CF835953

Overview
NameCF835953
Unique NameCF835953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK2_MOUSE (Cell division protein kinase 2 OS=Mus musculus GN=Cdk2 PE=1 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 2.651e-66
Identity = 127/236 (53.81%), Postives = 161/236 (68.22%), Query Frame = -2
Query:  284 LIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM------------------------------------------------VNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 847
            LIK++L+Q+L+G+A+CHSHRVLHRDLKPQNLLI+    ++KLADFGLARAFG+PVRT+THEVVTLWYRAPEILLG ++YST VD+WS+GCIFAEM                                                V +R LFPGDSEID+LF+IFR LGTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LLS+ML  DP++RI+A++AL H +F+DV
Sbjct:  103 LIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAE-GSIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMHLVCTQHHAKCCGEHRRNGRHSLCPLCSYLEVAASQGGGMTAVSAPHPVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 337          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAFK (Cell division control protein 2 homolog OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CRK2 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.651e-66
Identity = 119/185 (64.32%), Postives = 146/185 (78.92%), Query Frame = -2
Query:  287 KTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 841
            K+FL Q+L GIAYCH  RVLHRDLKPQNLLI+R    LK+ADFGLARAFGIPVR +THEVVTLWYRAP++L+GS+ YST +D+WSVGCIFAEMVN  PLFPG SE D+L +IFR+LGTPN   WP VT LP +   F  +      + ++ L+ +GIDLLSKML +DP++RITA+ ALEH YF++
Sbjct:  103 KSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINRE-GELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE 286          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAF7 (Cell division control protein 2 homolog OS=Plasmodium falciparum (isolate 3D7) GN=CRK2 PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.651e-66
Identity = 119/185 (64.32%), Postives = 146/185 (78.92%), Query Frame = -2
Query:  287 KTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 841
            K+FL Q+L GIAYCH  RVLHRDLKPQNLLI+R    LK+ADFGLARAFGIPVR +THEVVTLWYRAP++L+GS+ YST +D+WSVGCIFAEMVN  PLFPG SE D+L +IFR+LGTPN   WP VT LP +   F  +      + ++ L+ +GIDLLSKML +DP++RITA+ ALEH YF++
Sbjct:  103 KSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINRE-GELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE 286          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC2C_DROME (Cell division control protein 2 cognate OS=Drosophila melanogaster GN=cdc2c PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.462e-66
Identity = 114/193 (59.07%), Postives = 152/193 (78.76%), Query Frame = -2
Query:  275 PRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFV 853
            P+LIK++++QIL  + +CH++R+LHRDLKPQNLL+D     +KLADFGLARAF +P+R +THEVVTLWYRAPEILLG++ YST VD+WS+GCIF+EM+ +R LFPGDSEID+L++IFR L TP+E  WPGVT LPDFK+ FP+W    +   +   E    +L+  MLC DP+ RI+A+ AL+H YFR+V+ V
Sbjct:  104 PQLIKSYMHQILDAVGFCHTNRILHRDLKPQNLLVDT-AGKIKLADFGLARAFNVPMRAYTHEVVTLWYRAPEILLGTKFYSTGVDIWSLGCIFSEMIMRRSLFPGDSEIDQLYRIFRTLSTPDETNWPGVTQLPDFKTKFPRWEGTNMPQPI--TEHEAHELIMSMLCYDPNLRISAKDALQHAYFRNVQHV 293          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CKB22_ARATH (Cyclin-dependent kinase B2-2 OS=Arabidopsis thaliana GN=CDKB2-2 PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 2.244e-65
Identity = 110/187 (58.82%), Postives = 150/187 (80.21%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            +K  +YQ+ +G+A+CH H VLHRDLKP NLL+DR+T  LK+AD GLARAF +P++ +THE++TLWYRAPE+LLG+ HYST VD+WSVGCIFAE+V ++ +F GDSE+ +L +IFR+LGTPNE+ WPGV+ L D+   +P+W    L T V NL+ AG+DLLSKML  +P++RI+A+ A+EH YF D+
Sbjct:  124 VKCLMYQLCKGMAFCHGHGVLHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPMKKYTHEILTLWYRAPEVLLGATHYSTGVDMWSVGCIFAELVTKQAIFAGDSELQQLLRIFRLLGTPNEEVWPGVSKLKDWHE-YPQWKPLSLSTAVPNLDEAGLDLLSKMLEYEPAKRISAKKAMEHPYFDDL 309          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CKB12_ARATH (Cyclin-dependent kinase B1-2 OS=Arabidopsis thaliana GN=CDKB1-2 PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 1.114e-64
Identity = 109/189 (57.67%), Postives = 149/189 (78.84%), Query Frame = -2
Query:  281 LIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 847
            L++ F++Q+ +G+A+CHSH VLHRDLKPQNLL+D+    LK+AD GL+RAF +P++ +THE+VTLWYRAPE+LLGS HYST VD+WSVGCIFAEM+ ++ LFPGDSE  +L  IFR+LGTP E  WPGV +L D+   +PKW  ++L   V +L P GIDLL++ML  +P+ RI+A++AL+H YF  ++
Sbjct:  120 LVQRFMFQLFKGVAHCHSHGVLHRDLKPQNLLLDKDKGILKIADLGLSRAFTVPLKAYTHEIVTLWYRAPEVLLGSTHYSTAVDIWSVGCIFAEMIRRQALFPGDSEFQQLLHIFRLLGTPTEQQWPGVMALRDW-HVYPKWEPQDLSRAVPSLSPEGIDLLTQMLKYNPAERISAKAALDHPYFDSLD 307          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CKB21_ORYSJ (Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp. japonica GN=CDKB2-1 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.527e-64
Identity = 105/187 (56.15%), Postives = 146/187 (78.07%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            +K  +YQ+ +G+A+CH   VLHRDLKP NLL+DR+T ALK+AD GL+R+F +P++ +THE++TLWYRAPE+LLG+ HYSTPVD+WSVGCIFAE+   +PLF GDSE+ +L  IF++LGTPNE  WPGV+ LP++   +P+W   ++  +V  L+   +DLL KML  +PS+RI+A+ A+EH YF DV
Sbjct:  136 VKILMYQLCKGVAFCHGRGVLHRDLKPHNLLMDRKTMALKIADLGLSRSFTVPLKKYTHEILTLWYRAPEVLLGAAHYSTPVDIWSVGCIFAELATNQPLFAGDSEVQQLLHIFKLLGTPNEQVWPGVSKLPNWHE-YPQWNPSKVSDLVHGLDADALDLLEKMLQYEPSKRISAKKAMEHPYFNDV 321          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC2D_ANTMA (Cell division control protein 2 homolog D OS=Antirrhinum majus GN=CDC2D PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.527e-64
Identity = 106/191 (55.50%), Postives = 152/191 (79.58%), Query Frame = -2
Query:  281 PRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 853
            P  +K+ +YQ+ +G+A+CH H VLHRDLKP NLL+DR+T  LK+AD GLARA+ +P++ +THE++TLWYRAPE+LLG+ HYS  VD+WSV CIFAE+V Q+ LFPGDSE+ +L  IFR+LGTPNE+ WPGV++L D+   +P+W ++ + + V  L+  G++LLS+ML  +PSRRI+A+ A+EH YF +++
Sbjct:  119 PMNVKSLMYQLCKGVAFCHGHGVLHRDLKPHNLLMDRKTMMLKIADLGLARAYTLPIKKYTHEILTLWYRAPEVLLGATHYSPAVDMWSVACIFAELVTQKALFPGDSELQQLLHIFRLLGTPNEEIWPGVSTLVDWHE-YPQWTAQPISSAVPGLDEKGLNLLSEMLHYEPSRRISAKKAMEHPYFDELD 308          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CKB11_ARATH (Cyclin-dependent kinase B1-1 OS=Arabidopsis thaliana GN=CDKB1-1 PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 9.428e-64
Identity = 110/192 (57.29%), Postives = 150/192 (78.12%), Query Frame = -2
Query:  281 DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVE 856
            +P LI+  ++Q+ +G+A+CHSH VLHRDLKPQNLL+ +    LK+AD GL RAF +P++++THE+VTLWYRAPE+LLGS HYST VD+WSVGCIFAEMV ++ LFPGDSE  +L  IFR+LGTP E  WPGV++L D+   +PKW  ++L   V +L P G+DLL+KML  +P+ RI+A++AL+H YF  ++
Sbjct:  115 EPFLIQKLMFQLCKGVAHCHSHGVLHRDLKPQNLLLVKDKELLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEQQWPGVSTLRDW-HVYPKWEPQDLTLAVPSLSPQGVDLLTKMLKYNPAERISAKTALDHPYFDSLD 305          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CKB21_ARATH (Cyclin-dependent kinase B2-1 OS=Arabidopsis thaliana GN=CDKB2-1 PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 1.042e-62
Identity = 105/187 (56.15%), Postives = 148/187 (79.14%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            IK+ +YQ+ +G+A+CH H +LHRDLKP NLL+D +T  LK+AD GLARAF +P++ +THE++TLWYRAPE+LLG+ HYST VD+WSVGCIFAE+V  + +F GDSE+ +L  IF++ GTPNE+ WPGV++L ++   +P+W    L + V NL+ AG+DLLSKML  +P++RI+A+ A+EH YF D+
Sbjct:  122 IKSLMYQLCKGMAFCHGHGILHRDLKPHNLLMDPKTMRLKIADLGLARAFTLPMKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELVTNQAIFQGDSELQQLLHIFKLFGTPNEEMWPGVSTLKNWHE-YPQWKPSTLSSAVPNLDEAGVDLLSKMLQYEPAKRISAKMAMEHPYFDDL 307          
The following BLAST results are available for this feature:
BLAST of CF835953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK2_MOUSE2.651e-6653.81Cell division protein kinase 2 OS=Mus musculus GN=... [more]
CDC2H_PLAFK2.651e-6664.32Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2H_PLAF72.651e-6664.32Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2C_DROME3.462e-6659.07Cell division control protein 2 cognate OS=Drosoph... [more]
CKB22_ARATH2.244e-6558.82Cyclin-dependent kinase B2-2 OS=Arabidopsis thalia... [more]
CKB12_ARATH1.114e-6457.67Cyclin-dependent kinase B1-2 OS=Arabidopsis thalia... [more]
CKB21_ORYSJ5.527e-6456.15Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp... [more]
CDC2D_ANTMA5.527e-6455.50Cell division control protein 2 homolog D OS=Antir... [more]
CKB11_ARATH9.428e-6457.29Cyclin-dependent kinase B1-1 OS=Arabidopsis thalia... [more]
CKB21_ARATH1.042e-6256.15Cyclin-dependent kinase B2-1 OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835953 ID=CF835953; Name=CF835953; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTTTTAATTCAATTTGGTGTATTACATATCAACTATTT
AAAAGAAAAACTGGCACAAACATTTATCCACAAGATCAAGAAAGCCGCGA
ATACACGATTACAAACTAGGCAAATCCAGAGATGACTGTAAAAAGCCATT
CCATGTAGTAAGACTTTTCAGTAAAACTGCAAGTAAAGACAGTCGGCAAA
TTTCGCAAACAATCAAAACCGAAGGCTTCACAATAATGTCAACACTCTAA
TAGCATATACAACAGATATTAGGGTACAAATTCGACGTCCCTGAAGTATT
CATGTTCTAGAGCACTTCTGGCAGTAATTCTTCTGCTTGGATCCATGCAG
AGCATTTTAGAAAGGAGATCAATGCCAGCTGGCTCAAGATTTCGAACAAC
AGTCCCCAACTCCTTAGAAGGCCATTTTGGAAAGGCAGATTTAAAGTCAG
GCAATGAAGTCACTCCAGGCCATGTGTCCTCATTAGGTGTTCCCAAGACT
CTGAAGATCTTGAATAACTCATCAATCTCAGAGTCTCCTGGAAACAATGG
CCGCTGGTTCACCATCTCAGCAAATATACATCCCACCGACCACACATCAA
CTGGAGTAGAGTAATGGCGAGATCCTAGTAATATTTCAGGTGCTCTGTAC
CACAATGTCACCACCTCATGTGTAAATGTCCTAACAGGAATACCAAAAGC
CCTGGCCAGTCCAAAATCTGCTAGCTTTAGTGCATTCGTACGACGATCTA
TTAGCAAATTTTGTGGTTTCAAATCTCGATGAAGAACCCGGTGAGAATGG
CAGTAGGCAATGCCACGTAGAATTTGATAAAGGAATGTTTTTATCAGACG
AGGATCATTAGCAAAATCTGGG
back to top