CF835934

Overview
NameCF835934
Unique NameCF835934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CAT1_PENJA (Catalase OS=Penicillium janthinellum PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.907e-35
Identity = 89/202 (44.06%), Postives = 114/202 (56.44%), Query Frame = 2
Query:  164 SLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDV--IHAFKPNPKSHI----QEYWRILDFCSHLPESLSTFSWFFDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKFHW 751
            +L   SRG  LL+D    E +  F RER+PER VHARG  A G F    D S+LT A    A G  TP + RFSTV   RGS +T RD  GFA +FY  EGN+D++GN+IPVFFI D I  P +  +HA KPNP+ H+    Q+  RI D  +   +SL+  S    + G P+ Y + E    ++F LV  NGK      HW
Sbjct:   30 TLGAASRGATLLQDLLFTEIIFAFDRERVPERAVHARGTGAHGTFLSYEDWSNLTAASFLSAEGKFTPEMTRFSTVSGARGSADTARDVHGFATRFYVDEGNFDIVGNNIPVFFIWDVIIEPTLMALHAQKPNPRFHLPRGQQDPNRISDNLTARGDSLAQGSQISSERGSPKAYSNTEPNKHRSFRLVTDNGKQFQCSNHW 231          
BLAST of CF835934 vs. ExPASy Swiss-Prot
Match: CATA_PENJA (Catalase OS=Penicillium janthinellum PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 68/215 (31.63%), Postives = 101/215 (46.98%), Query Frame = 2
Query:  119 FMTTNAGAPVWNDNHSLTVGSRGPVLLEDYHLVEKLAHFARERIPERVVHARGASAKGFFECTHDISHLTCADLFRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLLGNSIPVFFIRDAIKFPDVIHAFKPNPKSHIQEYWRILDFCSH-----LPESLSTFSWF-FDDVGIPQDYRHMEGFGDQTFTLVNKNGKVHYVKF 745
            F+     A V +++ SLT G  G +LL+D    +++  F R    ER  HA  A+A G F    D +  + A  F+A G Q   +  FSTV   +GS  T+RD   FA KF +     +L+GN+ P+ F    + F  ++ A K    +    +    +  +      LP SL   S+F          +RHM G+G  TF LV K+G V+  KF
Sbjct:   13 FLAIMVAAAVESES-SLTDGDAGALLLQDISEWDEVFRFDRLEAVERAAHAAAAAAFGAFVARGDWT-ASAAAAFQAAGKQIAFMAAFSTVAGAKGSA-TVRDADAFAAKFASAAALQELVGNNSPISFFIFDLLFAAILFASKAKAANQAA-FAAAAELAAESLFVRLP-SLHQVSFFALAGFAAVAAHRHMNGYGSHTFKLVAKDGSVYCSKF 222          
The following BLAST results are available for this feature:
BLAST of CF835934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
CAT1_PENJA1.907e-3544.06Catalase OS=Penicillium janthinellum PE=1 SV=1[more]
CATA_PENJA4.135e-1431.63Catalase OS=Penicillium janthinellum PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835934 ID=CF835934; Name=CF835934; organism=Citrus sinensis; type=EST; length=753bp
CTCGACTCAACTCCTCTTCTCCTTTCTTACGATAATAATAACAGTAGCAA
AATCTTCAGCAAGAAATATCGCCATGGATCCCTACAAATTGCTTCCGTCA
ACTACTCACAATGCCCCCTTTATGACTACAAATGCCGGCGCTCCTGTCTG
GAACGACAATCACTCCTTGACTGTTGGAAGTAGAGGTCCTGTCCTTCTTG
AGGATTATCATCTGGTGGAGAAACTAGCTCATTTTGCCAGGGAGAGGATT
CCAGAACGTGTCGTCCATGCTAGGGGAGCCAGTGCTAAGGGTTTCTTTGA
GTGCACCCATGATATTTCTCACCTTACTTGTGCTGATCTTTTTCGAGCTC
CAGGGGTTCAGACACCTGTCATTGTTCGCTTCTCCACTGTTATCCATGAG
CGGGGCAGCCCTGAGACACTCAGGGATCCTCGAGGATTTGCAGTCAAGTT
TTACACCAGAGAGGGTAATTGGGATCTTCTGGGTAACAGTATCCCTGTTT
TTTTCATCCGTGATGCAATCAAATTCCCAGATGTGATCCATGCTTTTAAA
CCTAATCCAAAGTCTCACATCCAAGAGTACTGGAGGATCCTCGACTTCTG
CTCCCACCTTCCTGAAAGCTTGTCCACATTTTCCTGGTTCTTTGATGATG
TGGGTATTCCACAAGATTACAGGCACATGGAAGGCTTCGGTGATCAAACT
TTTACACTGGTCAATAAGAATGGGAAAGTGCACTATGTGAAATTCCACTG
GAA
back to top