CF835955

Overview
NameCF835955
Unique NameCF835955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK2_MOUSE (Cell division protein kinase 2 OS=Mus musculus GN=Cdk2 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.866e-49
Identity = 99/195 (50.77%), Postives = 123/195 (63.08%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM------------------------------------------------VNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARAFG+PVRT+THEVVTLWYRAPEILLG ++YST VD+WS+GCIFAEM                                                V +R LFPGDSEID+LF+IFR LGTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LL +ML  DP++RI+A++AL H +F+DV
Sbjct:  143 LADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMHLVCTQHHAKCCGEHRRNGRHSLCPLCSYLEVAASQGGGMTAVSAPHPVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 337          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CKB11_ORYSJ (Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp. japonica GN=CDKB1-1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.683e-48
Identity = 88/148 (59.46%), Postives = 116/148 (78.38%), Query Frame = -2
Query:  246 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVE 689
            +AD GL RAF +P++++THE+VTLWYRAPE+LLGS HYST VD+WSVGCIFAEMV ++ LFPGDSE+ +L  IFR+LGTP E+ WPGVT L D+   FP+W  + L   V +LEP G+DLL KML  +P+ RI+A++A+EH YF  ++
Sbjct:  153 IADLGLGRAFTVPMKSYTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVRRQALFPGDSELQQLLHIFRLLGTPTEEQWPGVTDLRDWHE-FPQWKPQILERQVPSLEPEGVDLLSKMLQYNPANRISAKAAMEHPYFDSLD 299          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC2H_THEPA (Cell division control protein 2 homolog OS=Theileria parva GN=CRK2 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.683e-48
Identity = 88/154 (57.14%), Postives = 120/154 (77.92%), Query Frame = -2
Query:  228 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEFVP*YL 689
            LADFGLARAF IPVR++THEVVTLWYRAP++L+GS+ YST VD+WSVGCIFAEM+N  PLFPG SE D+L +IF++LGTP+ D+WP V +LP +   F  +  +   ++V  L  +GIDL+ +ML +DP +RI+A+ AL+H+YF+D+   P +L
Sbjct:  141 LADFGLARAFAIPVRSYTHEVVTLWYRAPDVLMGSKKYSTAVDIWSVGCIFAEMINGVPLFPGISEQDQLKRIFKILGTPSVDSWPQVVNLPAYNPDFSYYEKQSWSSIVPKLNESGIDLISRMLQLDPVQRISAKEALKHDYFKDLHRPPEFL 294          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CKB22_ARATH (Cyclin-dependent kinase B2-2 OS=Arabidopsis thaliana GN=CDKB2-2 PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.749e-48
Identity = 85/147 (57.82%), Postives = 117/147 (79.59%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            +AD GLARAF +P++ +THE++TLWYRAPE+LLG+ HYST VD+WSVGCIFAE+V ++ +F GDSE+ +L +IFR+LGTPNE+ WPGV+ L D+   +P+W    L T V NL+ AG+DLL KML  +P++RI+A+ A+EH YF D+
Sbjct:  164 IADLGLARAFTLPMKKYTHEILTLWYRAPEVLLGATHYSTGVDMWSVGCIFAELVTKQAIFAGDSELQQLLRIFRLLGTPNEEVWPGVSKLKDWHE-YPQWKPLSLSTAVPNLDEAGLDLLSKMLEYEPAKRISAKKAMEHPYFDDL 309          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC2H_THEAN (Cell division control protein 2 homolog OS=Theileria annulata GN=CRK2 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.749e-48
Identity = 87/147 (59.18%), Postives = 117/147 (79.59%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARAF IPVR++THEVVTLWYRAP++L+GS+ YST VD+WSVGCIFAEM+N  PLFPG SE D+L +IF++LGTPN D+WP V +LP +   F  +  +   ++V  L  +GIDL+ +ML +DP +RI+A+ AL+H+YF+D+
Sbjct:  141 LADFGLARAFAIPVRSYTHEVVTLWYRAPDVLMGSKKYSTAVDIWSVGCIFAEMINGVPLFPGISEQDQLKRIFKILGTPNVDSWPQVVNLPAYNPDFCYYEKQAWSSIVPKLNESGIDLISRMLQLDPVQRISAKEALKHDYFKDL 287          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CKB11_ARATH (Cyclin-dependent kinase B1-1 OS=Arabidopsis thaliana GN=CDKB1-1 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.091e-47
Identity = 86/148 (58.11%), Postives = 115/148 (77.70%), Query Frame = -2
Query:  246 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVE 689
            +AD GL RAF +P++++THE+VTLWYRAPE+LLGS HYST VD+WSVGCIFAEMV ++ LFPGDSE  +L  IFR+LGTP E  WPGV++L D+   +PKW  ++L   V +L P G+DLL KML  +P+ RI+A++AL+H YF  ++
Sbjct:  159 IADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEQQWPGVSTLRDW-HVYPKWEPQDLTLAVPSLSPQGVDLLTKMLKYNPAERISAKTALDHPYFDSLD 305          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CKB12_ARATH (Cyclin-dependent kinase B1-2 OS=Arabidopsis thaliana GN=CDKB1-2 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.425e-47
Identity = 85/148 (57.43%), Postives = 114/148 (77.03%), Query Frame = -2
Query:  246 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVE 689
            +AD GL+RAF +P++ +THE+VTLWYRAPE+LLGS HYST VD+WSVGCIFAEM+ ++ LFPGDSE  +L  IFR+LGTP E  WPGV +L D+   +PKW  ++L   V +L P GIDLL +ML  +P+ RI+A++AL+H YF  ++
Sbjct:  161 IADLGLSRAFTVPLKAYTHEIVTLWYRAPEVLLGSTHYSTAVDIWSVGCIFAEMIRRQALFPGDSEFQQLLHIFRLLGTPTEQQWPGVMALRDW-HVYPKWEPQDLSRAVPSLSPEGIDLLTQMLKYNPAERISAKAALDHPYFDSLD 307          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CKB21_ORYSJ (Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp. japonica GN=CDKB2-1 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.430e-47
Identity = 81/147 (55.10%), Postives = 114/147 (77.55%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            +AD GL+R+F +P++ +THE++TLWYRAPE+LLG+ HYSTPVD+WSVGCIFAE+   +PLF GDSE+ +L  IF++LGTPNE  WPGV+ LP++   +P+W   ++  +V  L+   +DLL KML  +PS+RI+A+ A+EH YF DV
Sbjct:  176 IADLGLSRSFTVPLKKYTHEILTLWYRAPEVLLGAAHYSTPVDIWSVGCIFAELATNQPLFAGDSEVQQLLHIFKLLGTPNEQVWPGVSKLPNWHE-YPQWNPSKVSDLVHGLDADALDLLEKMLQYEPSKRISAKKAMEHPYFNDV 321          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CC2H3_TRYBB (Cell division control protein 2 homolog 3 OS=Trypanosoma brucei brucei GN=CRK3 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.206e-46
Identity = 88/151 (58.28%), Postives = 115/151 (76.16%), Query Frame = -2
Query:  243 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTP--NEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEF 689
            +ADFGLARAF IP+ T+THEVVTLWYRAPEILLG +HY+  VD+WS+GCIFAE+   + LF GDSEI +LF+IF+VLGTP   E +W GV+SLPD++  FPKW  K L  V+  L+   +DLL +ML  +P+ RI+A++AL+H +F D  F
Sbjct:  161 IADFGLARAFQIPMHTYTHEVVTLWYRAPEILLGEKHYTPAVDMWSIGCIFAELARGKVLFRGDSEIGQLFEIFQVLGTPMDAEGSWLGVSSLPDYRDVFPKWSGKPLTQVLPTLDGDAVDLLSQMLRYNPAERISAKAALQHPWFSDAMF 311          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDC2_CAEBR (Cell division control protein 2 homolog OS=Caenorhabditis briggsae GN=cdk-1 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.057e-46
Identity = 89/157 (56.69%), Postives = 113/157 (71.97%), Query Frame = -2
Query:  246 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWP---------SKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVE 689
            LADFGLARA GIP+R +THEVVTLWYRAPEIL+G++ YS  VD+WS+GCIFAEM  ++PLF GDSEIDELF+IFR+LGTP E  W GV SLPD+K+ FPKW           K+ G  +  ++     LL  +L  DP+ RI+++ AL H YF D++
Sbjct:  156 LADFGLARAIGIPIRVYTHEVVTLWYRAPEILMGAQRYSMGVDMWSIGCIFAEMATKKPLFQGDSEIDELFRIFRILGTPTELEWNGVESLPDYKATFPKWRENFLRDKFYDKKSGNYL--MDEDAFSLLEGLLIYDPALRISSKKALHHPYFNDID 310          
The following BLAST results are available for this feature:
BLAST of CF835955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK2_MOUSE9.866e-4950.77Cell division protein kinase 2 OS=Mus musculus GN=... [more]
CKB11_ORYSJ1.683e-4859.46Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp... [more]
CDC2H_THEPA1.683e-4857.14Cell division control protein 2 homolog OS=Theiler... [more]
CKB22_ARATH3.749e-4857.82Cyclin-dependent kinase B2-2 OS=Arabidopsis thalia... [more]
CDC2H_THEAN3.749e-4859.18Cell division control protein 2 homolog OS=Theiler... [more]
CKB11_ARATH1.091e-4758.11Cyclin-dependent kinase B1-1 OS=Arabidopsis thalia... [more]
CKB12_ARATH1.425e-4757.43Cyclin-dependent kinase B1-2 OS=Arabidopsis thalia... [more]
CKB21_ORYSJ2.430e-4755.10Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp... [more]
CC2H3_TRYBB1.206e-4658.28Cell division control protein 2 homolog 3 OS=Trypa... [more]
CDC2_CAEBR2.057e-4656.69Cell division control protein 2 homolog OS=Caenorh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02C24_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835955 ID=CF835955; Name=CF835955; organism=Citrus sinensis; type=EST; length=690bp
TACATATCTCCTATTAAAAGAAAAACTGGCACAAACATTTATCCACCAGA
TCTAGAAAGCCGCGAATACACGATTACAAACTAGGCAAATCCAGAGATGA
CTGTAAAAAGCCATTCCATGTAGTAAGACTTTTCAGTAAAACTGCAAGTA
AAGACAGTCGGCAAATTTCGCAAACAATCAAAACCGAAGGCTTCACAATA
ATGTCAACACTCTAATAGCATATACAACAGATATTAGGGTACAAATTCGA
CGTCCCTGAAGTATTCATGTTCTAGAGCACTTCTGGCAGTAATTCTTCTG
CTTGGATCCATGCAGAGCATTTTAAAAAGGAGATCAATGCCAGCTGGCTC
AAGATTTCGAACAACAGTCCCCAACTCCTTAGAAGGCCATTTTGGAAAGG
CAGATTTAAAGTCAGGCAATGAAGTCACTCCAGGCCATGTGTCCTCATTA
GGTGTTCCCAAGACTCTGAAGATCTTGAATAACTCATCAATCTCAGAGTC
TCCTGGAAACAATGGCCGCTGGTTCACCATCTCAGCAAATATACATCCCA
CCGACCACACATCAACTGGAGTAGAGTAATGGCGAGATCCTAGTAATATT
TCAGGTGCTCTGTACCACAATGTCACCACCTCATGTGTAAATGTCCTAAC
AGGAATACCAAAAGCCCTGGCCAGTCCAAAATCTGCTAGC
back to top