CF835996
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 7.579e-32 Identity = 66/127 (51.97%), Postives = 92/127 (72.44%), Query Frame = 2 Query: 482 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD--GSR 856 SLY+GDL +VT++ L++ S G ++S+RVCRD++TRRSLGYAY+N+ PADA RALD +NF + + IRI DP +R++G + I+NLD S+ +KAL DTFS+FG ILSC++ D GSR Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR 138
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 9.899e-32 Identity = 67/136 (49.26%), Postives = 96/136 (70.59%), Query Frame = 2 Query: 455 ASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD--GSR 856 A+G SLY+GDL +VT++ L++ S G ++S+RVCRD++TRRSL YAY+N+ PADA RALD +NF + + IRI DP +R++G + I+NLD+S+ +KAL DTFS+FG+ILSC++ D GSR Sbjct: 3 ATGAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR 138
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 4.913e-31 Identity = 72/138 (52.17%), Postives = 97/138 (70.29%), Query Frame = 2 Query: 446 AAGASGNRLLAT----SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 AA A+ L T SLYVGDLD +V +S L DL + V V ++RVCRDL T RSLGYAYVN+ +P DA+RA++ LN+ P+ ++ IRI + DPS R +G + I+NLD S+ +KAL +TFSSFG+ILSC++A D Sbjct: 30 AAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD 166
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.429e-30 Identity = 67/136 (49.26%), Postives = 95/136 (69.85%), Query Frame = 2 Query: 440 GEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 GE AG G A SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD T++SLGYAYVN+ AD +RA++ LN++ ++ + RI DPS+R G I I+NL ++ +KAL DTFS+FG ILSC++ATD Sbjct: 46 GEGAGEEGEEASA-SLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATD 180
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.159e-30 Identity = 65/142 (45.77%), Postives = 96/142 (67.61%), Query Frame = 2 Query: 422 QISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 Q + GE++G + N + SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD +++SLGYAYVNY D +A++ LN+ P+ + RI DPS R +G I I+NL ++ +KAL DTFS+FG ILSC++ATD Sbjct: 36 QSAEEQGESSGVAEN---SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD 174
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 7.094e-30 Identity = 66/142 (46.48%), Postives = 95/142 (66.90%), Query Frame = 2 Query: 440 GEAAGASGNRLLAT-SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862 GE S N +T SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD +++SLGYAYVNY D +A++ LN++P+ + RI DPS R +G I I+NL ++ +KAL DTFS+FG ILSC++ATD +S Sbjct: 38 GEEGADSANVAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQS 179
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 7.094e-30 Identity = 70/150 (46.67%), Postives = 99/150 (66.00%), Query Frame = 2 Query: 413 LQGQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862 LQ + G N E + + ++ SLYVGDLD +V+++ L+D+ S +G V S+RVCRD T+ SLGYAYVN+ D A A++ LNFTP+ K RI DPS+R+ G+ I I+NL + +KAL DTFS FG+ILS ++ATD + +S Sbjct: 17 LQDKQEGTNEE----NQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKS 162
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 9.265e-30 Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 2 Query: 482 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 SLYVGDL VT++ L++ S G ++S+R+CRD TRRSLGYAYVNY P DA RAL+ LNF + + +RI DPS+R++G + I+NL K++ +KAL + FS+FG+ILSC++A D Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACD 124
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.064e-29 Identity = 65/141 (46.10%), Postives = 96/141 (68.09%), Query Frame = 2 Query: 440 GEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862 GE++G + N + SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD +++SLGYAYVNY D +A++ LN+TP+ + RI DPS R +G I I+NL ++ +KAL DTFS+FG ILS ++ATD +S Sbjct: 57 GESSGIAEN---SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQS 194
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 1.024e-28 Identity = 63/140 (45.00%), Postives = 94/140 (67.14%), Query Frame = 2 Query: 428 SGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847 SG EAA ++ + SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD T++SLGYAYVN+ D +A++ LN++ + + RI DPS+R G I I+NL ++ +KAL DTF++FG ILSC++ATD Sbjct: 34 SGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD 173 The following BLAST results are available for this feature:
BLAST of CF835996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835996 ID=CF835996; Name=CF835996; organism=Citrus sinensis; type=EST; length=892bpback to top |