CF835869

Overview
NameCF835869
Unique NameCF835869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_TERTT (Malate dehydrogenase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=mdh PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.368e-56
Identity = 110/199 (55.28%), Postives = 137/199 (68.84%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 680
            K PVRV VTGAAGQI Y+L+  IA G MLG DQPVIL ML+I PA EAL GV MEL D AFPL+  +V T DA  A    + A++VG  PR  GMER D++  N +I+  Q  A+  HA+   KVLVV NPANTNALI +  AP I  +  T +TRLDHNR + Q++ KL+V ++D+  + IWGNHSS+QYPD+ HA V
Sbjct:    2 KAPVRVTVTGAAGQISYSLLFRIAAGEMLGADQPVILQMLEITPALEALKGVAMELDDCAFPLLHSMVCTDDANVAFKDSDYALLVGARPRGPGMERNDLLEANAAIFSVQGKAINDHASRGIKVLVVGNPANTNALIAQRNAPDIDPRQFTAMTRLDHNRGMSQLASKLDVSINDITKMTIWGNHSSTQYPDLYHALV 200          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.368e-56
Identity = 112/217 (51.61%), Postives = 145/217 (66.82%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            M + PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+IP   +A  G  MEL D AFPL++G+  T D      G N+A++VG  PR +GMER D+++ N  I+K Q  A+  HAA + KVLVV NPANTNALI +  AP +PA+  T +TRLDHNRA+ Q++ K    VSD+K + IWGNHS++QYPD+ HA +   AG K   E V D+
Sbjct:    1 MTRTPVNVTVTGAAGQIGYALLFRIASGHLLGPDVPVNLRLLEIPQGLKAAEGTAMELDDCAFPLLRGIEITDDPNVGFAGANVALLVGARPRTKGMERGDLLAANGGIFKPQGKAINDHAADDIKVLVVGNPANTNALIAQAAAPDVPAERFTAMTRLDHNRAISQLAAKTGAAVSDIKKLTIWGNHSATQYPDIFHAEI---AG-KNAAETVNDE 213          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_STRAW (Malate dehydrogenase OS=Streptomyces avermitilis GN=mdh PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.368e-56
Identity = 113/217 (52.07%), Postives = 149/217 (68.66%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            M + PV V VTGAAGQIGYAL+  IA G +LG D PV L +L+I PA +A  G  MEL D AFPL++G+  T D   A  G N+ ++VG  PR +GMER D++S N  I+K Q  A+  +AA + K+LVV NPANTNALI +  AP +PA+  T +TRLDHNRAL Q+++K    V+D+K + IWGNHS++QYPD+ HA+V   AG K   E+V D+
Sbjct:    1 MTRTPVNVTVTGAAGQIGYALLFRIASGQLLGADVPVKLRLLEITPALKAAEGTAMELDDCAFPLLQGIDITDDPNVAFDGTNVGLLVGARPRTKGMERGDLLSANGGIFKPQGKAINDNAADDVKILVVGNPANTNALIAQAAAPDVPAERFTAMTRLDHNRALTQLAKKTGSTVADIKRLTIWGNHSATQYPDIFHASV---AG-KNAAEVVNDE 213          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_HALHL (Malate dehydrogenase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mdh PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.368e-56
Identity = 110/215 (51.16%), Postives = 144/215 (66.98%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV-NTAAGEKPVRELVKD 725
            K PVRV VTGAAGQIGY+L+  IA G MLG DQPV L +L+IP A EAL G  MEL D AFPL+ G++AT  A EA    +  ++VG  PR  GMERKD++  N +I+ AQ  AL   A  + KVL V NPANTNALI +  AP +  +N T +TRLDHNRAL Q+S K+    ++++ + +WGNHS++QYPD++H T+    A ++     VKD
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVTLQLLEIPQAQEALQGTVMELEDCAFPLVDGIIATDSAEEAFRDADYVLLVGAKPRGPGMERKDLLEANAAIFSAQGQALNAVAKRDVKVLAVGNPANTNALITQRNAPDLDPRNFTAMTRLDHNRALAQLSNKVGCHSTEIRGLAVWGNHSATQYPDISHCTIQGRPAADQVEHAWVKD 216          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.156e-56
Identity = 112/212 (52.83%), Postives = 142/212 (66.98%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELV 719
            K PVRV VTGAAGQI Y+L+  IA G MLG DQPVIL +L+I PA +AL GV MEL D AFPL+ G+V T D   A    + A++VG  PR  GMERKD+++ N +I+  Q  A+  HA+ N KVLVV NPANTNALI +  AP I  +  T +TRLDHNRAL Q++ K    ++++   +IWGNHSS+QYPD++    NT    KP   LV
Sbjct:    2 KAPVRVTVTGAAGQISYSLLFRIAAGDMLGKDQPVILQLLEITPALKALQGVAMELDDCAFPLLAGIVTTDDPSVAFKDSDYALLVGARPRGPGMERKDLLAANAAIFSVQGKAINDHASKNIKVLVVGNPANTNALIAQRNAPDISPRQFTAMTRLDHNRALSQLATKTGTSINNITKALIWGNHSSTQYPDLH----NTLVDGKPALSLV 209          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.664e-55
Identity = 117/219 (53.42%), Postives = 148/219 (67.58%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPL+  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DD
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDD 215          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.664e-55
Identity = 117/219 (53.42%), Postives = 148/219 (67.58%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPL+  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DD
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDD 215          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.664e-55
Identity = 117/219 (53.42%), Postives = 148/219 (67.58%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPL+  V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q+S K   +V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DD
Sbjct:    1 MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDD 215          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_AKKM8 (Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.664e-55
Identity = 111/214 (51.87%), Postives = 143/214 (66.82%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            K P+ V VTGAAGQI Y+L+  IA G MLG DQP+ L +L+IPPA  AL GV MEL DAAFPL+  +V T+D  EA  G N  ++VG  PRK GMERKD++  N  ++  Q  A+ + AA + +VLVV NP NTNALI    A  +P+     +TRLD NRA  Q++EK  V V++V N+ IWGNHSS+QYPD  +A +    G KPV E++KD
Sbjct:    2 KTPITVTVTGAAGQIAYSLLFRIASGSMLGPDQPINLRLLEIPPAMNALEGVVMELRDAAFPLVNEIVPTSDPDEAFAGANWCLLVGSVPRKAGMERKDLLDINGKVFIGQGQAIARSAAKDVRVLVVGNPCNTNALIAMHNASGVPSDRFFAMTRLDENRAKSQLAEKAGVHVTEVTNMAIWGNHSSTQYPDFTNARI----GGKPVTEVIKD 211          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.479e-55
Identity = 112/214 (52.34%), Postives = 143/214 (66.82%), Query Frame = 3
Query:   84 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            K PVRV VTGAAGQI Y+L+  IA G MLG DQPVIL ML+I PA EAL GV MEL D AFPL+ G+V + D   A    + A++VG  PR  GMERKD++  N +I+  Q  A+  HA+ + KVLVV NPANTNALI +  AP I  +  T + RLDHNR L Q++ KL+V + D+  + IWGNHS++QYPD+ H  V    G+  V ++ KD
Sbjct:    2 KAPVRVAVTGAAGQISYSLLFRIAAGEMLGKDQPVILQMLEITPALEALKGVAMELDDCAFPLLAGMVCSDDPNVAFKDADYALLVGARPRGPGMERKDLLEANAAIFSVQGKAINDHASRDIKVLVVGNPANTNALIAQRNAPDINPRQFTAMMRLDHNRGLSQLAAKLDVTLEDITKMTIWGNHSATQYPDLFHTLVK---GDVAVEQVEKD 212          
The following BLAST results are available for this feature:
BLAST of CF835869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
MDH_TERTT5.368e-5655.28Malate dehydrogenase OS=Teredinibacter turnerae (s... [more]
MDH_STRGG5.368e-5651.61Malate dehydrogenase OS=Streptomyces griseus subsp... [more]
MDH_STRAW5.368e-5652.07Malate dehydrogenase OS=Streptomyces avermitilis G... [more]
MDH_HALHL5.368e-5651.16Malate dehydrogenase OS=Halorhodospira halophila (... [more]
MDH_CELJU9.156e-5652.83Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]
MDH_BORPE2.664e-5553.42Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]
MDH_BORPA2.664e-5553.42Malate dehydrogenase OS=Bordetella parapertussis G... [more]
MDH_BORBR2.664e-5553.42Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]
MDH_AKKM82.664e-5551.87Malate dehydrogenase OS=Akkermansia muciniphila (s... [more]
MDH_SACD23.479e-5552.34Malate dehydrogenase OS=Saccharophagus degradans (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835869 ID=CF835869; Name=CF835869; organism=Citrus sinensis; type=EST; length=730bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
GCCTGTCCGTGAGCTTGTCAAGGATGATGC
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