CF835934 | Citrus Genome Database

Overview


Name	CF835934
Unique Name	CF835934
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	753

Libraries


Library Name	Type
Washington Navel Orange Shoot Meristem cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CATA2_HORVU (Catalase isozyme 2 OS=Hordeum vulgare GN=CAT2 PE=2 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 3.764e-108
Identity = 178/226 (78.76%), Postives = 197/226 (87.17%), Query Frame = 2

Query:   74 MDPYKLLPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKFHW 751
            MDP K  PS++ +    TTNAG PVWNDN +LTVG RGP+LLEDYHL+EK+AHFARERIPERVVHARGASAKGFFECTHD++ LTCAD  RAPG +TPVIVRFSTVIHERGSPET+RDPRGFAVKFYTREGNWDLLGN+ PVFFIRD IKFPDVIHAFKPNPKSH+QEYWR+ DF SH PESL TF + FDDVGIP DYRHM+GFG  T+T V++ GK HYVKFHW
Sbjct:    1 MDPCKFRPSSSFDTKTTTTNAGQPVWNDNEALTVGPRGPILLEDYHLLEKIAHFARERIPERVVHARGASAKGFFECTHDVTGLTCADFLRAPGARTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLGNNFPVFFIRDGIKFPDVIHAFKPNPKSHVQEYWRVFDFLSHHPESLHTFFFLFDDVGIPTDYRHMDGFGVNTYTFVSRAGKSHYVKFHW 226

[Close]

BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CATA2_ARATH (Catalase-2 OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=3)

HSP 1 Score: 390.963 bits (1003), Expect = 3.764e-108
Identity = 179/226 (79.20%), Postives = 203/226 (89.82%), Query Frame = 2

Query:   74 MDPYKLLPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKFHW 751
            MDPYK  P++++N+PF TTN+GAPVWN+N S+TVG RGP+LLEDYHLVEKLA+F RERIPERVVHARGASAKGFFE THDIS+LTCAD  RAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGN+DL+GN+ PVFFIRD +KFPD++HA KPNPKSHIQE WRILDF SH PESL+ F++ FDD+GIPQDYRHM+G G  T+ L+NK GK HYVKFHW
Sbjct:    1 MDPYKYRPASSYNSPFFTTNSGAPVWNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLNMFTFLFDDIGIPQDYRHMDGSGVNTYMLINKAGKAHYVKFHW 226

[Close]

BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CATA1_GOSHI (Catalase isozyme 1 OS=Gossypium hirsutum GN=CAT1 PE=2 SV=2)

HSP 1 Score: 389.808 bits (1000), Expect = 8.385e-108
Identity = 182/226 (80.53%), Postives = 199/226 (88.05%), Query Frame = 2

Query:   74 MDPYKLLPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKFHW 751
            MDPYK  PS+  N+PF TTN+GAPVWN+N SLTVG RG  LLEDYHLVEKLA+F RERIPERVVHARGASAKGFFE THDISHLTCAD  RAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGN+DL+GN+ PVFFIRD +KFPD++HA KPNPKSHIQE WRILDF SH PESL  F++ FDD+G+PQDYRHMEG G  T+TL+NK GK HYVKFHW
Sbjct:    1 MDPYKHRPSSAFNSPFWTTNSGAPVWNNNSSLTVGPRGQYLLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFTFLFDDLGVPQDYRHMEGSGVNTYTLINKAGKAHYVKFHW 226

[Close]

BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CATA2_GOSHI (Catalase isozyme 2 OS=Gossypium hirsutum GN=CAT2 PE=2 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 1.095e-107
Identity = 179/226 (79.20%), Postives = 202/226 (89.38%), Query Frame = 2

Query:   74 MDPYKLLPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKFHW 751
            MDPYK  PS++ ++PF TTN+GAPVWN+N SLTVG+RGP+LLEDYHLVEKLA+F RERIPERVVHARGASAKGFFE THDIS LTCAD  RAPGVQTP+IVRFSTVIHERGSPETLRDPRGFAVKFYTREGN+DL+GN+ PVFFIRD +KFPD++HA KPNPKSHIQE WRILDF SH PESL  F++ FDD+G+PQDYRHM+G G  T+TL+NK GK HYVKFHW
Sbjct:    1 MDPYKFRPSSSFDSPFWTTNSGAPVWNNNSSLTVGARGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISQLTCADFLRAPGVQTPLIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFTFLFDDIGVPQDYRHMDGSGVHTYTLINKAGKSHYVKFHW 226

[Close]

BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CATA1_WHEAT (Catalase-1 OS=Triticum aestivum GN=CAT1 PE=2 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 1.095e-107
Identity = 176/226 (77.88%), Postives = 201/226 (88.94%), Query Frame = 2

Query:   74 MDPYKLLPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKFHW 751
            MDPYK  PS++ NAP  +TN+GAPVWN+++SLTVGSRGP+LLEDYHLVEK+A F RERIPERVVHARGA+AKGFFE THD+SHLTCAD  RAPGVQTPVIVRFSTVIHERGSPETLRDPRGFA+KFYTREGNWDL+GN+ PVFFIRD +KFPD++HA KPNPK+HIQE WRILDF SH PESL  F++ FDD+G+P DYRHM+G G  T+TLVN+ GK HYVKFHW
Sbjct:    1 MDPYKYRPSSSFNAPMWSTNSGAPVWNNDNSLTVGSRGPILLEDYHLVEKIADFDRERIPERVVHARGATAKGFFEVTHDVSHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTREGNWDLVGNNFPVFFIRDGMKFPDMVHALKPNPKTHIQENWRILDFFSHHPESLHMFTFLFDDIGVPADYRHMDGSGVNTYTLVNRAGKAHYVKFHW 226

[Close]

BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CATA_SOLAP (Catalase OS=Soldanella alpina PE=2 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.430e-107
Identity = 180/226 (79.65%), Postives = 199/226 (88.05%), Query Frame = 2

Query:   74 MDPYKLLPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKFHW 751
            MDPYK   S+  N PF TTN+GAPVWN+N SLTVG+RGP+LLEDYHLVEKLA+F RERIPERVVHARGASAKGFFE THDISHLTCAD  RAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGN+DL+GN+ PVFF+RD +KFPD++HA KPNPKSHIQE WRILDF SH PESL  F++ FDD+G+PQDYRHMEG G  T+TL+NK GK  YVKFHW
Sbjct:    1 MDPYKYRSSSAFNTPFWTTNSGAPVWNNNSSLTVGTRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFTFLFDDLGVPQDYRHMEGSGVNTYTLINKAGKAQYVKFHW 226

[Close]

BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CATA1_ORYSJ (Catalase isozyme A OS=Oryza sativa subsp. japonica GN=CATA PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.440e-107
Identity = 175/226 (77.43%), Postives = 196/226 (86.73%), Query Frame = 2

Query:   74 MDPYKLLPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKFHW 751
            MDP K  PS++ +    TTNAGAPVWNDN +LTVG RGP+LLEDYHL+EK+AHFARERIPERVVHARGASAKGFFECTHD++ +TCAD  R+PG QTPVIVRFSTVIHERGSPET+RDPRGFAVKFYTREGNWDLLGN+ PVFFIRD IKFPDVIHAFKPNP+SH+QEYWR+ DF SH PESL TF + FDDVGIP DYRHM+GFG  T+T V ++ K  YVKFHW
Sbjct:    1 MDPCKFRPSSSFDTKTTTTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLGNNFPVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFLFDDVGIPTDYRHMDGFGVNTYTFVTRDAKARYVKFHW 226

[Close]

BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CATA1_ORYSI (Catalase isozyme A OS=Oryza sativa subsp. indica PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.440e-107
Identity = 175/226 (77.43%), Postives = 196/226 (86.73%), Query Frame = 2

Query:   74 MDPYKLLPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKFHW 751
            MDP K  PS++ +    TTNAGAPVWNDN +LTVG RGP+LLEDYHL+EK+AHFARERIPERVVHARGASAKGFFECTHD++ +TCAD  R+PG QTPVIVRFSTVIHERGSPET+RDPRGFAVKFYTREGNWDLLGN+ PVFFIRD IKFPDVIHAFKPNP+SH+QEYWR+ DF SH PESL TF + FDDVGIP DYRHM+GFG  T+T V ++ K  YVKFHW
Sbjct:    1 MDPCKFRPSSSFDTKTTTTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLGNNFPVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFLFDDVGIPTDYRHMDGFGVNTYTFVTRDAKARYVKFHW 226

[Close]

BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CATA1_ARATH (Catalase-1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=3)

HSP 1 Score: 385.571 bits (989), Expect = 1.581e-106
Identity = 177/226 (78.32%), Postives = 200/226 (88.50%), Query Frame = 2

Query:   74 MDPYKLLPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKFHW 751
            MDPY++ PS+ H++PF TTN+GAPVWN+N SLTVG+RGP+LLEDYHL+EKLA+F RERIPERVVHARGASAKGFFE THDI+ LT AD  R PGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGN+DL+GN+ PVFF+RD +KFPD++HA KPNPKSHIQE WRILDF SH PESL  FS+ FDD+GIPQDYRHMEG G  T+ L+NK GK HYVKFHW
Sbjct:    1 MDPYRVRPSSAHDSPFFTTNSGAPVWNNNSSLTVGTRGPILLEDYHLLEKLANFDRERIPERVVHARGASAKGFFEVTHDITQLTSADFLRGPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDLGIPQDYRHMEGAGVNTYMLINKAGKAHYVKFHW 226

[Close]

BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CATA_PEA (Catalase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.697e-106
Identity = 178/226 (78.76%), Postives = 198/226 (87.61%), Query Frame = 2

Query:   74 MDPYKLLPSTTHNAPFMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSHLPESLSTFSWFFDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKFHW 751
            MDPYK  PS+  N+PF TTN+GAPVWN+N SLTVGSRGP+LLEDYHLVEKLA F RERIPERVVHARGASAKGFFE THDISHLTCAD  RAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGN+DL+GN+ PVFF+ D + FPD++HA KPNP++HIQE WRILDF  + PESL  FS+ FDDVG+PQDYRHM+GFG  T+TL+NK GK  YVKFHW
Sbjct:    1 MDPYKHRPSSAFNSPFWTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLAQFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNYDLVGNNFPVFFVHDGMNFPDMVHALKPNPQTHIQENWRILDFFYNFPESLHMFSFLFDDVGVPQDYRHMDGFGVNTYTLINKAGKSVYVKFHW 226

The following BLAST results are available for this feature:

BLAST of CF835934 vs. ExPASy Swiss-Prot

BLAST of CF835934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142


Match Name	E-value	Identity	Description
CATA2_HORVU	3.764e-108	78.76	Catalase isozyme 2 OS=Hordeum vulgare GN=CAT2 PE=2...	[more]
CATA2_ARATH	3.764e-108	79.20	Catalase-2 OS=Arabidopsis thaliana GN=CAT2 PE=1 SV...	[more]
CATA1_GOSHI	8.385e-108	80.53	Catalase isozyme 1 OS=Gossypium hirsutum GN=CAT1 P...	[more]
CATA2_GOSHI	1.095e-107	79.20	Catalase isozyme 2 OS=Gossypium hirsutum GN=CAT2 P...	[more]
CATA1_WHEAT	1.095e-107	77.88	Catalase-1 OS=Triticum aestivum GN=CAT1 PE=2 SV=1	[more]
CATA_SOLAP	1.430e-107	79.65	Catalase OS=Soldanella alpina PE=2 SV=1	[more]
CATA1_ORYSJ	2.440e-107	77.43	Catalase isozyme A OS=Oryza sativa subsp. japonica...	[more]
CATA1_ORYSI	2.440e-107	77.43	Catalase isozyme A OS=Oryza sativa subsp. indica P...	[more]
CATA1_ARATH	1.581e-106	78.32	Catalase-1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV...	[more]
CATA_PEA	2.697e-106	78.76	Catalase OS=Pisum sativum PE=2 SV=1	[more]

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Properties


Property Name	Value
Genbank description	UCRCS03_02C09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF835934 ID=CF835934; Name=CF835934; organism=Citrus sinensis; type=EST; length=753bp
CTCGACTCAACTCCTCTTCTCCTTTCTTACGATAATAATAACAGTAGCAA
AATCTTCAGCAAGAAATATCGCCATGGATCCCTACAAATTGCTTCCGTCA
ACTACTCACAATGCCCCCTTTATGACTACAAATGCCGGCGCTCCTGTCTG
GAACGACAATCACTCCTTGACTGTTGGAAGTAGAGGTCCTGTCCTTCTTG
AGGATTATCATCTGGTGGAGAAACTAGCTCATTTTGCCAGGGAGAGGATT
CCAGAACGTGTCGTCCATGCTAGGGGAGCCAGTGCTAAGGGTTTCTTTGA
GTGCACCCATGATATTTCTCACCTTACTTGTGCTGATCTTTTTCGAGCTC
CAGGGGTTCAGACACCTGTCATTGTTCGCTTCTCCACTGTTATCCATGAG
CGGGGCAGCCCTGAGACACTCAGGGATCCTCGAGGATTTGCAGTCAAGTT
TTACACCAGAGAGGGTAATTGGGATCTTCTGGGTAACAGTATCCCTGTTT
TTTTCATCCGTGATGCAATCAAATTCCCAGATGTGATCCATGCTTTTAAA
CCTAATCCAAAGTCTCACATCCAAGAGTACTGGAGGATCCTCGACTTCTG
CTCCCACCTTCCTGAAAGCTTGTCCACATTTTCCTGGTTCTTTGATGATG
TGGGTATTCCACAAGATTACAGGCACATGGAAGGCTTCGGTGATCAAACT
TTTACACTGGTCAATAAGAATGGGAAAGTGCACTATGTGAAATTCCACTG
GAA