CF836002
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 5.521e-15 Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = -2 Query: 176 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFE-CKEQEVLCD-ITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSLKKRSEKRK 601 HRFK+G A IL+ATDVASRGLDIPTV+LV+NYDIP D+ +S V + VD I IE + K+++ E + +V+ D + + +R A M + + F EK K K ++ A +G++ K+K Sbjct: 297 HRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAEKDVDRILAIEERINKKMDLIEDISDNKVIKDSLNKTSVAKREAFMDMDRENFGEKRKINKSKR---QANEGTISIHESKKK 437
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX49_DICDI (Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium discoideum GN=ddx49 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14 Identity = 44/122 (36.07%), Postives = 66/122 (54.10%), Query Frame = -2 Query: 230 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQK 595 FKSG+ +L+ATDVASRGLDIP V +V+NY + DY +SF+T + V LI IE ++ KQLE ++ + EV + R++ + L + F K KER+ ++ Sbjct: 291 FKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEEIIKKQLELYKTDDDEVFRHLKEASTARKIVEIHLDEIEFGVKQKERRTER 412
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_PICST (ATP-dependent RNA helicase DBP8 OS=Pichia stipitis GN=DBP8 PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14 Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = -2 Query: 170 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEF-ECKEQEVLCD-ITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSLKKRSEKRKTS 598 RFK+G A IL+ATDVASRGLDIP+V+LV+N+DIP P D+ V+ + + +D I IE + K++E E + V+ D +T +R + M++ + F EK K +K++ + +K + EK K S Sbjct: 298 RFKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTIIAEKDIDRIASIEERINKKMELLEEVTDDSVITDSLTATSVAKRESLMEMDKENFGEKRKINRKKRGLETEKIRVVKSKKEKSKKS 442
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_CRYNE (ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans GN=DBP8 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14 Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = -2 Query: 230 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*E-----KAKERKKQK 598 RF++ + +L+ TDV SRGLDIP V +V+N+D PR DY V+ +T+ +L+ IE V +LEE + E +VL + +V RR+A M++ D GF E KAK+ K+ K Sbjct: 483 RFRAHEVPVLVTTDVGSRGLDIPEVAMVINWDCPRRSDDYVHRVGRTARAGRGGVAVTIITERDTELVKIIEDEVNVRLEELKLDEDKVLEGLNKVSLARRMATMEMHDSGFGERQATNKAKQIKRMK 610
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14 Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = -2 Query: 230 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLM-DDGF*EKAKERKKQK 601 ++FKSG IL+ATDVASRGLDIP VDLV+NYDIP Y V+ V+Q ++L IE +GK+L+ + + + V+ RV + R A ++ +DG +++K KK++ Sbjct: 347 NKFKSGSRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRIEGALGKKLDSYPLESEAVMLFSERVAEASRAAIQEMKGEDGTKKRSKFDKKRR 471
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14 Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = -2 Query: 230 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRR--VAPMKLMDDGF*EKAKERKKQK 598 +F+S IL+ATDVA+RGLDIP+VD+VLN+D+P Y +SFVTQ V++ IE +GK+L+E+E ++ EV+ RV + +R + MK D+ KAK+ K K Sbjct: 337 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKDEVMVLAERVGEAQRQAIVEMKNFDEKRGTKAKKFGKGK 461
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14 Identity = 52/143 (36.36%), Postives = 78/143 (54.55%), Query Frame = -2 Query: 176 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSL--KKRSEKRK 598 +FKS IL+ATDVASRGLDIPTV +V+N++ P P Y ++ VTQ + L+H IE + +QL E +E EVL +T+V RR +KL F EK + K++++ + + L K+++E K Sbjct: 293 KFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIKQQLAELVVEEAEVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQMILEGKDPDLEAKRKAELAK 435
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14 Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = -2 Query: 230 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRR--VAPMKLMDDGF*EKAKERKKQK 598 +F+S IL+ATDVA+RGLDIP+VD+VLN+D+P Y +SFVTQ V++ IE +GK+L+E+E ++ EV+ RV + +R + MK D+ KAK+ K K Sbjct: 337 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKDEVMVLAERVGEAQRQAIMEMKNFDEKRGTKAKKFGKGK 461
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_CANAL (ATP-dependent RNA helicase DBP8 OS=Candida albicans GN=DBP8 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14 Identity = 51/144 (35.42%), Postives = 78/144 (54.17%), Query Frame = -2 Query: 179 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFE-CKEQEVLCD-ITRVYKGRRVAPMKLMDDGF*EKAK-ERKKQKL*MLAEKGSLKKRSEKR 601 HRFK+G A IL+ATDVASRGLDIPTV+LV+N+DIP P D+ VS + + +D I IE + K++E E + V+ + ++ +R + M++ + F E+ K RKK L + + K + K+ Sbjct: 297 HRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEERINKKMELLEDVNDDNVIKESLSATSVAKRESLMEMDKENFGERKKINRKKHGLDKVKPERVTKPKKSKK 440
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 2.740e-14 Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = -2 Query: 272 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMD 601 ++F++ +L+ATDVA+RGLDIP VD VLNYD+P+ Y SFVTQ V+L IE +GK++EE++ ++ EV+ RV +RVA + + D Sbjct: 310 NKFRARSRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIEDALGKKVEEYKPEKDEVMIFAERVNDAQRVAALTMRD 419 The following BLAST results are available for this feature:
BLAST of CF836002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 67
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836002 ID=CF836002; Name=CF836002; organism=Citrus sinensis; type=EST; length=602bpback to top |