CF835955

Overview
NameCF835955
Unique NameCF835955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK18_PONAB (Cell division protein kinase 18 OS=Pongo abelii GN=CDK18 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.155e-39
Identity = 76/148 (51.35%), Postives = 105/148 (70.95%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARA  +P +T+++EVVTLWYR P++LLGS  YSTP+D+W VGCI  EM   RPLFPG +  +EL  IFR+LGTP E+TWPGVT+  +F++ +FP++  + L +    L+  GI LL  +L  +   R++A +AL H YFR +
Sbjct:  279 LADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCIHYEMATGRPLFPGSTVKEELHLIFRLLGTPTEETWPGVTAFSEFRTYSFPRYLPQPLISHAPRLDTDGIQLLSSLLLYESKSRMSAEAALSHPYFRSL 426          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK17_RAT (Cell division protein kinase 17 OS=Rattus norvegicus GN=Cdk17 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.155e-39
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARA  +P +T+++EVVTLWYR P++LLGS  YST +D+W VGCIF EM + RPLFPG +  DEL  IFR+LGTP+++TWPGV+S  +FK+  FPK+  + L      L+  GI+L+ K L  +  +R  A  A++H YFR +
Sbjct:  329 LADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGVSSNDEFKNYNFPKYKPQPLINHAPRLDSEGIELITKFLQYESKKRAPAEEAMKHVYFRSL 476          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CC2H1_TRYCO (Cell division control protein 2 homolog 1 OS=Trypanosoma congolense GN=CRK1 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.155e-39
Identity = 82/160 (51.25%), Postives = 103/160 (64.38%), Query Frame = -2
Query:  243 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAF--PKWPSKELGT---------VVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEF 689
            LADFGL RAFGIPV+ +THEVVTLWYR+P++LLGS  Y TPVD+WSVGCIFAEM    PLF G ++ D+L +IFR LGTP+   WP +   P+  +    P++    + T             L P GIDLL ++L  +P  R+TA  ALEH YF  VEF
Sbjct:  143 LADFGLGRAFGIPVKKYTHEVVTLWYRSPDVLLGSTQYGTPVDIWSVGCIFAEMAIGAPLFAGKNDADQLLRIFRFLGTPSSQVWPSMNLYPNSTNMLSKPEFQQNLIATCDEQFQTHPAYAKLGPQGIDLLRRLLRYEPGERLTAAQALEHPYF-SVEF 301          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CC2H1_TRYBB (Cell division control protein 2 homolog 1 OS=Trypanosoma brucei brucei GN=CRK1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 84/160 (52.50%), Postives = 102/160 (63.75%), Query Frame = -2
Query:  243 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWP---------GVTSLPDFKSAFPKWPSKELGT--VVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDVEF 689
            LADFGL RAFGIPV+ FT EVVTLWYR+P++LLGS  Y TPVD+WSVGCIFAEM    PLF G ++ D+L +IF+ LGTPN   WP          + S P+F+        ++  T      L P GIDLL  +L  +PS R+TA  ALEH YF  VEF
Sbjct:  143 LADFGLGRAFGIPVKKFTQEVVTLWYRSPDVLLGSTQYGTPVDIWSVGCIFAEMAIGAPLFTGKNDADQLLRIFQFLGTPNRQVWPSMDTYPNSSNMLSRPEFQQTLAATCEEQFQTNPAYAKLGPQGIDLLRWLLRYEPSERLTAAQALEHPYF-SVEF 301          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK11_MOUSE (Cell division protein kinase 11 OS=Mus musculus GN=Cdk11 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 79/151 (52.32%), Postives = 102/151 (67.55%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWP----SKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            + DFGLAR +G P++ +T  VVTLWYRAPE+LLG++ YST VD+WSVGCIF E++ Q+PLFPG S+ID++ KIF+ LGTP+E  WPG   LP  K   F ++P     K  G +   L   G DL+ K L   P RRI A   L+HEYFR+
Sbjct:  567 VGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSDIDQINKIFKDLGTPSEKIWPGYNDLPAVKKMTFSEYPYNNLRKRFGAL---LSDQGFDLMNKFLTYYPGRRINAEDGLKHEYFRE 714          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CD11B_HUMAN (Cell division protein kinase 11B OS=Homo sapiens GN=CDK11B PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 79/151 (52.32%), Postives = 103/151 (68.21%), Query Frame = -2
Query:  252 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWP----SKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRD 689
            + DFGLAR +G P++ +T  VVTLWYRAPE+LLG++ YST VD+WSVGCIF E++ Q+PLFPG SEID++ K+F+ LGTP+E  WPG + LP  K   F + P     K  G +   L   G DL+ K L   P RRI+A   L+HEYFR+
Sbjct:  578 VGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSEIDQINKVFKDLGTPSEKIWPGYSELPAVKKMTFSEHPYNNLRKRFGAL---LSDQGFDLMNKFLTYFPGRRISAEDGLKHEYFRE 725          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CKD18_RAT (Cell division protein kinase 18 OS=Rattus norvegicus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 74/148 (50.00%), Postives = 106/148 (71.62%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARA  +P +T+++EVVTLWYR P++LLGS  YSTP+D+W VGCI  EM   +PLFPG +  +EL  IFR+LGTP E++WPGVTS+ +F++  FP++  + L +    L+  GI+LL  +L  +   R++A +AL H YF+ +
Sbjct:  258 LADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLFPGSTVKEELHLIFRLLGTPTEESWPGVTSISEFRAYNFPRYLPQPLLSHAPRLDTEGINLLTSLLLYESKSRMSAEAALSHPYFQSL 405          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK18_MOUSE (Cell division protein kinase 18 OS=Mus musculus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 74/148 (50.00%), Postives = 106/148 (71.62%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARA  +P +T+++EVVTLWYR P++LLGS  YSTP+D+W VGCI  EM   +PLFPG +  +EL  IFR+LGTP E++WPGVTS+ +F++  FP++  + L +    L+  GI+LL  +L  +   R++A +AL H YF+ +
Sbjct:  258 LADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLFPGSTVKEELHLIFRLLGTPTEESWPGVTSISEFRAYNFPRYLPQPLLSHAPRLDTEGINLLSSLLLYESKSRMSAEAALNHPYFQSL 405          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CDK18_HUMAN (Cell division protein kinase 18 OS=Homo sapiens GN=CDK18 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 76/148 (51.35%), Postives = 103/148 (69.59%), Query Frame = -2
Query:  249 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKS-AFPKWPSKELGTVVRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYFRDV 689
            LADFGLARA  +P +T+++EVVTLWYR P++LLGS  YSTP+D+W VGCI  EM   RPLFPG +  +EL  IFR+LGTP E+TWPGVT+  +F++ +FP +  + L      L+  GI LL  +L  +   R++A +AL H YFR +
Sbjct:  279 LADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCIHYEMATGRPLFPGSTVKEELHLIFRLLGTPTEETWPGVTAFSEFRTYSFPCYLPQPLINHAPRLDTDGIHLLSSLLLYESKSRMSAEAALSHSYFRSL 426          
BLAST of CF835955 vs. ExPASy Swiss-Prot
Match: CRK1_LEIME (Cell division protein kinase 2 homolog CRK1 OS=Leishmania mexicana GN=CRK1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.517e-38
Identity = 84/156 (53.85%), Postives = 101/156 (64.74%), Query Frame = -2
Query:  258 LADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVT---------SLPDFKSAF-PKWPSKELGTV--VRNLEPAGIDLLFKMLCMDPSRRITARSALEHEYF 689
            L DFGL R+F IPVR FT+EVVTLWYR P++LLGS  Y  PVDVWSVGCIF+EM    PLF G ++ D+L +IFR LGTPN   WP +          S P+F   F P+W S  LG+V     L  AG+DLL ++L  +PS RITA  AL H YF
Sbjct:  143 LGDFGLGRSFAIPVRKFTNEVVTLWYRPPDVLLGSMQYGPPVDVWSVGCIFSEMATGTPLFAGKNDADQLMRIFRFLGTPNNRVWPSMNQYPNSNNMLSQPEFLQNFEPEW-SNVLGSVPGYEKLGCAGVDLLERLLRYEPSERITAADALNHPYF 297          
The following BLAST results are available for this feature:
BLAST of CF835955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK18_PONAB4.155e-3951.35Cell division protein kinase 18 OS=Pongo abelii GN... [more]
CDK17_RAT4.155e-3952.03Cell division protein kinase 17 OS=Rattus norvegic... [more]
CC2H1_TRYCO4.155e-3951.25Cell division control protein 2 homolog 1 OS=Trypa... [more]
CC2H1_TRYBB9.256e-3952.50Cell division control protein 2 homolog 1 OS=Trypa... [more]
CDK11_MOUSE1.209e-3852.32Cell division protein kinase 11 OS=Mus musculus GN... [more]
CD11B_HUMAN1.209e-3852.32Cell division protein kinase 11B OS=Homo sapiens G... [more]
CKD18_RAT2.062e-3850.00Cell division protein kinase 18 OS=Rattus norvegic... [more]
CDK18_MOUSE2.062e-3850.00Cell division protein kinase 18 OS=Mus musculus GN... [more]
CDK18_HUMAN2.062e-3851.35Cell division protein kinase 18 OS=Homo sapiens GN... [more]
CRK1_LEIME3.517e-3853.85Cell division protein kinase 2 homolog CRK1 OS=Lei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02C24_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835955 ID=CF835955; Name=CF835955; organism=Citrus sinensis; type=EST; length=690bp
TACATATCTCCTATTAAAAGAAAAACTGGCACAAACATTTATCCACCAGA
TCTAGAAAGCCGCGAATACACGATTACAAACTAGGCAAATCCAGAGATGA
CTGTAAAAAGCCATTCCATGTAGTAAGACTTTTCAGTAAAACTGCAAGTA
AAGACAGTCGGCAAATTTCGCAAACAATCAAAACCGAAGGCTTCACAATA
ATGTCAACACTCTAATAGCATATACAACAGATATTAGGGTACAAATTCGA
CGTCCCTGAAGTATTCATGTTCTAGAGCACTTCTGGCAGTAATTCTTCTG
CTTGGATCCATGCAGAGCATTTTAAAAAGGAGATCAATGCCAGCTGGCTC
AAGATTTCGAACAACAGTCCCCAACTCCTTAGAAGGCCATTTTGGAAAGG
CAGATTTAAAGTCAGGCAATGAAGTCACTCCAGGCCATGTGTCCTCATTA
GGTGTTCCCAAGACTCTGAAGATCTTGAATAACTCATCAATCTCAGAGTC
TCCTGGAAACAATGGCCGCTGGTTCACCATCTCAGCAAATATACATCCCA
CCGACCACACATCAACTGGAGTAGAGTAATGGCGAGATCCTAGTAATATT
TCAGGTGCTCTGTACCACAATGTCACCACCTCATGTGTAAATGTCCTAAC
AGGAATACCAAAAGCCCTGGCCAGTCCAAAATCTGCTAGC
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