CF835985

Overview
NameCF835985
Unique NameCF835985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRS7 (50S ribosomal protein L15 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rplO PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 65/155 (41.94%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  + A  F +G EV+   LK  G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:    2 KLHELKPAKGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNA--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STREM (50S ribosomal protein L15 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rplO PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 65/155 (41.94%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  + A  F +G EV+   LK  G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:    2 KLHELKPAKGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNA--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRE4 (50S ribosomal protein L15 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplO PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 65/155 (41.94%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RRIPK     G  +    +Y  VNL  + A  F +G EV+   LK  G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:    2 KLHELKPAKGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRIPK----RGFTNINTKEYALVNLDQLNA--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRGC (50S ribosomal protein L15 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rplO PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G ++    +Y  VNL  + A  F +G EV+   L   G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:    2 KLHELQPAAGSRKVRNRVGRGTSSGNGKTAGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFLNVNRKEYAIVNLDQLNA--FEDGAEVTPVVLVESGIV----KAEKSGVKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_MACCJ (50S ribosomal protein L15 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplO PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 62/155 (40.00%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ + P  G+          +A+G G + G G +GQK+RSG GVR GFEGGQ+PL+RR+PK     G  +     Y  VNL  +    F +G E++  +L   G+++      K  +K+LG+GELSKKL  KA  FS SAKE +E  G T  V+
Sbjct:    2 KLHEMKPVEGARKERNRVGRGMASGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRLPK----RGFTNINRKDYAIVNLDQLNR--FEDGTEITPASLIETGVVS----NEKSGIKVLGNGELSKKLTVKAHKFSASAKEAIEGKGGTTEVI 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_CLOTH (50S ribosomal protein L15 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplO PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 67/155 (43.23%), Postives = 86/155 (55.48%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L  L P PGS             G G + G G +GQ +RSG GVR GFEGGQMPLYRR+PK     G  +     Y  VN+  + A  F +G  V+ E LK KG+I    ++    + ILG+GEL KKL  KA  FS +A EK+EAAG  + V+
Sbjct:    2 KLFELQPAPGSKKLPKRKGRGHGTGNGKTAGRGHKGQNARSGGGVRPGFEGGQMPLYRRVPK----RGFTNIFSKVYTEVNVSALNA--FDDGTVVTQELLKEKGII----KKINDGVVILGNGELKKKLTVKAARFSKTAAEKIEAAGGKVEVI 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_LISW6 (50S ribosomal protein L15 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplO PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.394e-22
Identity = 64/149 (42.95%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            +L+ L P  GS            +G G + G G +GQK+RSG GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L   G+I    R  K  +KIL DG + KKL  KA  FS +AKE +EAAG
Sbjct:    2 KLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLIESGII----RNEKSGIKILSDGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_LISIN (50S ribosomal protein L15 OS=Listeria innocua GN=rplO PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.227e-21
Identity = 64/149 (42.95%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 632
            +L+ L P  GS            +G G + G G +GQK+RSG GVR GFEGGQ+PL+RRIPK     G  +    ++  VNL  +    F +G EV+ E L   G+I    R  K  +KIL DG + KKL  KA  FS +AKE +EAAG
Sbjct:    2 KLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPK----RGFTNINRKEFAIVNLDVLNR--FEDGTEVTPELLIETGII----RNEKSGIKILSDGNIEKKLTVKANKFSAAAKEAIEAAG 140          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRT2 (50S ribosomal protein L15 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplO PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.602e-21
Identity = 62/155 (40.00%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG G+R GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+   LK  G+I    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGVGLRPGFEGGQTPLFRRLPK----RGFTNINAKEYTLVNLEQLNV--FEDGTEVTPVVLKEAGII----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRT1 (50S ribosomal protein L15 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplO PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.602e-21
Identity = 62/155 (40.00%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG G+R GFEGGQ PL+RR+PK     G  +    +Y  VNL+ +    F +G EV+   LK  G+I    R  K  +K+LG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGVGLRPGFEGGQTPLFRRLPK----RGFTNINAKEYTLVNLEQLNV--FEDGTEVTPVVLKEAGII----RAEKSGVKVLGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146          
The following BLAST results are available for this feature:
BLAST of CF835985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_STRS73.229e-2241.9450S ribosomal protein L15 OS=Streptococcus equi su... [more]
RL15_STREM3.229e-2241.9450S ribosomal protein L15 OS=Streptococcus equi su... [more]
RL15_STRE43.229e-2241.9450S ribosomal protein L15 OS=Streptococcus equi su... [more]
RL15_STRGC7.193e-2240.6550S ribosomal protein L15 OS=Streptococcus gordoni... [more]
RL15_MACCJ7.193e-2240.0050S ribosomal protein L15 OS=Macrococcus caseolyti... [more]
RL15_CLOTH7.193e-2243.2350S ribosomal protein L15 OS=Clostridium thermocel... [more]
RL15_LISW69.394e-2242.9550S ribosomal protein L15 OS=Listeria welshimeri s... [more]
RL15_LISIN1.227e-2142.9550S ribosomal protein L15 OS=Listeria innocua GN=r... [more]
RL15_STRT21.602e-2140.0050S ribosomal protein L15 OS=Streptococcus thermop... [more]
RL15_STRT11.602e-2140.0050S ribosomal protein L15 OS=Streptococcus thermop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835985 ID=CF835985; Name=CF835985; organism=Citrus sinensis; type=EST; length=661bp
GCTTTCCATCAACTCCATTCAAGGGCAATGTCAAAACCCTAATGCCAAAA
CCCCCATCAAGCCTTTGCGTCCCTCTCAAAGTCCAACAAAGAAATAAACC
ACCCCAGCTCACTGTCTTAAACCAAGCTGCTTCGGCTTCTGCTTCAGCAA
CTGTTGGTTCGGGTCCCGTTACGAATGTACGGTTCCGGTTAAATAACCTG
GGCCCACAACCGGGTTCGAGAAAGAGAGGGAAGAGAAAGGGGAGAGGAAT
AGCAGCTGGGCAAGGTAACAGCTGTGGGTTTGGAATGAGAGGTCAGAAAT
CGAGGTCTGGTCCTGGCGTTAGAAAGGGTTTTGAAGGTGGTCAAATGCCT
CTTTATCGTCGAATTCCTAAGCTCCGTGGGATTGCCGGAGGTATGCATGC
TGGGTTACCTAAGTATGTCCCTGTTAACTTGAAAGACATAGAAGCAGCTG
GTTTTCTAGAGGGGGATGAAGTCTCACTAGAGACTTTGAAGAATAAGGGC
TTGATCAATCCCTCATGAAGAGAAAGGAAACTGCCTTTAAAGATTCTTGG
TGATGGAGAATTAAGCAAGAAGCTGAACTTCAAGGCTCGTGCCTTCTCTA
CATCAGCAAAGGAGAAGCTTGAAGCTGCAGGCTGTACCCTCACTGTCTTA
CCTGGCCGAAA
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