CF835936

Overview
NameCF835936
Unique NameCF835936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_GEOSM (Anthranilate phosphoribosyltransferase OS=Geobacter sp. (strain M21) GN=trpD PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.200e-34
Identity = 80/213 (37.56%), Postives = 121/213 (56.81%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLD 638
            S+C  ADVLEALGV +D+ PE V R + + GIGF+ +   H AMK     R+++ ++T+FNILGP+ NPA     V+GVY E+LV K+A  L++ G +   VVH S+G+DE++  G   + ++T + ++     P  +G+ R  L  L GG    NA ++R +LSG+ G                + K   +AEG+ LA E   SG A+  L+
Sbjct:  130 SSCGSADVLEALGVNLDVTPEVVERSIAQIGIGFLFAPALHGAMKHAIGPRREIGIRTIFNILGPLTNPAGADCQVLGVYREDLVEKLAQVLKKLGCRSGFVVHGSDGMDEITLTGESTVAEITADGVKLSKVTPEQFGLERAPLTELHGGDAQGNAVIVRDILSGKDGAKRRIVLLNAGYALVATGKAKDVAEGIRLAAETIDSGAAMKQLE 342          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_SINMW (Anthranilate phosphoribosyltransferase OS=Sinorhizobium medicae (strain WSM419) GN=trpD PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.567e-34
Identity = 81/213 (38.03%), Postives = 116/213 (54.46%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            AD L  LGV +++ PE + RC+ EAG+GFM + ++H AM+ V P R +L  +T+FN+LGP+ NPA V   +VGVY    V  +A  L+  G +   VVH EGLDE++  G   +  +    I  F   P D+G+ R TL++L+GG  A+NA  L+ VL G                  ++ +   L EG+ LAR+   SG A   L   I VS
Sbjct:  122 ADALSCLGVNLEIGPEAISRCIGEAGLGFMFAQQHHSAMRHVGPTRVELGTRTIFNLLGPLANPAGVRQQLVGVYAPQWVDPLAEVLRDLGSESVWVVHGEGLDEITTTGVTKVAALKDGTITNFELTPADFGLERVTLDALKGGDGAHNAAALQAVLDGAENAYRDISLANAAASLMIAGRAKDLMEGMDLARKSLSSGAAKVALQRLITVS 334          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_BRASO (Anthranilate phosphoribosyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=trpD PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.567e-34
Identity = 88/214 (41.12%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            ADVL ALGV IDL P+ V RC+ EAGIGFM +  +HPAMK V P R +L  +T+FN+LGP+ NPA V   +VGV++   V  +A  L+  G   A VVH S+GLDE++  GP  +  +    I  F   P + G+  C  E L+GG  A NA  L+ VL G                  V+ +  +L EGVA+ ++   SG A   L   I VS
Sbjct:  122 ADVLAALGVKIDLKPDQVGRCIREAGIGFMFAPAHHPAMKNVGPTRVELATRTIFNLLGPLSNPAGVKRQMVGVFSRQWVEPLAQVLKNLGSGAAWVVHGSDGLDEITLTGPTFVAALENGHIRTFEISPEEAGLGLCDSEGLKGGDAAANAVALQSVLDGLPSPYRDVALLNAAAALVVAGRAKSLKEGVAIGKDSLDSGAAAGRLKQLIAVS 335          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_RHOP5 (Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=trpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 88/214 (41.12%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            ADVL ALGV ID+ P+ V RC+ EAGIGFM +  +HPAMK V P R +L  +T+FN+LGP+ NPA V   +VGV++   V  +A  L+  G +   VVH S+GLDE++  GP  +  +   +I  F   P D G+PR   ESL+GG    NA  L+ VL G+                 V+ +   L E VAL  +   SG A   L   I VS
Sbjct:  122 ADVLAALGVKIDITPDQVGRCIAEAGIGFMFAPTHHPAMKNVGPTRVELATRTIFNMLGPLSNPAGVKRQMVGVFSRQWVQPLAQVLKNLGSEAVWVVHGSDGLDEITISGPTFVAALKDGEITTFEITPEDAGLPRAPAESLKGGDAEANAAALKGVLQGKPSPYRDVALLNAGATLIVAGRAGDLKEAVALGAQSIDSGAAAARLAKLIAVS 335          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_METEP (Anthranilate phosphoribosyltransferase OS=Methylobacterium extorquens (strain PA1) GN=trpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 86/214 (40.19%), Postives = 115/214 (53.74%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVS 656
            ADVL ALGV I L PE + RC+ EAG+ FM +  +H AM+ V PVR +L  +T+FN+LGP+ NPA V   V GV        +   L   G +R   VH S+GLDE++  GP  ++ +       F+ DP + G+P  TL+ L+GG P +NA  L  VL G R                V+    +LAEGVA A+E   SG A  TL   + VS
Sbjct:  122 ADVLAALGVKIGLPPEALARCLSEAGLCFMFAQTHHGAMRHVAPVRTELPFRTIFNMLGPLSNPAGVTAQVFGVSRPAWAEPLTRVLATLGSRRVWTVHGSDGLDEITTTGPTAVVALENGAFRHFTLDPREVGLPLATLDDLRGGDPEHNAAALGAVLEGTRNAYRDIAVLNAGAGLVVAGAAGSLAEGVARAQEAIDSGAARGTLARLVAVS 335          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_GEOBB (Anthranilate phosphoribosyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=trpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 78/213 (36.62%), Postives = 121/213 (56.81%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLD 638
            S+C  ADVLEALGV +D+ P+ V R + + GIGF+ +   H AMK     R+++ ++T+FNILGP+ NPA     V+GVY E+LV K+A  L++ G +   VVH  +G+DE++  G   + ++T + ++ +   P  +G+ R  L  L GG    NA ++R +LSG+ G                + K   +AEG+ LA E   SG A+  L+
Sbjct:  130 SSCGSADVLEALGVNLDVTPDVVERSIAQIGIGFLFAPALHGAMKHAIGPRREIGIRTIFNILGPLTNPAGADCQVLGVYREDLVEKLAQVLKKLGCRSGFVVHGCDGMDEITLTGESTVAEITADGVKLYKVTPEQFGLERAPLAELHGGDALGNAVIVRDILSGKDGAKRRIVLLNAGYALVATGKAKDVAEGIRLAAETIDSGAAMKQLE 342          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_DESPS (Anthranilate phosphoribosyltransferase OS=Desulfotalea psychrophila GN=trpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 82/213 (38.50%), Postives = 120/213 (56.34%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEG-LDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGG-GPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTL 635
            S C  ADVLEALGV + LDP  V R V E GIGF+ +   H AMK     R+++ ++T+FNILGP+ NPA     ++GV+  +L   +A  L R G +R+LVV  EG +DEM+  G   I D    ++  ++ +P D G+ R  +  + GG  P  +A+ +R VL+GE+G                + +V T+ EGV +AR++  SG AL  L
Sbjct:  129 SRCGSADVLEALGVDLSLDPATVARSVQEIGIGFLFAPLLHAAMKHAIVPRREMGIRTIFNILGPLTNPAGANVQLIGVFERSLTTVLAEVLLRLGERRSLVVWGEGNMDEMTVTGTSYIADAHDGRVTSYAVEPEDVGLARAAVADISGGRTPEESAQQVRAVLAGEKGARLDMVLLNAGAALLAAGRVETIVEGVVMARDVVESGAALKKL 341          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_DECAR (Anthranilate phosphoribosyltransferase OS=Dechloromonas aromatica (strain RCB) GN=trpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 83/220 (37.73%), Postives = 124/220 (56.36%), Query Frame = 3
Query:    3 SACRCADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEG-LDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 659
            S+   ADVLEALG  I L PE V  C+DE G GFM +  +H AMK V PVR+++ V+T+FNILGP+ NPA  P  ++GV++ +LV  +   +QR G +R LVVH +  LDE+S     ++ ++   +I  +   P DYG+   +L +L+ G  A + E+L  VL  + G               V+   +++ +G+  ARE   SG A   LD +I  +K
Sbjct:  118 SSSGAADVLEALGANIMLSPEQVAACIDETGFGFMFAPNHHTAMKHVAPVRREMGVRTIFNILGPLTNPAGAPNTLMGVFHPDLVGILVRVMQRLGAERVLVVHGKDCLDEISLGAATMVGELNNGEIREYEIHPEDYGLQMQSLRNLRVGSAAESREMLLGVLGNQPGPAREIVCLNAGAALYVANVADSIGDGIVRAREAIASGAARAKLDQFINATK 337          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_CAUCR (Anthranilate phosphoribosyltransferase OS=Caulobacter crescentus GN=trpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 85/202 (42.08%), Postives = 110/202 (54.46%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKA 623
            ADVL ALGV ID   E  R+ +DEAGI F+ +  +H AMK V P+R++L  +T+FN+LGP+ NPA     VVGV     V  +A AL   G +RA  VH  G+DE++  G   + +     +  F   P   G+PR  L  L GG PA+NA  L R+  GE G               V+ KV TL EGVALA E   SG+A
Sbjct:  123 ADVLTALGVNIDATREQQRKALDEAGICFLFAQAHHGAMKHVSPIRQQLGFRTIFNLLGPLTNPAGAKRQVVGVSAPRFVEPIAKALGALGAERAWSVHGSGMDELTTTGETEVAEWRDGVVRLFKITPEAVGLPRAALADLTGGDPAFNAAALTRLFDGETGPYRDIVLLNAAAAFLVADKVETLVEGVALAAEAIDSGRA 324          
BLAST of CF835936 vs. ExPASy Swiss-Prot
Match: TRPD_CAUCN (Anthranilate phosphoribosyltransferase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=trpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.047e-34
Identity = 85/202 (42.08%), Postives = 110/202 (54.46%), Query Frame = 3
Query:   18 ADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGXXXXXXXXXXXXXXXVSCKVNTLAEGVALAREIQLSGKA 623
            ADVL ALGV ID   E  R+ +DEAGI F+ +  +H AMK V P+R++L  +T+FN+LGP+ NPA     VVGV     V  +A AL   G +RA  VH  G+DE++  G   + +     +  F   P   G+PR  L  L GG PA+NA  L R+  GE G               V+ KV TL EGVALA E   SG+A
Sbjct:  123 ADVLTALGVNIDATREQQRKALDEAGICFLFAQAHHGAMKHVSPIRQQLGFRTIFNLLGPLTNPAGAKRQVVGVSAPRFVEPIAKALGALGAERAWSVHGSGMDELTTTGETEVAEWRDGVVRLFKITPEAVGLPRAALADLTGGDPAFNAAALTRLFDGETGPYRDIVLLNAAAAFLVADKVETLVEGVALAAEAIDSGRA 324          
The following BLAST results are available for this feature:
BLAST of CF835936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_GEOSM1.200e-3437.56Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_SINMW1.567e-3438.03Anthranilate phosphoribosyltransferase OS=Sinorhiz... [more]
TRPD_BRASO1.567e-3441.12Anthranilate phosphoribosyltransferase OS=Bradyrhi... [more]
TRPD_RHOP52.047e-3441.12Anthranilate phosphoribosyltransferase OS=Rhodopse... [more]
TRPD_METEP2.047e-3440.19Anthranilate phosphoribosyltransferase OS=Methylob... [more]
TRPD_GEOBB2.047e-3436.62Anthranilate phosphoribosyltransferase OS=Geobacte... [more]
TRPD_DESPS2.047e-3438.50Anthranilate phosphoribosyltransferase OS=Desulfot... [more]
TRPD_DECAR2.047e-3437.73Anthranilate phosphoribosyltransferase OS=Dechloro... [more]
TRPD_CAUCR2.047e-3442.08Anthranilate phosphoribosyltransferase OS=Caulobac... [more]
TRPD_CAUCN2.047e-3442.08Anthranilate phosphoribosyltransferase OS=Caulobac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835936 ID=CF835936; Name=CF835936; organism=Citrus sinensis; type=EST; length=742bp
CTTCTGCATGTCGATGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATT
GACTTGGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGG
TTTCATGATGTCGACAAAGTATCACCCTGCAATGAAGTTTGTCAGGCCAG
TGAGGAAAAAGCTCAAAGTAAAAACTGTATTCAATATATTGGGTCCTATG
TTGAATCCTGCATGTGTGCCATTCGCTGTGGTTGGTGTTTACAATGAAAA
CTTGGTACTCAAAATGGCCAATGCATTGCAACGATTTGGCCTGAAAAGAG
CATTGGTTGTTCACTCAGAGGGTTTGGATGAGATGAGTCCCCTTGGACCT
GGTCTGATCCTTGATGTCACCCAAGAAAAAATTGAGAGATTCTCATTTGA
TCCATTGGACTACGGCATTCCGCGCTGCACTTTAGAAAGCTTGCAAGGTG
GAGGCCCAGCATATAATGCAGAGGTCTTAAGGCGTGTACTGTCTGGAGAA
AGAGGGGCAATAGCTGATGCATTAATCCTAAATGCTGCAGCAGCGCTGTT
GGTCAGTTGCAAAGTGAACACCTTGGCTGAGGGTGTAGCCCTGGCACGTG
AAATTCAATTATCAGGGAAAGCTCTTAATACACTGGATTTATGGATAGAA
GTCTCAAAGCATTTGCTTGTGCATGAGTAATGGAGTTTTGAAGCCTAAGA
AAGACTTCATTGCAGTACCATGAATAACAGGTAAGTCAAAAG
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