CF835936

Overview
NameCF835936
Unique NameCF835936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_HERA2 (Anthranilate phosphoribosyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=trpD PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.406e-37
Identity = 86/221 (38.91%), Postives = 127/221 (57.47%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFS-FDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSC-KVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            S C  ADVLE LGV I+LD EGV RC+ +AGIGFM + K+HPAM++  PVR+++ ++T+FN+LGP+ NPA   + V+GV N  L  K+ANAL + G++RALVVH S+GLDE+S     L+ DV      + S   P D+G+     E++ GG    N  + + +L G                  V+C + ++  E +  A++   +G A   +   IE S
Sbjct:  116 SKCGSADVLEGLGVNIELDAEGVARCLRQAGIGFMFAPKFHPAMRYAGPVRREIGIRTIFNVLGPLTNPARAEYQVIGVANAGLAEKLANALSKMGIRRALVVHGSDGLDEISISASTLVFDVRAGATPQASTISPSDFGLSLAPREAIAGGSVEENVAMTKAILEGSDTGPRRDIVLLNAAAALVACERADSFGEALRQAQQAIDTGSANQRMQRMIEAS 336          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_NATPD (Anthranilate phosphoribosyltransferase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=trpD PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.516e-37
Identity = 84/208 (40.38%), Postives = 122/208 (58.65%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-RGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKA 623
            S+   ADVLE +GV ID +P  V  C++E G+GFM++  +HPAMK V   RK+L ++T+FN+LGP+ NPA     VVGVY+E LV  +A+AL R  + RALVVH  GLDE+   G   + +V  E +E+++  P D G+    L ++ GG P  NA  +R +L G+  G               ++ + ++LA GV  ARE   +G A
Sbjct:  114 SSSGSADVLEEIGVTIDAEPPAVETCIEETGMGFMLAPVFHPAMKAVIGPRKELGMRTIFNVLGPLTNPADADAQVVGVYDEALVPTLADALSRMSVDRALVVHGAGLDEIGVHGESTVAEVDGESVEQYTVTPSDLGVDSHDLSAVAGGSPTENAADMRGILEGDVEGAKRDIILANAGAAIYIAGEADSLAAGVDAARESIDTGAA 321          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_RHISN (Anthranilate phosphoribosyltransferase OS=Rhizobium sp. (strain NGR234) GN=trpD PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.817e-37
Identity = 83/213 (38.97%), Postives = 119/213 (55.87%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            AD L  LGV +D+ PE + RC+ EAG+GFM + ++H AM+ V P R +L  +T+FN+LGP+ NPA V   +VGV+    V  +A  L+  G +   VVH EGLDE++  G   + ++   KI  F   P  +G+ R TL++L+GG  A+NA  L+ VL GE                 ++ +   LAEG+A+ RE   SG A   L   I VS
Sbjct:  122 ADALSCLGVKLDIGPEAIARCIREAGVGFMFAQQHHSAMRHVGPTRVELGTRTIFNLLGPLSNPAGVKRQLVGVFAPQWVDPLAEVLRDLGSESIWVVHGEGLDEITTTGVTKVAELKDGKIRSFELTPESFGLARTTLDALKGGDGAHNAAALQAVLDGEENAYRDISLANAAASLMIAGRATDLAEGMAIGREALSSGAAKAALQRLITVS 334          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_NITWN (Anthranilate phosphoribosyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=trpD PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.282e-36
Identity = 92/214 (42.99%), Postives = 120/214 (56.07%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            AD L ALG+ IDL PE V RC++EAGIGFM +  +HPAMK V P R +L  +T+FN+LGP+ NPA V   +VGV++   V  +A  L+  G + A VVH S+GLDE++  GP  +  +    I  F   P D G+ R   ++L+GG    NA  LR VL G+ G               V+ K  TL EGVAL  +    G ALN L   I VS
Sbjct:  122 ADCLAALGIRIDLTPEQVGRCINEAGIGFMFAPAHHPAMKNVGPTRVELATRTIFNLLGPLSNPAGVRRQMVGVFSRQWVQPLAQVLKNHGSESAWVVHGSDGLDEITLAGPTFVAALEDGNIRTFEVTPEDAGLERADGDALKGGDAEANAASLRAVLEGKPGAFRDVALLNAAAALIVAGKAKTLKEGVALGAKSLDGGGALNKLKQLIAVS 335          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_BRASB (Anthranilate phosphoribosyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=trpD PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.674e-36
Identity = 92/214 (42.99%), Postives = 119/214 (55.61%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            ADVL ALGV IDL P+ V RCV EAGIGFM +  +HPAMK V P R +L  +T+FN+LGP+ NPA V   +VGV++   V  +A  L+  G K A VVH S+GLDE++  GP  +  +   +I  F   P   G+  C  + L+GG  A NA  L+ VL G                  V+ +  TLAEGVA+ R+   SG A   L   I VS
Sbjct:  122 ADVLAALGVKIDLKPDQVGRCVQEAGIGFMFAPAHHPAMKNVGPTRVELATRTIFNLLGPLSNPAGVKHQMVGVFSRQWVEPLAQVLKNLGSKAAWVVHGSDGLDEITLTGPTFVAALEHGQIRTFEVTPEQAGLGLCGSDGLKGGDAAANAVALQSVLDGMPSPYRDVALLNAAAALVVAGRAKTLAEGVAIGRDALDSGAAAARLKHLIAVS 335          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_RHOP2 (Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris (strain HaA2) GN=trpD PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.187e-36
Identity = 91/214 (42.52%), Postives = 119/214 (55.61%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            ADVL ALGV ID+ P+ V RCV EAGIGFM +  +HPAMK V P R +L  +T+FN+LGP+ NPA V   ++GV++   V  +A  LQ  G +   VVH S+GLDE++  GP  + ++   +I  F   P D G+PR   ++L+GG    NA  LR VL G  G               V+ K   L EGVAL  +   SG A   L   I VS
Sbjct:  122 ADVLNALGVKIDITPDHVGRCVAEAGIGFMFAPTHHPAMKNVGPTRVELATRTIFNLLGPLSNPAGVKRQMIGVFSRQWVQPLAQVLQNLGSESIWVVHGSDGLDEITLSGPTAVAELKNGEIRTFEIGPEDAGLPRAPADALKGGDAEANAVALRAVLEGMPGPYRDVALLNAAATLIVAGKAKDLKEGVALGAQSIDSGAAEARLKKLIAVS 335          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_METMJ (Anthranilate phosphoribosyltransferase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=trpD PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.187e-36
Identity = 81/218 (37.16%), Postives = 126/218 (57.80%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            S C  ADVLEALGV + + P+ V   +  AGI F+ +  YHPAM++ R  R+++ ++TVFN+LGP+ NPA     ++GVY+  L L +A  L   G +RA+VVH  GLDE++  GP  + ++   ++  ++ D  ++G+PR ++ +L+GGGP  NA  L  VL+GE G               +  K + +A G+A A     SG AL+ L   +E +
Sbjct:  117 SRCGSADVLEALGVSVAIPPDRVGEVLAAAGIAFLFAPAYHPAMQYARIARQEIGIRTVFNLLGPLTNPAGAGAHLLGVYDPCLTLPVARVLGDLGAERAMVVHGAGLDEIATAGPTTVAELRGGEVTTYTLDCTEFGVPRSSVAALRGGGPEENAATLLAVLAGEEGPARDIVLLNAGAAIYLGGKADGIAGGIAHAEASLDSGAALDRLRRLVEAT 334          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_THEPX (Anthranilate phosphoribosyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=trpD PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.856e-36
Identity = 83/217 (38.25%), Postives = 125/217 (57.60%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 665
            ADVL  LG  I++ PE  +R ++E G+GF+ + KYH AMK V  +RK+L  +TVFN+LGP+ NPA V   V+GVY++ L   +A  L R G ++A+VVH  +GLDE++   P  + +V + K+  +  DP DYGIP   LE L+G     NA+++  +L GE+G               +   V  L EG+ +A  +  +G AL+ L   +E  + L
Sbjct:  121 ADVLMELGFDIEMVPEKTKRLIEEKGMGFLFAPKYHVAMKNVAGIRKELGTRTVFNVLGPLTNPAFVKGQVLGVYDKELTHPLAEVLLRLGTEKAMVVHGFDGLDEITTTSPTFVSEVKEGKVIDYVIDPEDYGIPYAKLEDLEGKDAKENAQIILNILKGEKGPKRDIVVLNAAAALYIGKVVEDLKEGIKVANYLIDTGLALDKLTEILEYQRRL 337          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_THEP3 (Anthranilate phosphoribosyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpD PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.856e-36
Identity = 83/217 (38.25%), Postives = 125/217 (57.60%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKHL 665
            ADVL  LG  I++ PE  +R ++E G+GF+ + KYH AMK V  +RK+L  +TVFN+LGP+ NPA V   V+GVY++ L   +A  L R G ++A+VVH  +GLDE++   P  + +V + K+  +  DP DYGIP   LE L+G     NA+++  +L GE+G               +   V  L EG+ +A  +  +G AL+ L   +E  + L
Sbjct:  121 ADVLMELGFDIEMVPEKTKRLIEEKGMGFLFAPKYHVAMKNVAGIRKELGTRTVFNVLGPLTNPAFVKGQVLGVYDKELTHPLAEVLLRLGTEKAMVVHGFDGLDEITTTSPTFVSEVKEGKVIDYVIDPEDYGIPYAKLEDLEGKDAKENAQIILNILKGEKGPKRDIVVLNAAAALYIGKVVEDLKEGIKVANYLIDTGLALDKLTEILEYQRRL 337          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_PSEHT (Anthranilate phosphoribosyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=trpD PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.730e-36
Identity = 78/214 (36.45%), Postives = 121/214 (56.54%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG-XXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            AD+L+ALG+ I++ P     C+++ G  F+ + +YHP ++    VR  LK +T+FNILGP++NPA     ++GVYN NL L MA  L+  G KRA++VH  G DE++  GP  ++++    I  ++ +P D+ +   +LE L G GP YNA V   +L G+                  +S K  +L +G      +  SG+A+NTL+  IEVS
Sbjct:  140 ADLLKALGINIEMTPAQAANCLEQTGFTFLFAPQYHPGVRHAMGVRTALKTRTIFNILGPLVNPAAPEVQLLGVYNPNLCLPMAQTLRTLGTKRAMIVHGSGTDEIALHGPTTVVELNNGNISEYTLNPSDFDLANYSLEQLTGEGPQYNANVSLAILQGKGDEAHNAAIIVNVAALLYLSGKAQSLKDGAHKVHTLLSSGQAMNTLNAIIEVS 353          
The following BLAST results are available for this feature:
BLAST of CF835936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_HERA24.406e-3738.91Anthranilate phosphoribosyltransferase OS=Herpetos... [more]
TRPD_NATPD7.516e-3740.38Anthranilate phosphoribosyltransferase OS=Natronom... [more]
TRPD_RHISN9.817e-3738.97Anthranilate phosphoribosyltransferase OS=Rhizobiu... [more]
TRPD_NITWN1.282e-3642.99Anthranilate phosphoribosyltransferase OS=Nitrobac... [more]
TRPD_BRASB1.674e-3642.99Anthranilate phosphoribosyltransferase OS=Bradyrhi... [more]
TRPD_RHOP22.187e-3642.52Anthranilate phosphoribosyltransferase OS=Rhodopse... [more]
TRPD_METMJ2.187e-3637.16Anthranilate phosphoribosyltransferase OS=Methanoc... [more]
TRPD_THEPX2.856e-3638.25Anthranilate phosphoribosyltransferase OS=Thermoan... [more]
TRPD_THEP32.856e-3638.25Anthranilate phosphoribosyltransferase OS=Thermoan... [more]
TRPD_PSEHT3.730e-3636.45Anthranilate phosphoribosyltransferase OS=Pseudoal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835936 ID=CF835936; Name=CF835936; organism=Citrus sinensis; type=EST; length=742bp
CTTCTGCATGTCGATGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATT
GACTTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGG
TTTCATGATGTCGACAAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAG
TGAGGAAAAAGCTCAAAGTAAAAACTGTATTCAATATATTGGGTCCTATG
TTGAATCCTGCATGTGTGCCATTCGCTGTGGTTGGTGTTTACAATGAAAA
CTTGGTACTCAAAATGGCCAATGCATTGCAACGATTTGGCCTGAAAAGAG
CATTGGTTGTTCACTCAGAGGGTTTGGATGAGATGAGTCCCCTTGGACCT
GGTCTGATCCTTGATGTCACCCAAGAAAAAATTGAGAGATTCTCATTTGA
TCCATTGGACTACGGCATTCCGCGCTGCACTTTAGAAAGCTTGCAAGGTG
GAGGCCCAGCATATAATGCAGAGGTCTTAAGGCGTGTACTGTCTGGAGAA
AGAGGGGCAATAGCTGATGCATTAATCCTAAATGCTGCAGCAGCGCTGTT
GGTCAGTTGCAAAGTGAACACCTTGGCTGAGGGTGTAGCCCTGGCACGTG
AAATTCAATTATCAGGGAAAGCTCTTAATACACTGGATTTATGGATAGAA
GTCTCAAAGCATTTGCTTGTGCATGAGTAATGGAGTTTTGAAGCCTAAGA
AAGACTTCATTGCAGTACCATGAATAACAGGTAAGTCAAAAG
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