CF835908

Overview
NameCF835908
Unique NameCF835908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_XYLFA (Malate dehydrogenase OS=Xylella fastidiosa GN=mdh PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.845e-17
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDW+ G+  G W++ G   DGSY +P G+I+ FPVT+ NGE+ I + L ID FS+  +D T  EL EE+A
Sbjct:  232 IIEVRGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURPS (Malate dehydrogenase OS=Burkholderia pseudomallei GN=mdh PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.845e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PV   NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURP6 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=mdh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.845e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PV   NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURP1 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=mdh PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.845e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PV   NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURP0 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=mdh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.845e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PV   NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURMS (Malate dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.845e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PV   NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURMA (Malate dehydrogenase OS=Burkholderia mallei GN=mdh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.845e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PV   NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURM9 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=mdh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.845e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PV   NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_BURM7 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=mdh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.845e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDWV GT  G WV+ G   DGSY +P  +IY  PV   NGE+   +GL ID FSR+K+D T  EL EE+
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_STRMK (Malate dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=mdh PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R  S A  AA+ A DH+RDWV G+  G WV+ G   DGSY +P GVI+ F VT+ NG++ + + L ID+FS+K +D T  EL EE+A
Sbjct:  232 IIEARGSSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFAVTTENGKYTLVKDLPIDDFSQKYIDKTLAELEEERA 321          
The following BLAST results are available for this feature:
BLAST of CF835908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
MDH_XYLFA1.845e-1749.45Malate dehydrogenase OS=Xylella fastidiosa GN=mdh ... [more]
MDH_BURPS1.845e-1752.22Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP61.845e-1752.22Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP11.845e-1752.22Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP01.845e-1752.22Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURMS1.845e-1752.22Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURMA1.845e-1752.22Malate dehydrogenase OS=Burkholderia mallei GN=mdh... [more]
MDH_BURM91.845e-1752.22Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURM71.845e-1752.22Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_STRMK2.410e-1749.45Malate dehydrogenase OS=Stenotrophomonas maltophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835908 ID=CF835908; Name=CF835908; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTCCTTAAACAAAAAAAAAATTGTTATTGATAGTT
TGATACATAAATCACAAGGGGCCTTTAATATCCATTTATCCAGGAAAAGT
AACAAAACTCCAAAATCCCGATTTTCAAATGCAAAAATAACAACATAAAA
TGGAAAGGCTTCTCCCTCATCAAGGGGTCCCCCAGGTTTCAACAAGGGTT
TTATTCAAAACTGGAACTATACCAACTACTCAAACAAAGCTAAGGGCCTT
GGTAACCCACTATTGAAGGGAAAAAAGCTTTTAAAAAAAACATGAGTATG
GGAGGGCCTTCTCCTCGGAAAGCTCCTCTGGTGTCAAGTCCAACTTCTTC
CTTGAAAATTCATCAATGGTGAGTCCTTGAAAAATTGGCCATTCACCGTT
GCGGGAGGTTACTGGGAATGAATAAATGACCCCACCTGGGACATTGTATG
AACCATCAAAGTATCCCCCCTTGGAAACCCAGGGGCCCTCAGGAGTTCCA
AAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGAGC
CCTCGAGAGCTTTCTGGGTTTGATGATTG
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