CF835935

Overview
NameCF835935
Unique NameCF835935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_SHESA (Anthranilate phosphoribosyltransferase OS=Shewanella sp. (strain ANA-3) GN=trpD PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 65/186 (34.95%), Postives = 103/186 (55.38%), Query Frame = -2
Query:  215 FMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKV-NTLAEGVALAREIQLSGKALNTLDLWIEVS 769
            F+ +  YH  +K   PVR+ LK +T+FN+LGP++NPA   F ++GVY+  LV  +A  LQ  G +RA+VVH  GLDE++  G   + ++   +I  +   P D+G+P+  +  L+GG PA NA++ + +L G+                L  C + +++  G ALA     SGKA   L+   +VS
Sbjct:  157 FLFAPHYHGGVKHAVPVRQALKTRTLFNVLGPLINPARPEFMLLGVYSPELVTPIARVLQALGTQRAMVVHGSGLDEVALHGSTQVAELKDGEIIEYQLTPADFGVPQAQISELEGGEPAQNAQITQSILQGQGSDAHTHAVAINAGCALYLCGLSDSVKAGTALALNTIKSGKAFELLNQLAKVS 342          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_PROMH (Anthranilate phosphoribosyltransferase OS=Proteus mirabilis (strain HI4320) GN=trpD PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 54/138 (39.13%), Postives = 88/138 (63.77%), Query Frame = -2
Query:  371 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE 784
            E G+ F+ +  YH   +F  PVR++L+ +T+FN+LGP++NPA  P A++GVY+  L++ +A+ L   G KRA VVHS G+DE+S   P  + ++   +I R+   P D+G+  C +  L+GG P  N ++L  +L G+
Sbjct:  143 EIGLCFLFAPLYHSGFRFAAPVRQQLRTRTLFNVLGPLINPARPPLALIGVYSPELLMPIADTLNVLGYKRAAVVHSGGMDEVSLHAPTQVAELHNGEITRYQLTPSDFGLRPCAISDLEGGTPEVNRQLLANLLQGQ 280          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_RHOPT (Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.947e-27
Identity = 74/191 (38.74%), Postives = 102/191 (53.40%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            EAGIGFM +  +HPAMK V P R +L  +T+FN+LGP+ NPA V   ++GV++   V  +A  L+  G +   VVH S+GLDE++  G   + ++   +I  F   P D G+PR   ++L+GG    NA  LR VL G  G              +V+ K   L EGVAL  +   SG A   L   I VS
Sbjct:  145 EAGIGFMFAPTHHPAMKNVGPTRVELATRTIFNLLGPLSNPAGVKRQMIGVFSRQWVQPLAQVLKNLGSEAVWVVHGSDGLDEITLSGTTAVAELKNGEITSFEISPEDAGLPRAPADALKGGDAQANAVALRAVLEGMPGPYRDVALLNAAATLVVAGKARDLKEGVALGTQSIDSGAAEARLKKLIAVS 335          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_RHOPA (Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris GN=trpD PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.947e-27
Identity = 74/191 (38.74%), Postives = 102/191 (53.40%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            EAGIGFM +  +HPAMK V P R +L  +T+FN+LGP+ NPA V   ++GV++   V  +A  L+  G +   VVH S+GLDE++  G   + ++   +I  F   P D G+PR   ++L+GG    NA  LR VL G  G              +V+ K   L EGVAL  +   SG A   L   I VS
Sbjct:  145 EAGIGFMFAPTHHPAMKNVGPTRVELATRTIFNLLGPLSNPAGVKRQMIGVFSRQWVQPLAQVLKNLGSEAVWVVHGSDGLDEITLSGTTAVAELKNGEITSFEISPEDAGLPRAPADALKGGDAQANAVALRAVLEGMPGPYRDVALLNAAATLVVAGKARDLKEGVALGTQSIDSGAAEARLKKLIAVS 335          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_BACC4 (Anthranilate phosphoribosyltransferase OS=Bacillus cereus (strain B4264) GN=trpD PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.947e-27
Identity = 69/193 (35.75%), Postives = 102/193 (52.85%), Query Frame = -2
Query:  203 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEG-LDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHLL 778
            GI F+ +   HPA++ +  +RK+L V T+FN++GP+ NP  +    VG+Y  +++L +A  LQ+ G K+ALVV+  G LDE S  G   ++ +   +I   S DP  YG  R   E ++GG    NA++   VLSGE+                 + K  T+ EG+ LA     SGKAL  L+L I  S   L
Sbjct:  145 GIAFLFAPVMHPALRRIMKIRKELNVPTIFNLIGPLTNPVNLETQFVGIYKRDMLLPVAEVLQKLGRKQALVVNGSGFLDEASLQGENHVVLLKDNEIVEMSIDPEKYGFSRVKNEEIRGGNSKENAKITLEVLSGEKSVYRDTVLLNAGLALFANGKTETIEEGIKLAAHSIDSGKALTKLNLLIAASNEKL 337          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_ALKMQ (Anthranilate phosphoribosyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=trpD PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.947e-27
Identity = 68/196 (34.69%), Postives = 106/196 (54.08%), Query Frame = -2
Query:  200 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHLLV 784
            +  +GFM + K+H AMK+    R++L V+T+FNILGP+ NPA V   V+GV++E+L   MA  L+  G++R +VVH  +GLDE++      + ++    I  +  DP  + IP    E L GG    NA ++  ++ GE G               V    N+L EG+  A E+   G AL+ L+  I++S+ L V
Sbjct:  144 QVNMGFMFAPKFHQAMKYAAAARRELGVRTIFNILGPLTNPAKVKGQVLGVFDESLTEVMAQVLKELGVERGMVVHGLDGLDEITTTTKTKVSELKNGMISNYVIDPRQFDIPLTDKEDLAGGDAEKNASIILNIVKGETGGKRNMVLINAGAAIYVGNAANSLQEGIDRAAEVIDMGLALDKLNQLIKLSQELKV 339          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_OCHA4 (Anthranilate phosphoribosyltransferase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=trpD PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-26
Identity = 69/190 (36.32%), Postives = 102/190 (53.68%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            EAG+GFM +  +H AM+ V P R +L  +T+FN+LGP+ NPA V   +VGV+    ++ +A  L+  G + A VV+ +GLDEM+  G   +  +   +I  F   P + G+ RC    L+GG  A NA+ L  VL GE+               +++     L EG+ALA +   SG AL+ L   I VS
Sbjct:  145 EAGLGFMFAPMHHSAMRHVGPSRVELGTRTIFNLLGPLSNPASVKRQLVGVFAPQWLVPLAEVLKELGSEAAWVVYGDGLDEMTTAGTTQVAALENGRIRTFEITPEEVGLRRCDPAELKGGEAAVNAKALLGVLEGEKNAYRDIVLLNSGAALVIAGNAKDLKEGIALAAQSIDSGAALDVLQKVIAVS 334          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_NITEU (Anthranilate phosphoribosyltransferase OS=Nitrosomonas europaea GN=trpD PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-26
Identity = 70/194 (36.08%), Postives = 103/194 (53.09%), Query Frame = -2
Query:  206 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 784
            E GIGFM +  +H AMK   PVR++L V+TVFNILGP+ NPA     ++GVY+ +L   +A  L R G + A++VH S+GLDE++  GP  I ++   ++  +S  P D+G+ R  L SLQ         +L  VL    G               V+ K ++ A GV  AR++  SG A   +   +E S  +
Sbjct:  146 EVGIGFMFAPNFHHAMKHAAPVRRELGVRTVFNILGPLTNPAGASNQLLGVYHADLTGVLAQVLLRLGSRHAMIVHGSDGLDEITLSGPTKIAELNAGEVREYSVQPEDFGLERAALTSLQVNSTEDAQAMLLSVLDNHPGPARDIVLLNAGAAIYVAGKADSWARGVETARDMLASGAAKQKMQALVEFSNQV 339          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_METEP (Anthranilate phosphoribosyltransferase OS=Methylobacterium extorquens (strain PA1) GN=trpD PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-26
Identity = 72/191 (37.70%), Postives = 100/191 (52.36%), Query Frame = -2
Query:  215 EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 784
            EAG+ FM +  +H AM+ V PVR +L  +T+FN+LGP+ NPA V   V GV        +   L   G +R   VH S+GLDE++  GP  ++ +       F+ DP + G+P  TL+ L+GG P +NA  L  VL G R               +V+    +LAEGVA A+E   SG A  TL   + VS
Sbjct:  145 EAGLCFMFAQTHHGAMRHVAPVRTELPFRTIFNMLGPLSNPAGVTAQVFGVSRPAWAEPLTRVLATLGSRRVWTVHGSDGLDEITTTGPTAVVALENGAFRHFTLDPREVGLPLATLDDLRGGDPEHNAAALGAVLEGTRNAYRDIAVLNAGAGLVVAGAAGSLAEGVARAQEAIDSGAARGTLARLVAVS 335          
BLAST of CF835935 vs. ExPASy Swiss-Prot
Match: TRPD_BACC2 (Anthranilate phosphoribosyltransferase OS=Bacillus cereus (strain G9842) GN=trpD PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-26
Identity = 68/193 (35.23%), Postives = 103/193 (53.37%), Query Frame = -2
Query:  203 GIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEG-LDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHLL 778
            GI F+ +   HPA++ +  +RK+L V T+FN++GP+ NP  +    VG+Y  +++L +A  LQ+ G K+ALVV+  G LDE S  G   ++ +   +I   + DP +YG  R   E ++GG    NA++   VLSGE+                 + K  T+ EG+ LA     SGKAL  L+L I  S   L
Sbjct:  145 GIAFLFAPAMHPALRRIMKIRKELNVPTIFNLIGPLTNPVNLETQFVGIYKRDMLLPVAQVLQKLGRKQALVVNGSGFLDEASLQGENQVVLLKDNEIVEMNIDPENYGFSRVKNEEIRGGNSQENAKITVGVLSGEKSVYRDTVLLNAGLALFANGKTETIEEGIKLATHSIDSGKALTKLNLLIAASNEKL 337          
The following BLAST results are available for this feature:
BLAST of CF835935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_SHESA4.553e-2734.95Anthranilate phosphoribosyltransferase OS=Shewanel... [more]
TRPD_PROMH4.553e-2739.13Anthranilate phosphoribosyltransferase OS=Proteus ... [more]
TRPD_RHOPT5.947e-2738.74Anthranilate phosphoribosyltransferase OS=Rhodopse... [more]
TRPD_RHOPA5.947e-2738.74Anthranilate phosphoribosyltransferase OS=Rhodopse... [more]
TRPD_BACC45.947e-2735.75Anthranilate phosphoribosyltransferase OS=Bacillus... [more]
TRPD_ALKMQ5.947e-2734.69Anthranilate phosphoribosyltransferase OS=Alkaliph... [more]
TRPD_OCHA41.014e-2636.32Anthranilate phosphoribosyltransferase OS=Ochrobac... [more]
TRPD_NITEU1.014e-2636.08Anthranilate phosphoribosyltransferase OS=Nitrosom... [more]
TRPD_METEP1.014e-2637.70Anthranilate phosphoribosyltransferase OS=Methylob... [more]
TRPD_BACC21.014e-2635.23Anthranilate phosphoribosyltransferase OS=Bacillus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835935 ID=CF835935; Name=CF835935; organism=Citrus sinensis; type=EST; length=785bp
GTATTCAACATAACATAATACATTCCTTAAGCCAATACTTTTGATATACT
ACAATAAACAATATTAATTTTAGGGACCTTCTAATTTCTTCTAATAGTTG
ATCGACAAGACGTGCATAAGCAAGCCAACTTTTGACCTACCTGTTATTCA
TGGTACTGCAATGAAGTCTTTCTTAGGCTTCAAAACTCCATTACTCATGC
ACAAGCAAATGCTTTGAGACTTCTATCCATAAATCCAGTGTATTAAGAGC
TTTCCCTGATAATTGAATTTCACGTGCCAGGGCTACACCCTCAGCCAAGG
TGTTCACTTTGCAACTGACCAACAGCGCTGCTGCAGCATTTAGGATTAAT
GCATCAGCTATTGCCCCTCTTTCTCCAGACAGTACACGCCTTAAGACCTC
TGCATTATATGCTGGGCCTCCACCTTGCAAGCTTTCTAAAGTGCAGCGCG
GAATGCCGTAGTCCAATGGATCAAATGAGAATCTCTCAATTTTTTCTTGG
GTGACATCAAGGATCAGACCAGGTCCAAGGGGACTCATCTCATCCAAACC
CTCTGAGTGAACAACCAATGCTCTTTTCAGGCCAAATCGTTGCAATGCAT
TGGCCATTTTGAGTACCAAGTTTTCATTGTAAACACCAACCACAGCGAAT
GGCACACATGCAGGATTCAACATAGGACCCAATATATTGAATACAGTTTT
TACTTTGAGCTTTTTCCTCACTGGCCTGACAAACTTCATTGCAGGGTGAT
ACTTTGTCGACATCATGAAACCAATTCCTGCCTCA
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