CF835869

Overview
NameCF835869
Unique NameCF835869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_RALME (Malate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=mdh PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.751e-55
Identity = 110/216 (50.93%), Postives = 146/216 (67.59%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            MAK P+RV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++  N  I+  Q  AL++ A+ + KVLVV NPANTNA I  + AP++  +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +ATV+     K V++++ D
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRDVKVLVVGNPANTNAYIAMKSAPNLKRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKMFVWGNHSPTMYADYRYATVD----GKSVKDMIND 212          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.751e-55
Identity = 115/219 (52.51%), Postives = 148/219 (67.58%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            M+K  +RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV MEL D AFPL++ V A +D   A    ++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +PAKN T + RLDHNRAL Q++ K    V+D++ +++WGNHS + YPD   ATV    G + + +L+ DD
Sbjct:    1 MSKPAMRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELDDCAFPLLQEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGKALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDHNRALSQLAAKSGKAVADIEKLVVWGNHSPTMYPDYRFATV----GGQSLAKLINDD 215          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_COXBU (Malate dehydrogenase OS=Coxiella burnetii GN=mdh PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.012e-54
Identity = 113/216 (52.31%), Postives = 144/216 (66.67%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            MAK  V+V VTGAAGQIGYAL+  +A G   G D  V LH+L+I PA  AL GV MEL D AFPL++ +V T+D   A   VN A++VG  PRK GMERKD++ KN SI+  Q  A+ ++AA + ++ VV NP NTN LI    AP IP      +TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++     KP  E+++D
Sbjct:    1 MAKH-VKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID----GKPATEVIRD 211          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_COXBR (Malate dehydrogenase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=mdh PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.012e-54
Identity = 113/216 (52.31%), Postives = 144/216 (66.67%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            MAK  V+V VTGAAGQIGYAL+  +A G   G D  V LH+L+I PA  AL GV MEL D AFPL++ +V T+D   A   VN A++VG  PRK GMERKD++ KN SI+  Q  A+ ++AA + ++ VV NP NTN LI    AP IP      +TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++     KP  E+++D
Sbjct:    1 MAKH-VKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID----GKPATEVIRD 211          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_COXB2 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuG_Q212) GN=mdh PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.012e-54
Identity = 113/216 (52.31%), Postives = 144/216 (66.67%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            MAK  V+V VTGAAGQIGYAL+  +A G   G D  V LH+L+I PA  AL GV MEL D AFPL++ +V T+D   A   VN A++VG  PRK GMERKD++ KN SI+  Q  A+ ++AA + ++ VV NP NTN LI    AP IP      +TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++     KP  E+++D
Sbjct:    1 MAKH-VKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID----GKPATEVIRD 211          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_COXB1 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuK_Q154) GN=mdh PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.012e-54
Identity = 113/216 (52.31%), Postives = 144/216 (66.67%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            MAK  V+V VTGAAGQIGYAL+  +A G   G D  V LH+L+I PA  AL GV MEL D AFPL++ +V T+D   A   VN A++VG  PRK GMERKD++ KN SI+  Q  A+ ++AA + ++ VV NP NTN LI    AP IP      +TRLD NRA+GQ++ K  V V  VKN+IIWGNHSS+QYPD  HAT++     KP  E+++D
Sbjct:    1 MAKH-VKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTRLDQNRAIGQLALKAGVDVPSVKNMIIWGNHSSTQYPDFYHATID----GKPATEVIRD 211          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_RALSO (Malate dehydrogenase OS=Ralstonia solanacearum GN=mdh PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.255e-54
Identity = 112/218 (51.38%), Postives = 147/218 (67.43%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            MAK P+RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV ME+ D AFPL+ G+ A  D + A   V++A++VG  PR  GMERKD++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +AT++     + V++++ D
Sbjct:    1 MAKAPMRVAVTGAAGQIGYALLFRIAAGEMLGKDQPVILQLLEIPDEKAQKALKGVMMEIEDCAFPLLAGMEAHADPMTAFKDVDVALLVGARPRGPGMERKDLLSANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYATID----GQSVKDMIND 214          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_BURP8 (Malate dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mdh PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.255e-54
Identity = 111/217 (51.15%), Postives = 144/217 (66.36%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            MAK   RV VTGAAGQIGY+L+  IA G MLG DQPVIL +LD+P A  A+ GV MEL D AFPL+ GVV T D   A    ++A++VG  PR +GMERKD++S N  I+  Q  AL + A+ + KVLVV NPANTNA I  + AP +P KN T + RLDHNRAL Q++ K    VS ++ +++WGNHS + YPD   AT    A  + + +L+ D+
Sbjct:    1 MAKPAKRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVVTDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVSSIEKLVVWGNHSPTMYPDFRVAT----AEGQDLTKLINDE 213          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.945e-54
Identity = 112/219 (51.14%), Postives = 148/219 (67.58%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDD 728
            MAK P+RV VTGAAGQIGY+L+  IA G +LG DQPVIL +L+I    A +AL GV ME+ D AFPL+ GV A +D + A    ++A++VG  PR  GMERKD++  N  I+  Q  AL+  A+ N KVLVV NPANTNA I  + AP++PAKN T + RLDHNRAL QI+ K++  V+ ++ + +WGNHS + YPD   AT    A  K V+E + D+
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIADEKAQKALKGVIMEIDDCAFPLLAGVTAHSDPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASRNVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQIAAKISKPVTSIEKLTVWGNHSPTMYPDYRFAT----ADGKSVKEAINDE 215          
BLAST of CF835869 vs. ExPASy Swiss-Prot
Match: MDH_RALPJ (Malate dehydrogenase OS=Ralstonia pickettii (strain 12J) GN=mdh PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.847e-54
Identity = 112/218 (51.38%), Postives = 147/218 (67.43%), Query Frame = 3
Query:   78 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLIKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD 725
            MAK P+RV VTGAAGQIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV ME+ D AFPL+ G+ A +D + A   V++A++VG  PR  GMER D++S N  I+ AQ  AL   A+ N KVLVV NPANTNA I  + AP +P +N T + RLDHNRAL QI+ K    VS ++ + +WGNHS + Y D  +AT++     K V++++ D
Sbjct:    1 MAKAPMRVAVTGAAGQIGYALLFRIAAGEMLGKDQPVILQLLEIPDEKAQKALKGVMMEIEDCAFPLLAGMQAHSDPMTAFKDVDVALLVGARPRGPGMERADLLSANAQIFTAQGRALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRENFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYATID----GKSVKDMIND 214          
The following BLAST results are available for this feature:
BLAST of CF835869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
MDH_RALME7.751e-5550.93Malate dehydrogenase OS=Ralstonia metallidurans (s... [more]
MDH_BORPD7.751e-5552.51Malate dehydrogenase OS=Bordetella petrii (strain ... [more]
MDH_COXBU1.012e-5452.31Malate dehydrogenase OS=Coxiella burnetii GN=mdh P... [more]
MDH_COXBR1.012e-5452.31Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXB21.012e-5452.31Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_COXB11.012e-5452.31Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_RALSO2.255e-5451.38Malate dehydrogenase OS=Ralstonia solanacearum GN=... [more]
MDH_BURP82.255e-5451.15Malate dehydrogenase OS=Burkholderia phymatum (str... [more]
MDH_JANMA2.945e-5451.14Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_RALPJ3.847e-5451.38Malate dehydrogenase OS=Ralstonia pickettii (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835869 ID=CF835869; Name=CF835869; organism=Citrus sinensis; type=EST; length=730bp
CTCCATCGAACCTCTCCTTCTCTCGCTTTACTGGAAAAATCTTTTCGTTT
CCTGTGATACATCTCTGATCCGAATTAATGGCCAAGGAACCAGTTCGCGT
TCTTGTCACCGGCGCCGCAGGGCAAATTGGATATGCACTTGTCCCCATGA
TTGCTAGGGGAGTGATGTTGGGTACTGACCAGCCTGTGATTCTGCACATG
CTTGATATACCACCTGCAGCAGAGGCATTGAATGGTGTGAAGATGGAGTT
GGTTGATGCTGCATTCCCTCTTATTAAAGGTGTTGTTGCTACAACTGATG
CTGTTGAGGCATGCACTGGGGTCAATATTGCCGTTATGGTTGGTGGCTTT
CCAAGAAAAGAAGGAATGGAGAGAAAAGATGTGATGTCAAAGAACGTTTC
AATCTACAAGGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACT
GCAAGGTTCTAGTTGTCGCTAACCCTGCAAACACCAATGCATTGATTCTG
AAAGAATTTGCGCCATCAATCCCTGCTAAGAACATTACATGCTTGACCAG
ATTGGATCATAACAGGGCATTGGGACAAATATCTGAGAAACTGAATGTCC
AAGTATCTGATGTTAAGAATGTGATTATTTGGGGAAATCATTCATCATCT
CAGTACCCTGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAA
GCCTGTCCGTGAGCTTGTCAAGGATGATGC
back to top