CF835953

Overview
NameCF835953
Unique NameCF835953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK5_MOUSE (Cell division protein kinase 5 OS=Mus musculus GN=Cdk5 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.657e-58
Identity = 110/192 (57.29%), Postives = 143/192 (74.48%), Query Frame = -2
Query:  287 DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWP-SKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 856
            DP ++K+FL+Q+L+G+ +CHS  VLHRDLKPQNLLI+R    LKLADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  RPLFPG+   D+L +IFR+LGTP E+ WP +T LPD+K  +P +P +  L  VV  L   G DLL  +L  +P +RI+A  AL+H YF D
Sbjct:   99 DPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRN-GELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPAMTKLPDYK-PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSD 288          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK5_HUMAN (Cell division protein kinase 5 OS=Homo sapiens GN=CDK5 PE=1 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 2.657e-58
Identity = 110/192 (57.29%), Postives = 143/192 (74.48%), Query Frame = -2
Query:  287 DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWP-SKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 856
            DP ++K+FL+Q+L+G+ +CHS  VLHRDLKPQNLLI+R    LKLADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  RPLFPG+   D+L +IFR+LGTP E+ WP +T LPD+K  +P +P +  L  VV  L   G DLL  +L  +P +RI+A  AL+H YF D
Sbjct:   99 DPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRN-GELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYK-PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSD 288          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK5_BOVIN (Cell division protein kinase 5 OS=Bos taurus GN=CDK5 PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 2.657e-58
Identity = 110/192 (57.29%), Postives = 143/192 (74.48%), Query Frame = -2
Query:  287 DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWP-SKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 856
            DP ++K+FL+Q+L+G+ +CHS  VLHRDLKPQNLLI+R    LKLADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  RPLFPG+   D+L +IFR+LGTP E+ WP +T LPD+K  +P +P +  L  VV  L   G DLL  +L  +P +RI+A  AL+H YF D
Sbjct:   99 DPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRN-GELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPAMTKLPDYK-PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSD 288          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK5_RAT (Cell division protein kinase 5 OS=Rattus norvegicus GN=Cdk5 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.319e-57
Identity = 109/192 (56.77%), Postives = 142/192 (73.96%), Query Frame = -2
Query:  287 DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWP-SKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 856
            DP ++K+ L+Q+L+G+ +CHS  VLHRDLKPQNLLI+R    LKLADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  RPLFPG+   D+L +IFR+LGTP E+ WP +T LPD+K  +P +P +  L  VV  L   G DLL  +L  +P +RI+A  AL+H YF D
Sbjct:   99 DPEIVKSLLFQLLKGLGFCHSRNVLHRDLKPQNLLINRN-GELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPAMTKLPDYK-PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSD 288          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK17_MOUSE (Cell division protein kinase 17 OS=Mus musculus GN=Cdk17 PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 8.547e-57
Identity = 106/188 (56.38%), Postives = 140/188 (74.47%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            +K FLYQILRG+AYCH  +VLHRDLKPQNLLI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YST +D+W VGCIF EM + RPLFPG +  DEL  IFR+LGTP+++TWPGV+S  +FK+  FPK+  + L      L+  GI+L++K L  +  +R+ A  A++H YFR +
Sbjct:  290 VKLFLYQILRGLAYCHRRKVLHRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGVSSNDEFKNYNFPKYKPQPLINHAPRLDSEGIELITKFLQYESKKRVPAEEAMKHVYFRSL 476          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDC28_ENCCU (Probable cell division control protein 28 homolog OS=Encephalitozoon cuniculi GN=CDC28 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.116e-56
Identity = 102/190 (53.68%), Postives = 134/190 (70.53%), Query Frame = -2
Query:  275 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDVEFV 844
            ++    Q+L  + YCHS  + HRDLKPQN+L+D + N +KLADFGL RA GIP+RT+T EVVTLWYR PE+LLG ++Y   VDVWS  CI AE+V  RP FPGDSEID+LF+IF+VLGTPN   W  V + P++K  FP W   +L T+ R  +P  +DL+SKML  DP  R+TA++ L H+YF  +  +
Sbjct:  107 VRKMSQQLLTAMEYCHSRNIFHRDLKPQNILVDPKEN-IKLADFGLGRAAGIPLRTYTTEVVTLWYRPPELLLGCKYYDASVDVWSAACIMAEVVLMRPFFPGDSEIDQLFRIFKVLGTPNNSRWSNVENFPNYKVEFPVWDPVDLKTIFRG-DPDFVDLISKMLEYDPKMRMTAKNGLSHKYFEGMPLI 294          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK5_DROME (Cell division protein kinase 5 homolog OS=Drosophila melanogaster GN=Cdk5 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.458e-56
Identity = 107/192 (55.73%), Postives = 143/192 (74.48%), Query Frame = -2
Query:  287 DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPS-KELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 856
            D  + ++F+ Q+LRG+A+CHSH VLHRDLKPQNLLI++    LKLADFGLARAFGIPV+ ++ EVVTLWYR P++L G++ Y+T +D+WS GCI AE+ +  RPLFPG   +D+L KIFRVLGTPNED+WPGV+ L D+  A P +P+      +V  L   G DLL K+L   P++RI+A +A++H YF D
Sbjct:   99 DMAVCRSFMLQLLRGLAFCHSHNVLHRDLKPQNLLINKN-GELKLADFGLARAFGIPVKCYSAEVVTLWYRPPDVLFGAKLYTTSIDMWSAGCILAELADAGRPLFPGSDVLDQLMKIFRVLGTPNEDSWPGVSHLSDY-VALPSFPAITSWSQLVPRLNSKGRDLLQKLLICRPNQRISAEAAMQHPYFTD 288          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK17_HUMAN (Cell division protein kinase 17 OS=Homo sapiens GN=CDK17 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.458e-56
Identity = 104/188 (55.32%), Postives = 141/188 (75.00%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            +K FLYQILRG+AYCH  +VLHRDLKPQNLLI+ +   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YST +D+W VGCIF EM + RPLFPG +  DEL  IFR+LGTP+++TWPG++S  +FK+  FPK+  + L      L+  GI+L++K L  +  +R++A  A++H YFR +
Sbjct:  290 VKLFLYQILRGLAYCHRRKVLHRDLKPQNLLINEK-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGISSNEEFKNYNFPKYKPQPLINHAPRLDSEGIELITKFLQYESKKRVSAEEAMKHVYFRSL 476          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK5_GLOMM (Cell division protein kinase 5 homolog OS=Glossina morsitans morsitans GN=Cdk5 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.904e-56
Identity = 106/192 (55.21%), Postives = 142/192 (73.96%), Query Frame = -2
Query:  287 DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPS-KELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRD 856
            D  + ++F+ Q+LRG+A+CHSH VLHRDLKPQNLLI++    LKLADFGLARAFGIPV+ ++ EVVTLWYR P++L G++ Y+T +D+WS GCIFAE+ +  RPLFPG   +D+L KIFRVLGTP E++WPGVT L D+  A P +P+      +V  L   G DLL K+L   P++R++A  A++H YF D
Sbjct:   99 DMAVCRSFMLQLLRGLAFCHSHNVLHRDLKPQNLLINKN-GELKLADFGLARAFGIPVKCYSAEVVTLWYRPPDVLFGAKLYTTSIDMWSAGCIFAELADAGRPLFPGSDVLDQLMKIFRVLGTPTEESWPGVTHLSDY-VALPHFPAITSWSQIVPRLSSKGRDLLQKLLVCRPNQRVSAEQAMQHPYFTD 288          
BLAST of CF835953 vs. ExPASy Swiss-Prot
Match: CDK17_RAT (Cell division protein kinase 17 OS=Rattus norvegicus GN=Cdk17 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.487e-56
Identity = 106/188 (56.38%), Postives = 139/188 (73.94%), Query Frame = -2
Query:  284 IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITARSALEHEYFRDV 844
            +K FLYQILRG+AYCH  +VLHRDLKPQNLLI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YST +D+W VGCIF EM + RPLFPG +  DEL  IFR+LGTP+++TWPGV+S  +FK+  FPK+  + L      L+  GI+L++K L  +  +R  A  A++H YFR +
Sbjct:  290 VKLFLYQILRGLAYCHRRKVLHRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGVSSNDEFKNYNFPKYKPQPLINHAPRLDSEGIELITKFLQYESKKRAPAEEAMKHVYFRSL 476          
The following BLAST results are available for this feature:
BLAST of CF835953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK5_MOUSE2.657e-5857.29Cell division protein kinase 5 OS=Mus musculus GN=... [more]
CDK5_HUMAN2.657e-5857.29Cell division protein kinase 5 OS=Homo sapiens GN=... [more]
CDK5_BOVIN2.657e-5857.29Cell division protein kinase 5 OS=Bos taurus GN=CD... [more]
CDK5_RAT1.319e-5756.77Cell division protein kinase 5 OS=Rattus norvegicu... [more]
CDK17_MOUSE8.547e-5756.38Cell division protein kinase 17 OS=Mus musculus GN... [more]
CDC28_ENCCU1.116e-5653.68Probable cell division control protein 28 homolog ... [more]
CDK5_DROME1.458e-5655.73Cell division protein kinase 5 homolog OS=Drosophi... [more]
CDK17_HUMAN1.458e-5655.32Cell division protein kinase 17 OS=Homo sapiens GN... [more]
CDK5_GLOMM1.904e-5655.21Cell division protein kinase 5 homolog OS=Glossina... [more]
CDK17_RAT2.487e-5656.38Cell division protein kinase 17 OS=Rattus norvegic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835953 ID=CF835953; Name=CF835953; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTTTTAATTCAATTTGGTGTATTACATATCAACTATTT
AAAAGAAAAACTGGCACAAACATTTATCCACAAGATCAAGAAAGCCGCGA
ATACACGATTACAAACTAGGCAAATCCAGAGATGACTGTAAAAAGCCATT
CCATGTAGTAAGACTTTTCAGTAAAACTGCAAGTAAAGACAGTCGGCAAA
TTTCGCAAACAATCAAAACCGAAGGCTTCACAATAATGTCAACACTCTAA
TAGCATATACAACAGATATTAGGGTACAAATTCGACGTCCCTGAAGTATT
CATGTTCTAGAGCACTTCTGGCAGTAATTCTTCTGCTTGGATCCATGCAG
AGCATTTTAGAAAGGAGATCAATGCCAGCTGGCTCAAGATTTCGAACAAC
AGTCCCCAACTCCTTAGAAGGCCATTTTGGAAAGGCAGATTTAAAGTCAG
GCAATGAAGTCACTCCAGGCCATGTGTCCTCATTAGGTGTTCCCAAGACT
CTGAAGATCTTGAATAACTCATCAATCTCAGAGTCTCCTGGAAACAATGG
CCGCTGGTTCACCATCTCAGCAAATATACATCCCACCGACCACACATCAA
CTGGAGTAGAGTAATGGCGAGATCCTAGTAATATTTCAGGTGCTCTGTAC
CACAATGTCACCACCTCATGTGTAAATGTCCTAACAGGAATACCAAAAGC
CCTGGCCAGTCCAAAATCTGCTAGCTTTAGTGCATTCGTACGACGATCTA
TTAGCAAATTTTGTGGTTTCAAATCTCGATGAAGAACCCGGTGAGAATGG
CAGTAGGCAATGCCACGTAGAATTTGATAAAGGAATGTTTTTATCAGACG
AGGATCATTAGCAAAATCTGGG
back to top