CF835954

Overview
NameCF835954
Unique NameCF835954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDK7_XENLA (Cell division protein kinase 7 OS=Xenopus laevis GN=cdk7 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.257e-38
Identity = 81/182 (44.51%), Postives = 120/182 (65.93%), Query Frame = 2
Query:  227 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRL---EQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            QYEK++ +GEG +  VYKAR+  T+  +A+KKI+L    + ++G+  TA+REI LL+E+ H NI+ L D    +  + LVF++++ DL+  +         P  IK+++   L+G+ Y H   +LHRDLKP NLL+D     LKLADFGLA++FG P   +TH+VVT WYR+PE+L G+R Y
Sbjct:   17 QYEKLDFLGEGQFATVYKARDKNTDRIVAIKKIKLGHRAEANDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDT-SLVLTPAHIKSYMLMTLQGLEYLHHLWILHRDLKPNNLLLDEN-GVLKLADFGLAKSFGSPNRIYTHQVVTRWYRSPELLFGARMY 196          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: Y823_ENCCU (Probable cell division protein kinase ECU08_0230 OS=Encephalitozoon cuniculi GN=ECU08_0230 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.560e-38
Identity = 83/181 (45.86%), Postives = 120/181 (66.30%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            M +Y     IG GTYG VY+A +  T E +ALK+IRL  E EG+P TA+REIS+LK++ H NI+ L  ++H++  L +VF ++D +LKK++       N  + I   + Q++ G+ Y H   V+HRDLKPQN+L+      LK+ADFGL+R+  I V  ++ EVVTLWYR+PE+L+GS  Y
Sbjct:    1 MTRYILGALIGSGTYGEVYEAIDTETKEKVALKRIRLN-EKEGMPGTALREISILKKLSHRNIISLVSIIHTDALLTMVFPFIDYELKKYIG-----MNTGKNIMELVNQLICGVHYLHRMNVVHRDLKPQNILV-TSDGVLKIADFGLSRSLEIRVPPYSSEVVTLWYRSPELLMGSTSY 174          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDKL1_DANRE (Cyclin-dependent kinase-like 1 OS=Danio rerio GN=cdkl1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.262e-38
Identity = 75/181 (41.44%), Postives = 116/181 (64.09%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            M++YEK+ KIGEG+YGVV+K RN  T + +A+KK    ++D  +   A+REI +LK+++H N+V L +V   ++KL+LVFEY D  +   +D  P    +  ++K+ ++Q L+ + +CH    +HRD+KP+N+LI +    +KL DFG AR    P   +T  V T WYRAPE+L+G   Y
Sbjct:    1 MEKYEKISKIGEGSYGVVFKCRNKDTGQIVAIKKFVESEDDPIIKKIALREIRMLKQLKHPNLVNLMEVFRRKRKLHLVFEYCDHTVLNELDRYPRGVPE-HMVKSIIWQTLQAVNFCHKQNCIHRDVKPENILITKH-QVIKLCDFGFARILTGPCDYYTDCVATRWYRAPELLVGDTQY 179          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDK12_HUMAN (Cell division protein kinase 12 OS=Homo sapiens GN=CDK12 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.262e-38
Identity = 84/194 (43.30%), Postives = 127/194 (65.46%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK----------KLYLVFEYLDLDLKKHMDS-CPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI-PVXTFTHEVVTLWYRAPEILLGSRHYS 766
            +D+++ +  IGEGTYG VYKAR+  T E +ALKK+RL+ E EG P TAIREI +L+++ H ++V ++++V  ++            YLVFEY+D DL   ++S    F+ D   IK+F+ Q++ G+ YCH    LHRD+K  N+L++  +  +KLADFGLAR +       +T++V+TLWYR PE+LLG   Y+
Sbjct:  724 VDKFDIIGIIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIHRSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDH--IKSFMKQLMEGLEYCHKKNFLHRDIKCSNILLN-NSGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYT 914          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDKL2_RAT (Cyclin-dependent kinase-like 2 OS=Rattus norvegicus GN=Cdkl2 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.484e-38
Identity = 74/181 (40.88%), Postives = 118/181 (65.19%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            M++YE +  +GEG+YG+V K RN  +   +A+KK     +D+ V   A+REI LLK+++H N+V L +V   +K+ YLVFE++D  +   +   P+   D ++++ +L+QI+ GI +CHSH ++HRD+KP+N+L+  ++  +KL DFG AR    P   +T  V T WYRAPE+L+G   Y
Sbjct:    1 MEKYENLGLVGEGSYGMVMKCRNKDSGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLKLFPN-GLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVS-QSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKY 179          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDKL2_MOUSE (Cyclin-dependent kinase-like 2 OS=Mus musculus GN=Cdkl2 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.484e-38
Identity = 74/181 (40.88%), Postives = 118/181 (65.19%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            M++YE +  +GEG+YG+V K RN  +   +A+KK     +D+ V   A+REI LLK+++H N+V L +V   +K+ YLVFE++D  +   +   P+   D ++++ +L+QI+ GI +CHSH ++HRD+KP+N+L+  ++  +KL DFG AR    P   +T  V T WYRAPE+L+G   Y
Sbjct:    1 MEKYENLGLVGEGSYGMVMKCRNKDSGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLKLFPN-GLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVS-QSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKY 179          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CTK1_SCHPO (CTD kinase subunit alpha OS=Schizosaccharomyces pombe GN=lsk1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.239e-37
Identity = 85/180 (47.22%), Postives = 118/180 (65.56%), Query Frame = 2
Query:  230 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLK-KHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLAR-AFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            YEK+++IGEGTYG VYKA N VT + +ALK+IRLEQE +G P T +RE+ +L+ ++H NIVRL +++  +  +Y+VFEY+D DL    ++S   F   P  IK    QI   +AY H   VLHRD+K  N+L++   + LK ADFGLAR         +T+ V+TLW+R PE+LLG   Y
Sbjct:  277 YEKIDQIGEGTYGKVYKAINTVTGDLVALKRIRLEQEKDGFPITTVREVKILQRLRHKNIVRLLEIMVEKSSVYMVFEYMDHDLTGVLLNSQLHFT--PGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNGD-LKFADFGLARFNTSSKSANYTNRVITLWFRPPELLLGETAY 453          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDKL1_MOUSE (Cyclin-dependent kinase-like 1 OS=Mus musculus GN=Cdkl1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.239e-37
Identity = 75/181 (41.44%), Postives = 118/181 (65.19%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHY 763
            M++YEK+ KIGEG+YGVV+K RN  T + +A+K+    ++D  +   A+REI +LK+++H N+V L +V   +++L+LVFEY D  +   +D       +P L+K   +Q L+ + +CH H  +HRD+KP+N+LI ++ +A+KL DFG AR    P   +T  V T WYR+PE+L+G   Y
Sbjct:    1 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLETEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEP-LVKNITWQTLQAVNFCHKHNCIHRDVKPENILITKQ-SAIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQY 179          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: YP62_CAEEL (Putative serine/threonine-protein kinase B0495.2 OS=Caenorhabditis elegans GN=B0495.2 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.618e-37
Identity = 85/189 (44.97%), Postives = 128/189 (67.72%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREIS-LLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLI----KTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVXTFTHEVVTLWYRAPEILLGSRHYS 766
            +D+YE V ++ EGT+GVVY+ ++  T+E +ALK++++E+E EG P TA+REI+ LLK   H NIV +++++   +  K+Y+  E+++ D+K  +D+      + R      KT L Q+L GI + H   +LHRDLK  NLL+  +   LK+ADFGLAR +G P+  FT  VVTLWYR+PE+LLG+R YS
Sbjct:  353 IDEYECVNRVDEGTFGVVYRGKDKRTDEIVALKRLKMEKEKEGFPITALREINMLLKAGNHPNIVNVKEILLGSNMDKIYMAMEFVEHDMKSLLDTMS--RRNKRFSIGEQKTLLQQLLSGIEHMHKLWILHRDLKTSNLLMSHK-GILKIADFGLAREYGDPLKKFTSIVVTLWYRSPELLLGTRLYS 538          
BLAST of CF835954 vs. ExPASy Swiss-Prot
Match: CDK12_RAT (Cell division protein kinase 12 OS=Rattus norvegicus GN=Cdk12 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.618e-37
Identity = 83/194 (42.78%), Postives = 127/194 (65.46%), Query Frame = 2
Query:  221 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK----------KLYLVFEYLDLDLKKHMDS-CPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI-PVXTFTHEVVTLWYRAPEILLGSRHYS 766
            +D+++ +  IGEGTYG VYKA++  T E +ALKK+RL+ E EG P TAIREI +L+++ H ++V ++++V  ++            YLVFEY+D DL   ++S    F+ D   IK+F+ Q++ G+ YCH    LHRD+K  N+L++  +  +KLADFGLAR +       +T++V+TLWYR PE+LLG   Y+
Sbjct:  720 VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLVHQSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDH--IKSFMKQLMEGLDYCHKKNFLHRDIKCSNILLN-NSGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYT 910          
The following BLAST results are available for this feature:
BLAST of CF835954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK7_XENLA4.257e-3844.51Cell division protein kinase 7 OS=Xenopus laevis G... [more]
Y823_ENCCU5.560e-3845.86Probable cell division protein kinase ECU08_0230 O... [more]
CDKL1_DANRE7.262e-3841.44Cyclin-dependent kinase-like 1 OS=Danio rerio GN=c... [more]
CDK12_HUMAN7.262e-3843.30Cell division protein kinase 12 OS=Homo sapiens GN... [more]
CDKL2_RAT9.484e-3840.88Cyclin-dependent kinase-like 2 OS=Rattus norvegicu... [more]
CDKL2_MOUSE9.484e-3840.88Cyclin-dependent kinase-like 2 OS=Mus musculus GN=... [more]
CTK1_SCHPO1.239e-3747.22CTD kinase subunit alpha OS=Schizosaccharomyces po... [more]
CDKL1_MOUSE1.239e-3741.44Cyclin-dependent kinase-like 1 OS=Mus musculus GN=... [more]
YP62_CAEEL1.618e-3744.97Putative serine/threonine-protein kinase B0495.2 O... [more]
CDK12_RAT1.618e-3742.78Cell division protein kinase 12 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835954 ID=CF835954; Name=CF835954; organism=Citrus sinensis; type=EST; length=768bp
CTCCAATCACCTCATTCTTACTCCGGCGATCTCCCCCGTCGGCTTGGATC
GTCCTCGCGTCTGTCACTGTATTATGCATTTGTATTTTTCTCTTTCGTAA
GCGGTTAATTTTCTCTTCATAACACACTGCCGCCACCTACGCCGTCGATT
CGTGCCGTTCTTGTCGCCGTCCGTCGGTAGCAAGGACGCCTCGTTCGTGT
AGCTGTTACATTAAGACTGAATGGACCAGTATGAAAAGGTTGAGAAGATT
GGTGAAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCACGAA
TGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGTG
TGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCAT
GGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTTA
TCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCTT
GCCCAGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTATCAA
ATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCGAGA
TTTGAAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAAAGC
TAGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTANGACATTT
ACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGG
ATCTCGCCATTACTCTAC
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