CF835908

Overview
NameCF835908
Unique NameCF835908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_POLNA (Malate dehydrogenase OS=Polaromonas naphthalenivorans (strain CJ2) GN=mdh PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.322e-15
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R  S A  AA+ A DH+RDW  GT  G WV+ G    G Y +P   ++ FPVT  NGE+ I +GL ID FS++++++T  EL  EKA
Sbjct:  233 IIEARGSSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSGGEYGIPAETMFGFPVTCENGEYKIVEGLEIDAFSQERINITLAELEGEKA 322          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_RALSO (Malate dehydrogenase OS=Ralstonia solanacearum GN=mdh PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.727e-15
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDWV G+  G  V+ G   +G Y +P  V++ FPVT+ NG++ + +G  +D +SR+K+++T +EL EE+A
Sbjct:  233 IIEARGLSSAASAANAAIDHVRDWVLGS-NGKIVTMGIPSNGDYEIPQDVMFGFPVTTANGKYEVVKGFEVDAYSREKINITLKELEEERA 322          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_CUPTR (Malate dehydrogenase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=mdh PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.727e-15
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+RDWV G+  G  V+ G   +G Y +P   ++ +PVT+ NG++ I +GL ID +S++K+++T +EL EEKA
Sbjct:  231 IIEARGLSSAASAANAAIDHVRDWVLGS-NGKVVTMGIPSNGEYGIPADTMFGYPVTTANGKYEIVKGLEIDAYSQEKINITLKELEEEKA 320          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_ACIAC (Malate dehydrogenase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDW  G+  G WV+ G    G Y +P G+++ FPV + NGE+ I +GL ID FS+++++ T  EL  E+
Sbjct:  233 IIEARGLSSAASAANAAIDHMRDWALGS-NGKWVTMGVPSKGEYGIPEGIVFGFPVITENGEYKIVEGLEIDAFSQERINKTLAELQGEQ 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_RALME (Malate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=mdh PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+ DWV G+  G  V+ G   +G Y +P  V++ +PVT+ NG++ I +GL ID +S++K+++T +EL EE+A
Sbjct:  231 IIEARGLSSAASAANAAIDHVHDWVLGS-NGKVVTMGIPSNGEYGIPNDVMFGYPVTTANGKYEIVKGLEIDAYSQEKINITLKELEEERA 320          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_RALEJ (Malate dehydrogenase OS=Ralstonia eutropha (strain JMP134) GN=mdh PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II+ R LS A  AA+ A DH+ DWV GT  G  V+ G   +G Y +P   ++ +PVT  NG++ I +GL ID +S++K+++T  EL EEKA
Sbjct:  231 IIEARGLSSAASAANAAIDHVHDWVLGT-NGKVVTMGIPSNGEYGIPADTMFGYPVTCANGKYEIVKGLEIDAYSQEKINITLNELEEEKA 320          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_METPP (Malate dehydrogenase OS=Methylibium petroleiphilum (strain PM1) GN=mdh PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.571e-15
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R LS A  AA+ A DH+RDW  GT  G WV+ G   +G Y +P  V++ FPVT  NGE+ I  GL ID FS++ ++ T  EL  E+
Sbjct:  233 IIEARGLSSAASAANAAIDHMRDWALGT-NGAWVTMGVPSNGEYGIPKDVMFGFPVTCANGEYKIVDGLAIDAFSQECINKTLAELQGEQ 321          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_MYCVP (Malate dehydrogenase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.119e-14
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R  S A  AA+ A DHI DWV GTP+G W S      G+Y V  G++ SFP  S  G W I +GL I+ FSR ++D +  EL  E+
Sbjct:  234 IIEARGASSAASAANGAIDHIDDWVHGTPDGDWTSVALPSPGAYGVDEGLVCSFPCRSVGGRWEIVEGLDINPFSRARIDASVAELRTER 323          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH_COREF (Malate dehydrogenase OS=Corynebacterium efficiens GN=mdh PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.119e-14
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  308 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEK 577
            II+ R  S A  AAS A DH+RDW+ GT    W S      G+Y +P G+I   P  SRNGEW + +GL I++F R ++D   EEL  E+
Sbjct:  229 IIEVRGKSSAASAASSAVDHMRDWIQGTET--WASAAIPSTGAYGIPEGIILGLPTVSRNGEWEVVEGLEINDFQRARIDANVEELQGER 316          
BLAST of CF835908 vs. ExPASy Swiss-Prot
Match: MDH1_RHOFD (Malate dehydrogenase 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = -3
Query:  305 IIKPRKLSRALFAASFACDHIRDWVFGTPEGPWVSKGGYFDGSYNVPGGVIYSFPVTSRNGEWPIFQGLTIDEFSRKKLDLTPEELSEEKA 577
            II  R +S A  AA+ A DH+RDW  GT  G WV+ G   DG Y +P   ++ FPVT   GE+ + Q L ID FS++ ++ T +EL +E+A
Sbjct:  233 IIAARGVSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSDGQYGIPKETMFGFPVTCEGGEYKVVQNLPIDAFSQECINKTLKELQDEQA 322          
The following BLAST results are available for this feature:
BLAST of CF835908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
MDH_POLNA1.322e-1546.15Malate dehydrogenase OS=Polaromonas naphthalenivor... [more]
MDH_RALSO1.727e-1543.96Malate dehydrogenase OS=Ralstonia solanacearum GN=... [more]
MDH_CUPTR1.727e-1545.05Malate dehydrogenase OS=Cupriavidus taiwanensis (s... [more]
MDH_ACIAC2.256e-1544.44Malate dehydrogenase OS=Acidovorax avenae subsp. c... [more]
MDH_RALME5.025e-1543.96Malate dehydrogenase OS=Ralstonia metallidurans (s... [more]
MDH_RALEJ5.025e-1545.05Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_METPP8.571e-1546.67Malate dehydrogenase OS=Methylibium petroleiphilum... [more]
MDH_MYCVP1.119e-1445.56Malate dehydrogenase OS=Mycobacterium vanbaalenii ... [more]
MDH_COREF1.119e-1444.44Malate dehydrogenase OS=Corynebacterium efficiens ... [more]
MDH1_RHOFD2.494e-1443.96Malate dehydrogenase 1 OS=Rhodoferax ferrireducens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02B16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835908 ID=CF835908; Name=CF835908; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTCCTTAAACAAAAAAAAAATTGTTATTGATAGTT
TGATACATAAATCACAAGGGGCCTTTAATATCCATTTATCCAGGAAAAGT
AACAAAACTCCAAAATCCCGATTTTCAAATGCAAAAATAACAACATAAAA
TGGAAAGGCTTCTCCCTCATCAAGGGGTCCCCCAGGTTTCAACAAGGGTT
TTATTCAAAACTGGAACTATACCAACTACTCAAACAAAGCTAAGGGCCTT
GGTAACCCACTATTGAAGGGAAAAAAGCTTTTAAAAAAAACATGAGTATG
GGAGGGCCTTCTCCTCGGAAAGCTCCTCTGGTGTCAAGTCCAACTTCTTC
CTTGAAAATTCATCAATGGTGAGTCCTTGAAAAATTGGCCATTCACCGTT
GCGGGAGGTTACTGGGAATGAATAAATGACCCCACCTGGGACATTGTATG
AACCATCAAAGTATCCCCCCTTGGAAACCCAGGGGCCCTCAGGAGTTCCA
AAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGAGC
CCTCGAGAGCTTTCTGGGTTTGATGATTG
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