CF835955

Overview
NameCF835955
Unique NameCF835955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK5_RAT (Cell division protein kinase 5 OS=Rattus norvegicus GN=Cdk5 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.889e-41
Identity = 83/148 (56.08%), Postives = 107/148 (72.30%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWP-SKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            LADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  RPLFPG+   D+L +IFR+LGTP E+ WP +T LPD+K  +P +P +  L  VV  L   G DLL  +L  +P +RI+A  AL+H YF D
Sbjct:  142 LADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPAMTKLPDYK-PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSD 288          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK5_MOUSE (Cell division protein kinase 5 OS=Mus musculus GN=Cdk5 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.889e-41
Identity = 83/148 (56.08%), Postives = 107/148 (72.30%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWP-SKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            LADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  RPLFPG+   D+L +IFR+LGTP E+ WP +T LPD+K  +P +P +  L  VV  L   G DLL  +L  +P +RI+A  AL+H YF D
Sbjct:  142 LADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPAMTKLPDYK-PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSD 288          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK5_HUMAN (Cell division protein kinase 5 OS=Homo sapiens GN=CDK5 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 9.889e-41
Identity = 83/148 (56.08%), Postives = 107/148 (72.30%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWP-SKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            LADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  RPLFPG+   D+L +IFR+LGTP E+ WP +T LPD+K  +P +P +  L  VV  L   G DLL  +L  +P +RI+A  AL+H YF D
Sbjct:  142 LADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYK-PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSD 288          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK5_BOVIN (Cell division protein kinase 5 OS=Bos taurus GN=CDK5 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 9.889e-41
Identity = 83/148 (56.08%), Postives = 107/148 (72.30%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWP-SKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            LADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  RPLFPG+   D+L +IFR+LGTP E+ WP +T LPD+K  +P +P +  L  VV  L   G DLL  +L  +P +RI+A  AL+H YF D
Sbjct:  142 LADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPAMTKLPDYK-PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSD 288          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK5_DROME (Cell division protein kinase 5 homolog OS=Drosophila melanogaster GN=Cdk5 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.203e-40
Identity = 81/148 (54.73%), Postives = 108/148 (72.97%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPS-KELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            LADFGLARAFGIPV+ ++ EVVTLWYR P++L G++ Y+T +D+WS GCI AE+ +  RPLFPG   +D+L KIFRVLGTPNED+WPGV+ L D+  A P +P+      +V  L   G DLL K+L   P++RI+A +A++H YF D
Sbjct:  142 LADFGLARAFGIPVKCYSAEVVTLWYRPPDVLFGAKLYTTSIDMWSAGCILAELADAGRPLFPGSDVLDQLMKIFRVLGTPNEDSWPGVSHLSDY-VALPSFPAITSWSQLVPRLNSKGRDLLQKLLICRPNQRISAEAAMQHPYFTD 288          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK5_XENLA (Cell division protein kinase 5 OS=Xenopus laevis GN=cdk5 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.877e-40
Identity = 83/148 (56.08%), Postives = 106/148 (71.62%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWP-SKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            LADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  RPLFPG+   D+L +IFR+LGTP E+ WP +T LPD+K  +P +P +  L  VV  L   G DLL  +L  +P +RI A  AL+H YF D
Sbjct:  142 LADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPAMTKLPDYK-PYPMYPATMSLVNVVPKLNATGRDLLQNLLKCNPVQRICADEALQHPYFAD 288          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK5_GLOMM (Cell division protein kinase 5 homolog OS=Glossina morsitans morsitans GN=Cdk5 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.877e-40
Identity = 80/148 (54.05%), Postives = 107/148 (72.30%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPS-KELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            LADFGLARAFGIPV+ ++ EVVTLWYR P++L G++ Y+T +D+WS GCIFAE+ +  RPLFPG   +D+L KIFRVLGTP E++WPGVT L D+  A P +P+      +V  L   G DLL K+L   P++R++A  A++H YF D
Sbjct:  142 LADFGLARAFGIPVKCYSAEVVTLWYRPPDVLFGAKLYTTSIDMWSAGCIFAELADAGRPLFPGSDVLDQLMKIFRVLGTPTEESWPGVTHLSDY-VALPHFPAITSWSQIVPRLSSKGRDLLQKLLVCRPNQRVSAEQAMQHPYFTD 288          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: PHO85_CANGA (Negative regulator of the PHO system OS=Candida glabrata GN=PHO85 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.093e-39
Identity = 82/151 (54.30%), Postives = 107/151 (70.86%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSL----PDFKSAFPKWPSKELGTVVRN-LEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            L DFGLARAFGIPV TF+ EVVTLWYRAP++L+GSR YST +D+WS GCI AEM+  +PLFPG ++ ++L  IF  +GTPNE TWPGVTSL    P+F+   PK    EL   V+  L+   IDLL  +L ++P  R++A+ AL H +F +
Sbjct:  148 LGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDKMGTPNETTWPGVTSLPKYNPNFQQRLPKDLKAELQPYVKEPLDDNVIDLLHGLLQLNPDMRLSAKQALLHPWFSE 298          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK17_HUMAN (Cell division protein kinase 17 OS=Homo sapiens GN=CDK17 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.093e-39
Identity = 76/148 (51.35%), Postives = 107/148 (72.30%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARA  +P +T+++EVVTLWYR P++LLGS  YST +D+W VGCIF EM + RPLFPG +  DEL  IFR+LGTP+++TWPG++S  +FK+  FPK+  + L      L+  GI+L+ K L  +  +R++A  A++H YFR +
Sbjct:  329 LADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGISSNEEFKNYNFPKYKPQPLINHAPRLDSEGIELITKFLQYESKKRVSAEEAMKHVYFRSL 476          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK17_MOUSE (Cell division protein kinase 17 OS=Mus musculus GN=Cdk17 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.428e-39
Identity = 77/148 (52.03%), Postives = 106/148 (71.62%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARA  +P +T+++EVVTLWYR P++LLGS  YST +D+W VGCIF EM + RPLFPG +  DEL  IFR+LGTP+++TWPGV+S  +FK+  FPK+  + L      L+  GI+L+ K L  +  +R+ A  A++H YFR +
Sbjct:  329 LADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGVSSNDEFKNYNFPKYKPQPLINHAPRLDSEGIELITKFLQYESKKRVPAEEAMKHVYFRSL 476          
The following BLAST results are available for this feature:
BLAST of CF835955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK5_RAT9.889e-4156.08Cell division protein kinase 5 OS=Rattus norvegicu... [more]
CDK5_MOUSE9.889e-4156.08Cell division protein kinase 5 OS=Mus musculus GN=... [more]
CDK5_HUMAN9.889e-4156.08Cell division protein kinase 5 OS=Homo sapiens GN=... [more]
CDK5_BOVIN9.889e-4156.08Cell division protein kinase 5 OS=Bos taurus GN=CD... [more]
CDK5_DROME2.203e-4054.73Cell division protein kinase 5 homolog OS=Drosophi... [more]
CDK5_XENLA2.877e-4056.08Cell division protein kinase 5 OS=Xenopus laevis G... [more]
CDK5_GLOMM2.877e-4054.05Cell division protein kinase 5 homolog OS=Glossina... [more]
PHO85_CANGA1.093e-3954.30Negative regulator of the PHO system OS=Candida gl... [more]
CDK17_HUMAN1.093e-3951.35Cell division protein kinase 17 OS=Homo sapiens GN... [more]
CDK17_MOUSE1.428e-3952.03Cell division protein kinase 17 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C24_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835955 ID=CF835955; Name=CF835955; organism=Citrus sinensis; type=EST; length=690bp
TACATATCTCCTATTAAAAGAAAAACTGGCACAAACATTTATCCACCAGA
TCTAGAAAGCCGCGAATACACGATTACAAACTAGGCAAATCCAGAGATGA
CTGTAAAAAGCCATTCCATGTAGTAAGACTTTTCAGTAAAACTGCAAGTA
AAGACAGTCGGCAAATTTCGCAAACAATCAAAACCGAAGGCTTCACAATA
ATGTCAACACTCTAATAGCATATACAACAGATATTAGGGTACAAATTCGA
CGTCCCTGAAGTATTCATGTTCTAGAGCACTTCTGGCAGTAATTCTTCTG
CTTGGATCCATGCAGAGCATTTTAAAAAGGAGATCAATGCCAGCTGGCTC
AAGATTTCGAACAACAGTCCCCAACTCCTTAGAAGGCCATTTTGGAAAGG
CAGATTTAAAGTCAGGCAATGAAGTCACTCCAGGCCATGTGTCCTCATTA
GGTGTTCCCAAGACTCTGAAGATCTTGAATAACTCATCAATCTCAGAGTC
TCCTGGAAACAATGGCCGCTGGTTCACCATCTCAGCAAATATACATCCCA
CCGACCACACATCAACTGGAGTAGAGTAATGGCGAGATCCTAGTAATATT
TCAGGTGCTCTGTACCACAATGTCACCACCTCATGTGTAAATGTCCTAAC
AGGAATACCAAAAGCCCTGGCCAGTCCAAAATCTGCTAGC
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