CF835996

Overview
NameCF835996
Unique NameCF835996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.579e-32
Identity = 66/127 (51.97%), Postives = 92/127 (72.44%), Query Frame = 2
Query:  482 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD--GSR 856
            SLY+GDL  +VT++ L++  S  G ++S+RVCRD++TRRSLGYAY+N+  PADA RALD +NF  +  + IRI     DP +R++G   + I+NLD S+ +KAL DTFS+FG ILSC++  D  GSR
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR 138          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.899e-32
Identity = 67/136 (49.26%), Postives = 96/136 (70.59%), Query Frame = 2
Query:  455 ASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD--GSR 856
            A+G      SLY+GDL  +VT++ L++  S  G ++S+RVCRD++TRRSL YAY+N+  PADA RALD +NF  +  + IRI     DP +R++G   + I+NLD+S+ +KAL DTFS+FG+ILSC++  D  GSR
Sbjct:    3 ATGAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR 138          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.913e-31
Identity = 72/138 (52.17%), Postives = 97/138 (70.29%), Query Frame = 2
Query:  446 AAGASGNRLLAT----SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            AA A+    L T    SLYVGDLD +V +S L DL + V  V ++RVCRDL T RSLGYAYVN+ +P DA+RA++ LN+ P+ ++ IRI   + DPS R +G   + I+NLD S+ +KAL +TFSSFG+ILSC++A D
Sbjct:   30 AAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD 166          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.429e-30
Identity = 67/136 (49.26%), Postives = 95/136 (69.85%), Query Frame = 2
Query:  440 GEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            GE AG  G    A SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD  T++SLGYAYVN+   AD +RA++ LN++ ++ +  RI     DPS+R  G   I I+NL  ++ +KAL DTFS+FG ILSC++ATD
Sbjct:   46 GEGAGEEGEEASA-SLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATD 180          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.159e-30
Identity = 65/142 (45.77%), Postives = 96/142 (67.61%), Query Frame = 2
Query:  422 QISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            Q +   GE++G + N   + SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD  +++SLGYAYVNY    D  +A++ LN+ P+  +  RI     DPS R +G   I I+NL  ++ +KAL DTFS+FG ILSC++ATD
Sbjct:   36 QSAEEQGESSGVAEN---SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD 174          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.094e-30
Identity = 66/142 (46.48%), Postives = 95/142 (66.90%), Query Frame = 2
Query:  440 GEAAGASGNRLLAT-SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862
            GE    S N   +T SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD  +++SLGYAYVNY    D  +A++ LN++P+  +  RI     DPS R +G   I I+NL  ++ +KAL DTFS+FG ILSC++ATD   +S
Sbjct:   38 GEEGADSANVAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQS 179          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.094e-30
Identity = 70/150 (46.67%), Postives = 99/150 (66.00%), Query Frame = 2
Query:  413 LQGQISGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862
            LQ +  G N E    + +  ++ SLYVGDLD +V+++ L+D+ S +G V S+RVCRD  T+ SLGYAYVN+ D   A  A++ LNFTP+  K  RI     DPS+R+ G+  I I+NL   + +KAL DTFS FG+ILS ++ATD + +S
Sbjct:   17 LQDKQEGTNEE----NQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKS 162          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.265e-30
Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 2
Query:  482 SLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            SLYVGDL   VT++ L++  S  G ++S+R+CRD  TRRSLGYAYVNY  P DA RAL+ LNF  +  + +RI     DPS+R++G   + I+NL K++ +KAL + FS+FG+ILSC++A D
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACD 124          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.064e-29
Identity = 65/141 (46.10%), Postives = 96/141 (68.09%), Query Frame = 2
Query:  440 GEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATDGSRES 862
            GE++G + N   + SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD  +++SLGYAYVNY    D  +A++ LN+TP+  +  RI     DPS R +G   I I+NL  ++ +KAL DTFS+FG ILS ++ATD   +S
Sbjct:   57 GESSGIAEN---SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQS 194          
BLAST of CF835996 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.024e-28
Identity = 63/140 (45.00%), Postives = 94/140 (67.14%), Query Frame = 2
Query:  428 SGRNGEAAGASGNRLLATSLYVGDLDFNVTDSQLFDLLSLVGQVVSVRVCRDLSTRRSLGYAYVNYGDPADAARALDVLNFTPLNNKSIRIT*CHGDPSIRETGSATILIENLDKSVHHKALRDTFSSFGSILSCEIATD 847
            SG   EAA ++     + SLYVG+L+ +V ++ LF++ S +GQV S+RVCRD  T++SLGYAYVN+    D  +A++ LN++ +  +  RI     DPS+R  G   I I+NL  ++ +KAL DTF++FG ILSC++ATD
Sbjct:   34 SGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD 173          
The following BLAST results are available for this feature:
BLAST of CF835996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
EPABB_XENLA7.579e-3251.97Embryonic polyadenylate-binding protein B OS=Xenop... [more]
EPABA_XENLA9.899e-3249.26Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP5_ARATH4.913e-3152.17Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP_PICGU1.429e-3049.26Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANAL4.159e-3045.77Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICST7.094e-3046.48Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANGA7.094e-3046.67Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1M_HUMAN9.265e-3050.82Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
PABP_LODEL2.064e-2946.10Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DEBHA1.024e-2845.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835996 ID=CF835996; Name=CF835996; organism=Citrus sinensis; type=EST; length=892bp
TTTTTTTATAGAAAATACAGGGGTGCCAATAGCGCCACTCTTTCTATTTA
TATCATCAATTGATAACCAGTAATGGGCTTAGATCCAATATAAATAAATA
TTTGAATTGTTCTGCCCAAAACCCAAATACTTTGGCTGAACCGTAAAATA
ATGAAACCATGGGGTGCCATGGGATAGAAACCAAAAACCTTAAATCACAT
ATTCTGTTGGACTTAAATGCAACAAAAGTCCAAACTTTGACATAAAAAAT
AAATTACTAAGACCATAGGGTGACTAATGAAAAGATCCAAAAGAAACCCT
CTCTCTCTCTTTGCTTTTCGCTGCCAATTCCAGAGGCAATTCGTGGCTGC
TGTTTTTTCTGCTTCTTGCGGCTTCAACCTGTTCTTTGTTTTCTTGAGCT
CTTTGATATCAACTTCAAGGGCAAATCTCGGGGCGAAACGGAGAGGCGGC
GGGTGCGTCAGGGAACCGGTTACTAGCGACGTCCCTTTATGTTGGCGATC
TCGATTTCAACGTAACCGATTCGCAGCTTTTTGATCTGTTGAGCCTGGTT
GGTCAAGTCGTGTCGGTTAGGGTTTGTCGAGACCTGAGCACCAGGCGCTC
TCTCGGCTACGCCTACGTTAACTACGGCGACCCTGCAGATGCGGCGAGGG
CACTGGATGTTCTGAACTTCACTCCACTTAATAATAAGTCCATCAGAATC
ACGTAATGTCATGGGGATCCTAGTATCCGAGAAACCGGTTCTGCGACCAT
ACTTATCGAGAATCTGGACAAGTCTGTTCATCACAAAGCATTACGCGATA
CATTTTCTTCATTTGGGAGCATTCTTTCTTGTGAGATAGCTACTGATGGT
TCTCGCGAGTCCCCAGCACTACTAGAAAAATGATCTTTTGCC
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