CF835933

Overview
NameCF835933
Unique NameCF835933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA3_MAIZE (Catalase isozyme 3 OS=Zea mays GN=CAT3 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 9.453e-61
Identity = 109/174 (62.64%), Postives = 134/174 (77.01%), Query Frame = -3
Query:  210 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTCH-AERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNVRPSI 728
            E LAF PG+VVPGIYYS+DKMLQCR+FAY DTQR+RLGPNYLMLPV AP+C H NNHYDG MNFMHRDEEVDY+PSR+ P    A   P+P   + GRREKA I K N+FKQPGERYRSW  DRQ+RF+ R+  +L  P+V+ E+ SIW+    + D SLG K+A+ LN++ ++
Sbjct:  323 EQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPRCAHHNNHYDGAMNFMHRDEEVDYYPSRHAPLRQAAPPTPLPPRPVAGRREKATIRKPNDFKQPGERYRSWDADRQDRFVRRFADSLGHPKVSQELRSIWIDLLAKCDASLGMKIATRLNMKANM 496          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATB_PSESY (Catalase OS=Pseudomonas syringae pv. syringae GN=katB PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21
Identity = 60/165 (36.36%), Postives = 93/165 (56.36%), Query Frame = -3
Query:  237 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTH-EVGSIWVSYWFQADRSLGQKLA 728
            E +A  P  +VPGI  S D++LQ R+F+Y DTQ +RLG   L LPV  PK    N + DG +N  H    V+Y PSR +P    ++       ++G  ++A I +E NFKQ G+ +RS++   +   + R+ ++L D   TH E  +I +S  ++ DR  G ++A
Sbjct:  330 EQVAMAPANLVPGIEPSEDRLLQGRVFSYADTQMYRLGAIGLSLPVNQPKVAVNNGNQDGALNTGHTTSGVNYEPSRLEPRPADDKARYSELPLSGTTQQAKITREQNFKQAGDLFRSYSAKEKTDLVQRFGESLAD---THTESKNIMLSVLYKEDRHYGTRVA 491          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_DEIRA (Catalase OS=Deinococcus radiodurans GN=katA PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 62/169 (36.69%), Postives = 90/169 (53.25%), Query Frame = -3
Query:  240 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFM-----NFMHRDEEVDYFPSRYD-PTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKL 728
            E  AF  G++V G+ +S+DKMLQ R F+Y DTQR+R+GPNYL LP+ APK     N  DG M      F  +D+ V+Y PS    P     R P  +  + G   +A IE+ N F Q G +YR++A   ++  ++    AL    V   +    + Y+  AD   GQ++
Sbjct:  341 EQAAFGTGVLVDGLDFSDDKMLQGRTFSYSDTQRYRVGPNYLQLPINAPKKHVATNQRDGQMAYRVDTFEGQDQRVNYEPSLLSGPKEAPRRAPEHTPRVEGNLVRAAIERPNPFGQAGMQYRNFADWERDELVSNLSGALAG--VDKRIQDKMLEYFTAADADYGQRV 507          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_LISSE (Catalase OS=Listeria seeligeri GN=kat PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.096e-20
Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = -3
Query:  369 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTCHAE-RYPIPSDVITGR-REKACIEKENNFKQPGERYRSWA 728
            E + FNPG++VPG+  S D++LQ R+F+Y DTQRHR+GPNYL LP+ +PK P  NN  DG M F  +   ++Y P+ YD        Y  P   I G    +   EK NNF    E ++ ++
Sbjct:  310 ESVGFNPGVLVPGMLPSEDRVLQGRLFSYSDTQRHRVGPNYLQLPINSPKTPVDNNQRDGQMPFKQQTSSINYEPNSYDTEPKENPAYIEPEQEIRGDISGRLVAEKPNNFGHAKEVWKRYS 431          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_LISIN (Catalase OS=Listeria innocua GN=kat PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.381e-19
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = -3
Query:  381 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYD------PTCHAERYPIPSDVITGRREKACIEKENNF---KQPGERY 728
            E + FNPG++V G+  S D++LQ R+F+Y DTQRHR+GPNYL LP+ +PK P  NN  DG+M F  +   ++Y P+ Y+      P    +   I  D I+GR      EK NNF   K+  +RY
Sbjct:  310 ESVGFNPGVLVRGMLPSEDRLLQGRLFSYSDTQRHRVGPNYLQLPINSPKAPVANNQRDGYMPFKQQTSSINYEPNSYETEPKENPAFIEQEQEIRGD-ISGR---LIAEKPNNFGHAKEVWDRY 430          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATB_PSEAE (Catalase OS=Pseudomonas aeruginosa GN=katB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.804e-19
Identity = 61/164 (37.20%), Postives = 85/164 (51.83%), Query Frame = -3
Query:  237 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLA 728
            E +A  P  +VPGI  S D++LQ R+FAY DTQ +R+G N L LPV  P+      + DG +N  H    V+Y PSR DP             ++G  ++A I++E NFKQ GE +RS+    Q   +     AL       E   I +SY+++AD   G  LA
Sbjct:  333 EQVAMAPSNLVPGIEPSEDRLLQGRLFAYADTQMYRVGANGLGLPVNRPRSEVNTVNQDGALNAGHSTSGVNYQPSRLDPREEQASARYVRTPLSGTTQQAKIQREQNFKQTGELFRSYGKKDQADLIASLGGALA--ITDDESKYIMLSYFYKADSDYGTGLA 494          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_LISMO (Catalase OS=Listeria monocytogenes GN=kat PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 54/125 (43.20%), Postives = 72/125 (57.60%), Query Frame = -3
Query:  381 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYD------PTCHAERYPIPSDVITGRREKACIEKENNF---KQPGERY 728
            E + FNPG++V G+  S D++LQ R+F+Y DTQRHR+GPNYL LP+ +PK P  NN  DG M F  +   ++Y P+ YD      P        I  D I+GR      EK NNF   K+  +RY
Sbjct:  310 ESVGFNPGVLVRGMLPSEDRLLQGRLFSYSDTQRHRVGPNYLQLPINSPKAPVANNQRDGHMPFKQQTSSINYEPNSYDTEPKENPAFIEPEQEIRGD-ISGR---LIAEKPNNFGHAKEVWDRY 430          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_VIBF1 (Catalase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=katA PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 59/174 (33.91%), Postives = 88/174 (50.57%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPKCPHRNNHYDGFM----NFMHRDEEVDYFPSRYDPTCHAERYPIPSDVITGRREK-ACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AFNP  VVPGI +S DKMLQ R+FAYGD QR+RLG N+  +PV AP+CP  + H DG M    NF      + Y P+          +  P+  + G        E E+ F QPG+ +R    ++Q    +   + L    V  E+    + + ++AD + G+ +   L++
Sbjct:  308 EQSAFNPANVVPGISFSPDKMLQGRLFAYGDAQRYRLGVNHQHIPVNAPRCPVHSYHRDGAMRVDGNF---GSTLGYEPNNEGQWAEQPDFAEPALNLDGAAAHWDHREDEDYFSQPGDLFRLMTAEQQAILFDNTARNL--NGVPKEIQLRHLRHCYKADPAYGEGIGKLLDI 476          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAES (Catalase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=katA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 59/181 (32.60%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSR---YDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  +VPG+ YS DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M F+  ++     Y+P+    Y+     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    V+ +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFTPTNIVPGLDYSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGVENLCPFSR---DGQMRFLDNNQGGGPHYYPNNQGIYESQPEHKKPPFPTDG-DGYEYNYRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--DGVSKDVKVRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CF835933 vs. ExPASy Swiss-Prot
Match: CATA_STAEQ (Catalase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=katA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 59/181 (32.60%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  222 EMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVYAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSR---YDPTCHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVGSIWVSYWFQADRSLGQKLASCLNV 728
            E  AF P  +VPG+ YS DKMLQ R+F+YGD QR+RLG N+  +PV  PK       CP      DG M F+  ++     Y+P+    Y+     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    V+ +V    + + ++AD   G+ +A  L +
Sbjct:  311 EQAAFTPTNIVPGLDYSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGVENLCPFSR---DGQMRFLDNNQGGGPHYYPNNQGIYESQPEHKKPPFPTDG-DGYEYNYRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--DGVSKDVKVRHIRHCYKADPEYGKGVAKALGI 485          
The following BLAST results are available for this feature:
BLAST of CF835933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
CATA3_MAIZE9.453e-6162.64Catalase isozyme 3 OS=Zea mays GN=CAT3 PE=2 SV=2[more]
CATB_PSESY7.322e-2136.36Catalase OS=Pseudomonas syringae pv. syringae GN=k... [more]
CATA_DEIRA2.130e-2036.69Catalase OS=Deinococcus radiodurans GN=katA PE=1 S... [more]
CATA_LISSE8.096e-2041.80Catalase OS=Listeria seeligeri GN=kat PE=3 SV=1[more]
CATA_LISIN1.381e-1942.40Catalase OS=Listeria innocua GN=kat PE=3 SV=1[more]
CATB_PSEAE1.804e-1937.20Catalase OS=Pseudomonas aeruginosa GN=katB PE=3 SV... [more]
CATA_LISMO3.076e-1943.20Catalase OS=Listeria monocytogenes GN=kat PE=3 SV=... [more]
CATA_VIBF11.094e-1633.91Catalase OS=Vibrio fischeri (strain ATCC 700601 / ... [more]
CATA_STAES1.094e-1632.60Catalase OS=Staphylococcus epidermidis (strain ATC... [more]
CATA_STAEQ1.094e-1632.60Catalase OS=Staphylococcus epidermidis (strain ATC... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835933 ID=CF835933; Name=CF835933; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTTTTTTTTTTTCTAAAACAGACTTTTATTAATTGACCCTCAGGA
AAAGAGTCACATAACATGCAAGTTTATTTTCTCTATTACAATATACAACA
GCAAACATAGGATCGAAATTCTTCACATAGCTGCACCCTTGGGGTTCACT
CCTTGCTCACTCTTGGCAAGTCAAAAGCATCCAGTGTTCCAGTTCAAGTG
ACACCTTCAAATGCTTGGCCTCACATTGAGACAAGAAGCTAGCTTCTGAC
CCAAAGATCTGTCGGCCTGAAACCAGTAAGAGACCCATATGCTGCCAACC
TCATGGGTGACACGTGGGTCACATAAAGCCTTAATCCATCGATTAAGGAA
CCTCTCTTGCCTGTCTGGGGCCCAGGATCGGTATCTCTCTCCAGGCTGCT
TGAAGTTGTTTTCCTTCTCAATGCAAGCCTTCTCACGCCTTCCTGTAATT
ACATCAGAAGGAATGGGATATCTCTCAGCATGACAAGTAGGATCATACCT
CGAAGGAAAGTAATCGACCTCCTCATCCCTGTGCATGAAATTCATGAAAC
CATCATAATGATTGTTGCGATGAGGACATTTGGGTGCATAAACTGGAAGC
ATCAAGTAGTTGGGTCCAAGGCGATGCCTCTGGGTATCACCATAGGCAAA
GATTCGACATTGGAGCATCTTATCATTTGAGTAGTAGATCCCAGGAACCA
CGATACCAGGGTTAAATGCAAGCATTTCAT
back to top