V VTG  GQI Y+ +  +A G + G+D  + L + D+P     L+GV+MEL D A+PL++ +  TT   +A  G++ A ++G  PR  GMER D++ +N  I+  Q S L   A  + K+ VV NP NTN  I    AP +  +N   + RLD NR    ++ +  V + +V +V+IWGNHS+ Q PD   A ++     KP  E++ D
Sbjct:    9 VSVAVTGGTGQIAYSFLFALAHGDVFGSDCGIDLRIYDLPGLERVLSGVRMELDDGAYPLLQSLRVTTSLEDAFDGIDAAFLIGAAPRGPGMERSDLLKRNGEIFSLQGSVLNTSAKRDAKIFVVGNPVNTNCWIAMSQAPRLNRRNFHSMLRLDQNRMHTMLAHRAEVPLDEVSHVVIWGNHSAKQVPDFTQALIS----GKPAVEVIGD 215          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_STEMA (Malate dehydrogenase (Fragment) OS=Stenotrophomonas maltophilia GN=mdh PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.873e-25
Identity = 64/109 (58.72%), Postives = 76/109 (69.72%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSI 404
            K PVRV VTGAAGQIGYAL+  IA G MLG DQPVIL +L++P   A  AL GV MEL D AFPL+ G+V T DA  A    +IA++VG  PR  GMERKD++ +N  I
Sbjct:    2 KAPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLELPVDKAQAALKGVMMELEDCAFPLLAGMVGTDDAEVAFKDADIALLVGARPRGPGMERKDLLLENAKI 110          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH1B_BRAFL (Putative malate dehydrogenase 1B OS=Branchiostoma floridae GN=MDH1B PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 64/200 (32.00%), Postives = 107/200 (53.50%), Query Frame = 3
Query:   87 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 683
            +P+ V V  AA    Y ++P +  G +L  ++ + LH+ D     E L G++ME+ D +FP +K +  TTD   A    +IA+++  F +    +    M   VS YK  A A+ Q A+ + +VLV    P N+   IL +  PSIP +NI  + ++   +A   ++++L V  + V +VI+WGN   + Y DV+ A V+
Sbjct:  130 KPLHVCVINAARSPAYHVLPSLVNGKIL-REEEIALHLHDSEENLEKLKGLEMEVFDLSFPFLKEISVTTDLPTAFQNAHIAIVLDDFDQGGKEDAIGDMETKVSFYKRVAEAINQTASKDIRVLVAGTGPLNSLVSILIDHTPSIPRQNIAAVAQVKERQAKSLLAKRLTVNSAGVCDVIVWGNVGGTTYTDVSRARVH 328          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH1B_BOVIN (Putative malate dehydrogenase 1B OS=Bos taurus GN=MDH1B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.263e-16
Identity = 54/198 (27.27%), Postives = 95/198 (47.98%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP-ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            P++V +T A+    Y L+P++  G + G    + +++ D     E L   K E  D A P ++ V   T A EA  G ++ +++     KE    +D +     + +   S +E++A    K++V      N    +L ++AP+  A NI  +      +A   ++ KL +  S +K+VIIWGN S + Y D+  A V
Sbjct:  131 PLQVWITSASSLACYHLIPILTSGEVFGPQMEISINLFDNKHTEEKLISHKQEAEDLASPCLQSVSICTQAEEAFHGAHVIIILDDHVDKEINSLEDCIRSRAPLCQLYGSLIEKNAHNFAKIIVGGKTFVNLKTALLMKYAPTF-AHNIIAVALGVEGQAKAALARKLKITPSCIKDVIIWGNISGNNYVDLRKAKV 327          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH1B_HUMAN (Putative malate dehydrogenase 1B OS=Homo sapiens GN=MDH1B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 53/198 (26.77%), Postives = 93/198 (46.97%), Query Frame = 3
Query:   90 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANP-ANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            P++V +T A+    Y L+P++  G + G    + + + D   A E L  + +E  D A P+++ V   T   EA    ++ V++     KE    +D +   V + +     +E++A  + +V+V      N   ++L  +AP I A NI  +       A   ++ KL    S +K+VIIWGN S + Y D+    V
Sbjct:  131 PLQVWITSASAPACYNLIPILTSGEVFGMHTEISITLFDNKQAEEHLKSLVVETQDLASPVLRSVSICTKVEEAFRQAHVIVVLDDSTNKEVFTLEDCLRSRVPLCRLYGYLIEKNAHESVRVIVGGRTFVNLKTVLLMRYAPRI-AHNIIAVALGVEGEAKAILARKLKTAPSYIKDVIIWGNISGNNYVDLRKTRV 327          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH2_AQUAE (Malate dehydrogenase 2 OS=Aquifex aeolicus GN=mdh2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 57/217 (26.27%), Postives = 104/217 (47.93%), Query Frame = 3
Query:   69 SELMAKEPVRVLVTGAAGQ-IGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVREL 716
            S LM K  + V+  G  G+ + Y L  +    V L       L     P  A+AL+  +M ++      +KG+    +  E   G +I V+  G PR+EGM R+D++ +N+ I K    A++++A  +  ++VV+NP +T      +     P + I     LD  R    + EK+ +  +D++ +++ G H     P  +H+ +    G+KP+ E+
Sbjct:    8 SFLMKKPKISVIGAGKVGENVAYLLTILGLGDVYLFARYKKGLE----PAKAKALDLKQMAVLMDIDINVKGISYDKEGFEELKGSDIVVITAGIPRREGMSREDLLYENLKILKKFTDAIKEYAKDSI-IIVVSNPVDTLTYATIKLTGFEPRRVIGMAGVLDSARFKNFVKEKIGISNADIRTLVL-GTHGDLMVPVTSHSFI----GDKPIEEV 214          
The following BLAST results are available for this feature:
BLAST of CF835869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
MDHP_MAIZE4.565e-3944.08Malate dehydrogenase [NADP], chloroplastic OS=Zea ... [more]
MDHP_MESCR1.017e-3842.06Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDH_CHLMU8.610e-3837.96Malate dehydrogenase OS=Chlamydia muridarum GN=mdh... [more]
MDH_CHLFF1.469e-3736.97Malate dehydrogenase OS=Chlamydophila felis (strai... [more]
MDH_CHLAB7.288e-3737.44Malate dehydrogenase OS=Chlamydophila abortus GN=m... [more]
MDH_STEMA2.873e-2558.72Malate dehydrogenase (Fragment) OS=Stenotrophomona... [more]
MDH1B_BRAFL2.689e-2332.00Putative malate dehydrogenase 1B OS=Branchiostoma ... [more]
MDH1B_BOVIN9.263e-1627.27Putative malate dehydrogenase 1B OS=Bos taurus GN=... [more]
MDH1B_HUMAN7.841e-1526.77Putative malate dehydrogenase 1B OS=Homo sapiens G... [more]
MDH2_AQUAE3.295e-1326.27Malate dehydrogenase 2 OS=Aquifex aeolicus GN=mdh2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835869 ID=CF835869; Name=CF835869; organism=Citrus sinensis; type=EST; length=730bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
GCCTGTCCGTGAGCTTGTCAAGGATGATGC
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