CF835955

Overview
NameCF835955
Unique NameCF835955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CSK21_RAT (Casein kinase II subunit alpha OS=Rattus norvegicus GN=Csnk2a1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSL-----PDFKSAFPKWPSKELGTVVRN-----LEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+ A M+  + P F G    D+L +I +VLGT  ED +  +        P F     +   K     V +     + P  +D L K+L  D   R+TAR A+EH YF  V
Sbjct:  173 LIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT--EDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CSK21_RABIT (Casein kinase II subunit alpha OS=Oryctolagus cuniculus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSL-----PDFKSAFPKWPSKELGTVVRN-----LEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+ A M+  + P F G    D+L +I +VLGT  ED +  +        P F     +   K     V +     + P  +D L K+L  D   R+TAR A+EH YF  V
Sbjct:  173 LIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT--EDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CSK21_HUMAN (Casein kinase II subunit alpha OS=Homo sapiens GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSL-----PDFKSAFPKWPSKELGTVVRN-----LEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+ A M+  + P F G    D+L +I +VLGT  ED +  +        P F     +   K     V +     + P  +D L K+L  D   R+TAR A+EH YF  V
Sbjct:  173 LIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT--EDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CSK21_BOVIN (Casein kinase II subunit alpha OS=Bos taurus GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSL-----PDFKSAFPKWPSKELGTVVRN-----LEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+ A M+  + P F G    D+L +I +VLGT  ED +  +        P F     +   K     V +     + P  +D L K+L  D   R+TAR A+EH YF  V
Sbjct:  173 LIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT--EDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: DYRK4_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Mus musculus GN=Dyrk4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = -2
Query:  252 WYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDF--KSAFPK----------WP-SKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 617
            +YR+PE++LG   Y+  +D+WS+GCI AE+    PLFPG++E+++L  I  VLG P        +    F      PK          +P SK+L  VV+  + + +D L + L  +PS R+T   AL+H +  +
Sbjct:  384 FYRSPEVILG-HPYNMAIDMWSLGCIMAELYTGYPLFPGENEVEQLACIMEVLGLPPAHFTQTASRRQVFFDSKGLPKNINNNRGGKRYPDSKDLTMVVKTYDSSFLDFLRRCLVWEPSLRMTPEQALKHAWIHE 517          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CSK21_CHICK (Casein kinase II subunit alpha OS=Gallus gallus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 50/155 (32.26%), Postives = 78/155 (50.32%), Query Frame = -2
Query:  258 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSL-----PDFKSAFPKWPSKELGTVVRN-----LEPAGIDLLFKMLCMDPSRRITARSALEHEYF 689
            L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+ A M+  + P F G    D+L +I +VLGT  ED +  +        P F     +   K     V +     + P  +D L K+L  D   R+TAR A+EH YF
Sbjct:  173 LIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT--EDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CSK22_MOUSE (Casein kinase II subunit alpha' OS=Mus musculus GN=Csnk2a2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 50/159 (31.45%), Postives = 80/159 (50.31%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPG------VTSLPDFKSAFPKWPSKELGTVVRN-----LEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+ A M+  + P F G    D+L +I +VLGT   D   G      +   P F     +   K     + +     + P  +DLL K+L  D  +R+TA+ A+EH YF  V
Sbjct:  174 LIDWGLAE-FYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGQDNYDQLVRIAKVLGT---DELYGYLKKYHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPV 328          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CSK22_BOVIN (Casein kinase II subunit alpha' OS=Bos taurus GN=CSNK2A2 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 50/159 (31.45%), Postives = 80/159 (50.31%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV-NQRPLFPGDSEIDELFKIFRVLGTPNEDTWPG------VTSLPDFKSAFPKWPSKELGTVVRN-----LEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            L D+GLA  F  P + +   V + +++ PE+L+  + Y   +D+WS+GC+ A M+  + P F G    D+L +I +VLGT   D   G      +   P F     +   K     + +     + P  +DLL K+L  D  +R+TA+ A+EH YF  V
Sbjct:  174 LIDWGLAE-FYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGQDNYDQLVRIAKVLGT---DELYGYLKKYHIDLDPHFNDILGQHSRKRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPV 328          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: DYRK4_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Homo sapiens GN=DYRK4 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = -2
Query:  261 WYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDF--KSAFPK----------WP-SKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEY 617
            +YR+PE++LG   Y   +D+WS+GCI AE+    PLFPG++E+++L  I  VLG P        +    F     FPK          +P SK+L  V++  + + +D L + L  +PS R+T   AL+H +
Sbjct:  269 FYRSPEVILG-HPYDVAIDMWSLGCITAELYTGYPLFPGENEVEQLACIMEVLGLPPAGFIQTASRRQTFFDSKGFPKNITNNRGKKRYPDSKDLTMVLKTYDTSFLDFLRRCLVWEPSLRMTPDQALKHAW 399          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: DYRK3_MACFA (Dual specificity tyrosine-phosphorylation-regulated kinase 3 OS=Macaca fascicularis GN=DYRK3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = -2
Query:  261 WYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTP---------------NEDTWP---GVTSLPDFKSAF---------PKWP--SKELGTVVRNLEP-AGIDLLFKMLCMDPSRRITARSALEHEY 617
            +YRAPEI+LGSR YSTP+D+WS GCI AE++  +PLFPG+ E D+L  +  +LG P               N    P    VT+  D +             + P  SK+ GT ++  +    I+ L + L  DPS R+T   AL H +
Sbjct:  354 FYRAPEIILGSR-YSTPIDIWSFGCILAELLTGQPLFPGEDEGDQLACMMELLGMPPPKLLEQSKRAKYFINSKGIPRYCSVTTQADGRVVLVGGRSRRGKKRGPPGSKDWGTALKGCDDYLFIEFLKRCLHWDPSARLTPAQALRHPW 501          
The following BLAST results are available for this feature:
BLAST of CF835955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CSK21_RAT6.041e-1432.28Casein kinase II subunit alpha OS=Rattus norvegicu... [more]
CSK21_RABIT6.041e-1432.28Casein kinase II subunit alpha OS=Oryctolagus cuni... [more]
CSK21_HUMAN6.041e-1432.28Casein kinase II subunit alpha OS=Homo sapiens GN=... [more]
CSK21_BOVIN6.041e-1432.28Casein kinase II subunit alpha OS=Bos taurus GN=CS... [more]
DYRK4_MOUSE7.890e-1434.07Dual specificity tyrosine-phosphorylation-regulate... [more]
CSK21_CHICK7.890e-1432.26Casein kinase II subunit alpha OS=Gallus gallus GN... [more]
CSK22_MOUSE1.030e-1331.45Casein kinase II subunit alpha' OS=Mus musculus GN... [more]
CSK22_BOVIN1.030e-1331.45Casein kinase II subunit alpha' OS=Bos taurus GN=C... [more]
DYRK4_HUMAN1.346e-1334.85Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK3_MACFA1.346e-1336.24Dual specificity tyrosine-phosphorylation-regulate... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C24_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835955 ID=CF835955; Name=CF835955; organism=Citrus sinensis; type=EST; length=690bp
TACATATCTCCTATTAAAAGAAAAACTGGCACAAACATTTATCCACCAGA
TCTAGAAAGCCGCGAATACACGATTACAAACTAGGCAAATCCAGAGATGA
CTGTAAAAAGCCATTCCATGTAGTAAGACTTTTCAGTAAAACTGCAAGTA
AAGACAGTCGGCAAATTTCGCAAACAATCAAAACCGAAGGCTTCACAATA
ATGTCAACACTCTAATAGCATATACAACAGATATTAGGGTACAAATTCGA
CGTCCCTGAAGTATTCATGTTCTAGAGCACTTCTGGCAGTAATTCTTCTG
CTTGGATCCATGCAGAGCATTTTAAAAAGGAGATCAATGCCAGCTGGCTC
AAGATTTCGAACAACAGTCCCCAACTCCTTAGAAGGCCATTTTGGAAAGG
CAGATTTAAAGTCAGGCAATGAAGTCACTCCAGGCCATGTGTCCTCATTA
GGTGTTCCCAAGACTCTGAAGATCTTGAATAACTCATCAATCTCAGAGTC
TCCTGGAAACAATGGCCGCTGGTTCACCATCTCAGCAAATATACATCCCA
CCGACCACACATCAACTGGAGTAGAGTAATGGCGAGATCCTAGTAATATT
TCAGGTGCTCTGTACCACAATGTCACCACCTCATGTGTAAATGTCCTAAC
AGGAATACCAAAAGCCCTGGCCAGTCCAAAATCTGCTAGC
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