CF835955

Overview
NameCF835955
Unique NameCF835955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDKA1_ARATH (Cyclin-dependent kinase A-1 OS=Arabidopsis thaliana GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.261e-68
Identity = 119/151 (78.81%), Postives = 136/151 (90.07%), Query Frame = -2
Query:  237 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEFVP 689
            LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGS HYSTPVD+WSVGCIFAEM++Q+PLFPGDSEID+LFKIFR++GTP EDTW GVTSLPD+KSAFPKW   +L T V NL+P G+DLL KML MDP++RI AR+ALEHEYF+D+  +P
Sbjct:  144 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSHHYSTPVDIWSVGCIFAEMISQKPLFPGDSEIDQLFKIFRIMGTPYEDTWRGVTSLPDYKSAFPKWKPTDLETFVPNLDPDGVDLLSKMLLMDPTKRINARAALEHEYFKDLGGMP 294          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK3_HUMAN (Cell division protein kinase 3 OS=Homo sapiens GN=CDK3 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.270e-60
Identity = 108/158 (68.35%), Postives = 130/158 (82.28%), Query Frame = -2
Query:  216 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEFVP*YLLYML 689
            LADFGLARAFG+P+RT+THEVVTLWYRAPEILLGS+ Y+T VD+WS+GCIFAEMV ++ LFPGDSEID+LF+IFR+LGTP+EDTWPGVT LPD+K +FPKW  K L  +V NLEP G DLL ++L  DPS+RITA++AL H YF   E  P    Y+L
Sbjct:  143 LADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGSKFYTTAVDIWSIGCIFAEMVTRKALFPGDSEIDQLFRIFRMLGTPSEDTWPGVTQLPDYKGSFPKWTRKGLEEIVPNLEPEGRDLLMQLLQYDPSQRITAKTALAHPYFSSPEPSPAARQYVL 300          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC28_CANAL (Cell division control protein 28 OS=Candida albicans GN=CDC28 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.163e-57
Identity = 103/146 (70.55%), Postives = 121/146 (82.88%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            LADFGLARAFG+P+R +THEVVTLWYRAPEILLG + YST VD+WSVGCIFAEM N++PLFPGDSEIDE+F+IFR+LGTPNE+ WP V  LPDFKS+FP+W  K L   V +L+  GIDLL +ML  DPSRRI+A+ AL H YF D
Sbjct:  149 LADFGLARAFGVPLRAYTHEVVTLWYRAPEILLGGKQYSTGVDMWSVGCIFAEMCNRKPLFPGDSEIDEIFRIFRILGTPNEEIWPDVNYLPDFKSSFPQWKKKPLSEAVPSLDANGIDLLDQMLVYDPSRRISAKRALIHPYFND 294          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK2_CARAU (Cell division protein kinase 2 OS=Carassius auratus GN=cdk2 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.418e-57
Identity = 100/147 (68.03%), Postives = 125/147 (85.03%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARAFG+PVRT+THEVVTLWYRAPEILLG ++YST VD+WS+GCIFAEM+ ++ LFPGDSEID+LF+IFR LGTP+E  WPGVTS+PD+K +FPKW  ++L  VV  L+  G DLL +ML  DP++RI+A++AL H +FRDV
Sbjct:  143 LADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMITRKALFPGDSEIDQLFRIFRTLGTPDESIWPGVTSMPDYKPSFPKWARQDLSKVVPPLDEDGRDLLGQMLIYDPNKRISAKNALVHRFFRDV 289          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC2_CARAU (Cell division control protein 2 homolog OS=Carassius auratus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.193e-56
Identity = 99/148 (66.89%), Postives = 120/148 (81.08%), Query Frame = -2
Query:  246 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVE 689
            LADFGLARAFG+PVR +THEVVTLWYRAPE+LLG+  YSTPVDVWS+G IFAE+  ++PLF GDSEID+LF+IFR LGTPN + WP V SLPD+K+ FPKW S  L + V+NL+  GIDLL KML  DP +RI+AR A+ H YF D++
Sbjct:  144 LADFGLARAFGVPVRVYTHEVVTLWYRAPEVLLGASRYSTPVDVWSIGTIFAELATKKPLFHGDSEIDQLFRIFRTLGTPNNEVWPDVESLPDYKNTFPKWKSGNLASTVKNLDKNGIDLLTKMLIYDPPKRISARQAMTHPYFDDLD 291          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC2_SCHPO (Cell division control protein 2 OS=Schizosaccharomyces pombe GN=cdc2 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.380e-56
Identity = 99/146 (67.81%), Postives = 119/146 (81.51%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            LADFGLAR+FG+P+R +THE+VTLWYRAPE+LLGSRHYST VD+WSVGCIFAEM+ + PLFPGDSEIDE+FKIF+VLGTPNE+ WPGVT L D+KS FP+W   +L  VV N E   I+LL  ML  DP+ RI+A+ AL+  Y RD
Sbjct:  150 LADFGLARSFGVPLRNYTHEIVTLWYRAPEVLLGSRHYSTGVDIWSVGCIFAEMIRRSPLFPGDSEIDEIFKIFQVLGTPNEEVWPGVTLLQDYKSTFPRWKRMDLHKVVPNGEEDAIELLSAMLVYDPAHRISAKRALQQNYLRD 295          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK2_RAT (Cell division protein kinase 2 OS=Rattus norvegicus GN=Cdk2 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.421e-55
Identity = 99/147 (67.35%), Postives = 123/147 (83.67%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARAFG+PVRT+THEVVTLWYRAPEILLG ++YST VD+WS+GCIFAEMV +R LFPGDSEID+LF+IFR LGTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LL +ML  DP++RI+A++AL H +F+DV
Sbjct:  143 LADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK2_MESAU (Cell division protein kinase 2 OS=Mesocricetus auratus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.421e-55
Identity = 99/147 (67.35%), Postives = 123/147 (83.67%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARAFG+PVRT+THEVVTLWYRAPEILLG ++YST VD+WS+GCIFAEMV +R LFPGDSEID+LF+IFR LGTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LL +ML  DP++RI+A++AL H +F+DV
Sbjct:  143 LADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK2_HUMAN (Cell division protein kinase 2 OS=Homo sapiens GN=CDK2 PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.421e-55
Identity = 99/147 (67.35%), Postives = 123/147 (83.67%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARAFG+PVRT+THEVVTLWYRAPEILLG ++YST VD+WS+GCIFAEMV +R LFPGDSEID+LF+IFR LGTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LL +ML  DP++RI+A++AL H +F+DV
Sbjct:  143 LADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK2_CRIGR (Cell division protein kinase 2 OS=Cricetulus griseus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.421e-55
Identity = 99/147 (67.35%), Postives = 123/147 (83.67%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARAFG+PVRT+THEVVTLWYRAPEILLG ++YST VD+WS+GCIFAEMV +R LFPGDSEID+LF+IFR LGTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LL +ML  DP++RI+A++AL H +F+DV
Sbjct:  143 LADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289          
The following BLAST results are available for this feature:
BLAST of CF835955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKA1_ARATH3.261e-6878.81Cyclin-dependent kinase A-1 OS=Arabidopsis thalian... [more]
CDK3_HUMAN4.270e-6068.35Cell division protein kinase 3 OS=Homo sapiens GN=... [more]
CDC28_CANAL1.163e-5770.55Cell division control protein 28 OS=Candida albica... [more]
CDK2_CARAU4.418e-5768.03Cell division protein kinase 2 OS=Carassius auratu... [more]
CDC2_CARAU2.193e-5666.89Cell division control protein 2 homolog OS=Carassi... [more]
CDC2_SCHPO6.380e-5667.81Cell division control protein 2 OS=Schizosaccharom... [more]
CDK2_RAT1.421e-5567.35Cell division protein kinase 2 OS=Rattus norvegicu... [more]
CDK2_MESAU1.421e-5567.35Cell division protein kinase 2 OS=Mesocricetus aur... [more]
CDK2_HUMAN1.421e-5567.35Cell division protein kinase 2 OS=Homo sapiens GN=... [more]
CDK2_CRIGR1.421e-5567.35Cell division protein kinase 2 OS=Cricetulus grise... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C24_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835955 ID=CF835955; Name=CF835955; organism=Citrus sinensis; type=EST; length=690bp
TACATATCTCCTATTAAAAGAAAAACTGGCACAAACATTTATCCACCAGA
TCTAGAAAGCCGCGAATACACGATTACAAACTAGGCAAATCCAGAGATGA
CTGTAAAAAGCCATTCCATGTAGTAAGACTTTTCAGTAAAACTGCAAGTA
AAGACAGTCGGCAAATTTCGCAAACAATCAAAACCGAAGGCTTCACAATA
ATGTCAACACTCTAATAGCATATACAACAGATATTAGGGTACAAATTCGA
CGTCCCTGAAGTATTCATGTTCTAGAGCACTTCTGGCAGTAATTCTTCTG
CTTGGATCCATGCAGAGCATTTTAAAAAGGAGATCAATGCCAGCTGGCTC
AAGATTTCGAACAACAGTCCCCAACTCCTTAGAAGGCCATTTTGGAAAGG
CAGATTTAAAGTCAGGCAATGAAGTCACTCCAGGCCATGTGTCCTCATTA
GGTGTTCCCAAGACTCTGAAGATCTTGAATAACTCATCAATCTCAGAGTC
TCCTGGAAACAATGGCCGCTGGTTCACCATCTCAGCAAATATACATCCCA
CCGACCACACATCAACTGGAGTAGAGTAATGGCGAGATCCTAGTAATATT
TCAGGTGCTCTGTACCACAATGTCACCACCTCATGTGTAAATGTCCTAAC
AGGAATACCAAAAGCCCTGGCCAGTCCAAAATCTGCTAGC
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