CF835985

Overview
NameCF835985
Unique NameCF835985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRZP (50S ribosomal protein L15 OS=Streptococcus pneumoniae (strain P1031) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 3 
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L   G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146
[Close]
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRZJ (50S ribosomal protein L15 OS=Streptococcus pneumoniae (strain JJA) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 3 
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L   G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146
[Close]
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRU0 (50S ribosomal protein L15 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 63/155 (40.65%), Postives = 86/155 (55.48%), Query Frame = 3 
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L    GS           ++G G + G G +GQKSRSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   LK  G++    R  K  +KILG+GEL+KKL  KA  FS SA+  + A G ++ V+
Sbjct:    2 KLHELKAAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKSRSGGGVRLGFEGGQTPLFRRMPK----RGFSNINTKEYALVNLDQLNV--FEDGTEVTPVVLKEAGIV----RAEKSGVKILGNGELTKKLTVKAAKFSKSAEAAITAKGGSIEVI 146
[Close]
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRR6 (50S ribosomal protein L15 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 3 
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L   G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146
[Close]
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRPS (50S ribosomal protein L15 OS=Streptococcus pneumoniae (strain CGSP14) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 3 
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L   G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146
[Close]
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRPN (50S ribosomal protein L15 OS=Streptococcus pneumoniae GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 3 
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L   G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146
[Close]
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRPJ (50S ribosomal protein L15 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 3 
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L   G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146
[Close]
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRPI (50S ribosomal protein L15 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 3 
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L   G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146
[Close]
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRP7 (50S ribosomal protein L15 OS=Streptococcus pneumoniae (strain 70585) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 3 
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L   G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146
[Close]
BLAST of CF835985 vs. ExPASy Swiss-Prot
Match: RL15_STRP4 (50S ribosomal protein L15 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rplO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 3 
Query:  186 RLNNLGPQPGSXXXXXXXXXXIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKNKGLINPS*RERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 650
            +L+ L P  GS           ++G G + G G +GQK+RSG GVR GFEGGQ PL+RR+PK     G  +    +Y  VNL  +    F +G EV+   L   G++    +  K  +KILG+GEL+KKL  KA  FS SA+E + A G ++ V+
Sbjct:    2 KLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRLPK----RGFTNINAKEYAIVNLDQLNV--FEDGAEVTPVVLIEAGIV----KAEKSGIKILGNGELTKKLTVKAAKFSKSAEEAITAKGGSVEVI 146
The following BLAST results are available for this feature:
BLAST of CF835985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL15_STRZP7.953e-2140.0050S ribosomal protein L15 OS=Streptococcus pneumon... [more]
RL15_STRZJ7.953e-2140.0050S ribosomal protein L15 OS=Streptococcus pneumon... [more]
RL15_STRU07.953e-2140.6550S ribosomal protein L15 OS=Streptococcus uberis ... [more]
RL15_STRR67.953e-2140.0050S ribosomal protein L15 OS=Streptococcus pneumon... [more]
RL15_STRPS7.953e-2140.0050S ribosomal protein L15 OS=Streptococcus pneumon... [more]
RL15_STRPN7.953e-2140.0050S ribosomal protein L15 OS=Streptococcus pneumon... [more]
RL15_STRPJ7.953e-2140.0050S ribosomal protein L15 OS=Streptococcus pneumon... [more]
RL15_STRPI7.953e-2140.0050S ribosomal protein L15 OS=Streptococcus pneumon... [more]
RL15_STRP77.953e-2140.0050S ribosomal protein L15 OS=Streptococcus pneumon... [more]
RL15_STRP47.953e-2140.0050S ribosomal protein L15 OS=Streptococcus pneumon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02D20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835985 ID=CF835985; Name=CF835985; organism=Citrus sinensis; type=EST; length=661bp
GCTTTCCATCAACTCCATTCAAGGGCAATGTCAAAACCCTAATGCCAAAA
CCCCCATCAAGCCTTTGCGTCCCTCTCAAAGTCCAACAAAGAAATAAACC
ACCCCAGCTCACTGTCTTAAACCAAGCTGCTTCGGCTTCTGCTTCAGCAA
CTGTTGGTTCGGGTCCCGTTACGAATGTACGGTTCCGGTTAAATAACCTG
GGCCCACAACCGGGTTCGAGAAAGAGAGGGAAGAGAAAGGGGAGAGGAAT
AGCAGCTGGGCAAGGTAACAGCTGTGGGTTTGGAATGAGAGGTCAGAAAT
CGAGGTCTGGTCCTGGCGTTAGAAAGGGTTTTGAAGGTGGTCAAATGCCT
CTTTATCGTCGAATTCCTAAGCTCCGTGGGATTGCCGGAGGTATGCATGC
TGGGTTACCTAAGTATGTCCCTGTTAACTTGAAAGACATAGAAGCAGCTG
GTTTTCTAGAGGGGGATGAAGTCTCACTAGAGACTTTGAAGAATAAGGGC
TTGATCAATCCCTCATGAAGAGAAAGGAAACTGCCTTTAAAGATTCTTGG
TGATGGAGAATTAAGCAAGAAGCTGAACTTCAAGGCTCGTGCCTTCTCTA
CATCAGCAAAGGAGAAGCTTGAAGCTGCAGGCTGTACCCTCACTGTCTTA
CCTGGCCGAAA
back to top