CF835953

Overview
NameCF835953
Unique NameCF835953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CSK22_CHICK (Casein kinase II subunit alpha' OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.053e-26
Identity = 66/199 (33.17%), Postives = 110/199 (55.28%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPG------VTSLPDFKSAFPKWPSKELGTVVRN-----LEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            I+ ++Y++L+ + YCHS  ++HRD+KP N++ID +   L+L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+ A M+  + P F G    D+L +I +VLGT   D   G      +   P F     +   K     + +     + P  +DLL K+L  D  +R+TA+ A+EH YF  V
Sbjct:  134 IRFYMYELLKALDYCHSMGIMHRDVKPHNVMIDHQQKKLRLIDWGLAE-FYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGQDNYDQLVRIAKVLGT---DELYGYLKKYHIELDPHFNDILGQHSRKRWENFIHSENRHLVSPEVLDLLDKLLRYDHQQRLTAKEAMEHPYFYPV 328          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: MK08_MOUSE (Mitogen-activated protein kinase 8 OS=Mus musculus GN=Mapk8 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.682e-26
Identity = 81/202 (40.10%), Postives = 110/202 (54.46%), Query Frame = -2
Query:  296 DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTP----NEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPA-----------GIDLLSKMLCMDPSRRITARSALEHEY 856
            D   +   LYQ+L GI + HS  ++HRDLKP N+++ +    LK+ DFGLAR  G      T  VVT +YRAPE++LG   Y   VD+WSVGCI  EMV  + LFPG   ID+  K+   LGTP     +   P V +  + +  +  +  ++L   V  L PA             DLLSKML +D S+RI+   AL+H Y
Sbjct:  124 DHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV-KSDCTLKILDFGLARTAGTSFM-MTPYVVTRYYRAPEVILGMG-YKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDV--LFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPY 320          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: MK08_HUMAN (Mitogen-activated protein kinase 8 OS=Homo sapiens GN=MAPK8 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.682e-26
Identity = 81/202 (40.10%), Postives = 110/202 (54.46%), Query Frame = -2
Query:  296 DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTP----NEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPA-----------GIDLLSKMLCMDPSRRITARSALEHEY 856
            D   +   LYQ+L GI + HS  ++HRDLKP N+++ +    LK+ DFGLAR  G      T  VVT +YRAPE++LG   Y   VD+WSVGCI  EMV  + LFPG   ID+  K+   LGTP     +   P V +  + +  +  +  ++L   V  L PA             DLLSKML +D S+RI+   AL+H Y
Sbjct:  124 DHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV-KSDCTLKILDFGLARTAGTSFM-MTPYVVTRYYRAPEVILGMG-YKENVDLWSVGCIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDV--LFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPY 320          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CSK21_ARATH (Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.682e-26
Identity = 69/198 (34.85%), Postives = 112/198 (56.57%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTW---------PGVTSLPDFKSAFPKWPSKELGTVVRNL-EPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            I+ ++Y++L+ + +CHS  ++HRD+KP N++ID     L+L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+FA M+  + P F G    D+L KI +VLGT   + +         P + +L    S  P W SK +    ++L  P  ID L K+L  D   R+TA+ A+ H YF  V
Sbjct:  128 IRYYIYELLKALDFCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAE-FYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLNKYQLELDPQLEALVGRHSRKP-W-SKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHAYFAQV 322          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CSK22_ARATH (Casein kinase II subunit alpha-2 OS=Arabidopsis thaliana GN=CKA2 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.502e-26
Identity = 68/196 (34.69%), Postives = 109/196 (55.61%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGV------TSLPDFKSAFPKWP-SKELGTVVRNL-EPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            I+ ++Y++L+ + +CHS  ++HRD+KP N++ID     L+L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+FA M+  + P F G    D+L KI +VLGT   + +         T L        + P SK +    R+L  P  ID L K+L  D   R+TA+ A+ H YF  V
Sbjct:  128 IRYYIYELLKALDFCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAE-FYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIAKVLGTDELNAYLNKYQLELDTQLEALVGRHSRKPWSKFINADNRHLVSPEAIDYLDKLLRYDHQDRLTAKEAMAHPYFAQV 322          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: MK08_RAT (Mitogen-activated protein kinase 8 OS=Rattus norvegicus GN=Mapk8 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.574e-26
Identity = 81/202 (40.10%), Postives = 110/202 (54.46%), Query Frame = -2
Query:  296 DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTP----NEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPA-----------GIDLLSKMLCMDPSRRITARSALEHEY 856
            D   +   LYQ+L GI + HS  ++HRDLKP N+++ +    LK+ DFGLAR  G      T  VVT +YRAPE++LG   Y   VD+WSVGCI  EMV  + LFPG   ID+  K+   LGTP     +   P V +  + +  +  +  ++L   V  L PA             DLLSKML +D S+RI+   AL+H Y
Sbjct:  124 DHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV-KSDCTLKILDFGLARTAGTSFM-MTPYVVTRYYRAPEVILGMG-YKENVDLWSVGCIMGEMVCLKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDV--LFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPY 320          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: IME2_YEAST (Meiosis induction protein kinase IME2/SME1 OS=Saccharomyces cerevisiae GN=IME2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.574e-26
Identity = 80/220 (36.36%), Postives = 110/220 (50.00%), Query Frame = -2
Query:  287 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTN----------------ALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTP---------NEDTWPGVTSLPDFKSAFP-----KWPSKELGTVVRNLEPAGI----DLLSKMLCMDPSRRITARSALEHEYFRD 844
            +K+ L QIL G+ + H H   HRDLKP+N+LI   T                  +KLADFGLAR        +T  V T WYR+PEILL S +YS P+D+W+ GC+  E+   R LFPG +EID+++KI  VLGTP         N  T P      D  S        K P  E  ++   L  + +    +++ K L  DP+ R TA+   E  +F +
Sbjct:  170 LKSILSQILAGLKHIHEHNFFHRDLKPENILITPSTQYFEKEYMNQIGYQDNYVIKLADFGLARHVENK-NPYTAYVSTRWYRSPEILLRSGYYSKPLDIWAFGCVAVEVTVFRALFPGANEIDQIWKILEVLGTPIKRSDFVNTNHITAPPPGGFWDDASNLVHKLNLKLPYVEGSSLDHLLSSSQLSDLSEVVKKCLRWDPNERATAQELCEMPFFEN 388          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CSK21_MOUSE (Casein kinase II subunit alpha OS=Mus musculus GN=Csnk2a1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.574e-26
Identity = 66/198 (33.33%), Postives = 107/198 (54.04%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSL-----PDFKSAFPKWPSKELGTVVRN-----LEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            I+ ++Y+IL+ + YCHS  ++HRD+KP N++ID     L+L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+ A M+  + P F G    D+L +I +VLGT  ED +  +        P F     +   K     V +     + P  +D L K+L  D   R+T R A+EH +F  V
Sbjct:  133 IRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT--EDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTVREAMEHPFFYTV 327          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CSK2A_CAEEL (Casein kinase II subunit alpha OS=Caenorhabditis elegans GN=kin-3 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.019e-25
Identity = 64/196 (32.65%), Postives = 107/196 (54.59%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPG---VTSLPDFKSAFPKWPSKELGTVVRN-----LEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            I+ +LY++L+ + +CHS  ++HRD+KP N++ID     L+L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+ A M+  + P F G    D+L +I +VLGT     +     +   P F     +   K     +       + P  +D L K+L  D + R+TA+ A+ HEYFR V
Sbjct:  132 IRYYLYELLKALDFCHSQGIMHRDVKPHNVMIDAEKRELRLIDWGLAE-FYHPRQDYNVRVASRYFKGPELLVDYQCYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTDELYEYIARYHIDLDPRFNDILGRHSRKRWERFIHAENQHLVTPEALDFLDKLLRYDHAERLTAQEAMGHEYFRPV 326          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CSK2A_DROME (Casein kinase II subunit alpha OS=Drosophila melanogaster GN=CkIIalpha PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.872e-25
Identity = 63/193 (32.64%), Postives = 105/193 (54.40%), Query Frame = -2
Query:  293 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSL---PDFKSAFPKWPSKELGTVVRN-----LEPAGIDLLSKMLCMDPSRRITARSALEHEYF 844
            I+ +L+++L+ + YCHS  ++HRD+KP N++ID     L+L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+ A M+  + P F G    D+L +I +VLGT     +    ++   P F     +   K     V +     + P  +D L K+L  D   R+TAR A+ H YF
Sbjct:  131 IRYYLFELLKALDYCHSMGIMHRDVKPHNVMIDHENRKLRLIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEELYAYLDKYNIDLDPRFHDILQRHSRKRWERFVHSDNQHLVSPEALDFLDKLLRYDHVDRLTAREAMAHPYF 322          
The following BLAST results are available for this feature:
BLAST of CF835953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CSK22_CHICK2.053e-2633.17Casein kinase II subunit alpha' OS=Gallus gallus P... [more]
MK08_MOUSE2.682e-2640.10Mitogen-activated protein kinase 8 OS=Mus musculus... [more]
MK08_HUMAN2.682e-2640.10Mitogen-activated protein kinase 8 OS=Homo sapiens... [more]
CSK21_ARATH2.682e-2634.85Casein kinase II subunit alpha-1 OS=Arabidopsis th... [more]
CSK22_ARATH3.502e-2634.69Casein kinase II subunit alpha-2 OS=Arabidopsis th... [more]
MK08_RAT4.574e-2640.10Mitogen-activated protein kinase 8 OS=Rattus norve... [more]
IME2_YEAST4.574e-2636.36Meiosis induction protein kinase IME2/SME1 OS=Sacc... [more]
CSK21_MOUSE4.574e-2633.33Casein kinase II subunit alpha OS=Mus musculus GN=... [more]
CSK2A_CAEEL1.019e-2532.65Casein kinase II subunit alpha OS=Caenorhabditis e... [more]
CSK2A_DROME3.872e-2532.64Casein kinase II subunit alpha OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835953 ID=CF835953; Name=CF835953; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTTTTAATTCAATTTGGTGTATTACATATCAACTATTT
AAAAGAAAAACTGGCACAAACATTTATCCACAAGATCAAGAAAGCCGCGA
ATACACGATTACAAACTAGGCAAATCCAGAGATGACTGTAAAAAGCCATT
CCATGTAGTAAGACTTTTCAGTAAAACTGCAAGTAAAGACAGTCGGCAAA
TTTCGCAAACAATCAAAACCGAAGGCTTCACAATAATGTCAACACTCTAA
TAGCATATACAACAGATATTAGGGTACAAATTCGACGTCCCTGAAGTATT
CATGTTCTAGAGCACTTCTGGCAGTAATTCTTCTGCTTGGATCCATGCAG
AGCATTTTAGAAAGGAGATCAATGCCAGCTGGCTCAAGATTTCGAACAAC
AGTCCCCAACTCCTTAGAAGGCCATTTTGGAAAGGCAGATTTAAAGTCAG
GCAATGAAGTCACTCCAGGCCATGTGTCCTCATTAGGTGTTCCCAAGACT
CTGAAGATCTTGAATAACTCATCAATCTCAGAGTCTCCTGGAAACAATGG
CCGCTGGTTCACCATCTCAGCAAATATACATCCCACCGACCACACATCAA
CTGGAGTAGAGTAATGGCGAGATCCTAGTAATATTTCAGGTGCTCTGTAC
CACAATGTCACCACCTCATGTGTAAATGTCCTAACAGGAATACCAAAAGC
CCTGGCCAGTCCAAAATCTGCTAGCTTTAGTGCATTCGTACGACGATCTA
TTAGCAAATTTTGTGGTTTCAAATCTCGATGAAGAACCCGGTGAGAATGG
CAGTAGGCAATGCCACGTAGAATTTGATAAAGGAATGTTTTTATCAGACG
AGGATCATTAGCAAAATCTGGG
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