CF836002

Overview
NameCF836002
Unique NameCF836002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.521e-15
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = -2
Query:  176 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFE-CKEQEVLCD-ITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSLKKRSEKRK 601
            HRFK+G A IL+ATDVASRGLDIPTV+LV+NYDIP    D+                +S V +  VD I  IE  + K+++  E   + +V+ D + +    +R A M +  + F EK K  K ++    A +G++     K+K
Sbjct:  297 HRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAEKDVDRILAIEERINKKMDLIEDISDNKVIKDSLNKTSVAKREAFMDMDRENFGEKRKINKSKR---QANEGTISIHESKKK 437          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX49_DICDI (Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium discoideum GN=ddx49 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 44/122 (36.07%), Postives = 66/122 (54.10%), Query Frame = -2
Query:  230 FKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQK 595
            FKSG+  +L+ATDVASRGLDIP V +V+NY +     DY                +SF+T + V LI  IE ++ KQLE ++  + EV   +      R++  + L +  F  K KER+ ++
Sbjct:  291 FKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEEIIKKQLELYKTDDDEVFRHLKEASTARKIVEIHLDEIEFGVKQKERRTER 412          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_PICST (ATP-dependent RNA helicase DBP8 OS=Pichia stipitis GN=DBP8 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = -2
Query:  170 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEF-ECKEQEVLCD-ITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSLKKRSEKRKTS 598
            RFK+G A IL+ATDVASRGLDIP+V+LV+N+DIP  P D+                V+ + +  +D I  IE  + K++E   E  +  V+ D +T     +R + M++  + F EK K  +K++     +   +K + EK K S
Sbjct:  298 RFKAGAARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTIIAEKDIDRIASIEERINKKMELLEEVTDDSVITDSLTATSVAKRESLMEMDKENFGEKRKINRKKRGLETEKIRVVKSKKEKSKKS 442          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_CRYNE (ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans GN=DBP8 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = -2
Query:  230 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*E-----KAKERKKQK 598
            RF++ +  +L+ TDV SRGLDIP V +V+N+D PR   DY                V+ +T+   +L+  IE  V  +LEE +  E +VL  + +V   RR+A M++ D GF E     KAK+ K+ K
Sbjct:  483 RFRAHEVPVLVTTDVGSRGLDIPEVAMVINWDCPRRSDDYVHRVGRTARAGRGGVAVTIITERDTELVKIIEDEVNVRLEELKLDEDKVLEGLNKVSLARRMATMEMHDSGFGERQATNKAKQIKRMK 610          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = -2
Query:  230 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLM-DDGF*EKAKERKKQK 601
            ++FKSG   IL+ATDVASRGLDIP VDLV+NYDIP     Y                V+ V+Q  ++L   IE  +GK+L+ +  + + V+    RV +  R A  ++  +DG  +++K  KK++
Sbjct:  347 NKFKSGSRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLRIEGALGKKLDSYPLESEAVMLFSERVAEASRAAIQEMKGEDGTKKRSKFDKKRR 471          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  230 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRR--VAPMKLMDDGF*EKAKERKKQK 598
            +F+S    IL+ATDVA+RGLDIP+VD+VLN+D+P     Y                +SFVTQ  V++   IE  +GK+L+E+E ++ EV+    RV + +R  +  MK  D+    KAK+  K K
Sbjct:  337 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKDEVMVLAERVGEAQRQAIVEMKNFDEKRGTKAKKFGKGK 461          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 52/143 (36.36%), Postives = 78/143 (54.55%), Query Frame = -2
Query:  176 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMDDGF*EKAKERKKQKL*MLAEKGSL--KKRSEKRK 598
            +FKS    IL+ATDVASRGLDIPTV +V+N++ P  P  Y                ++ VTQ  + L+H IE  + +QL E   +E EVL  +T+V   RR   +KL    F EK +  K++++ +  +   L  K+++E  K
Sbjct:  293 KFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIKQQLAELVVEEAEVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQMILEGKDPDLEAKRKAELAK 435          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  230 RFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRR--VAPMKLMDDGF*EKAKERKKQK 598
            +F+S    IL+ATDVA+RGLDIP+VD+VLN+D+P     Y                +SFVTQ  V++   IE  +GK+L+E+E ++ EV+    RV + +R  +  MK  D+    KAK+  K K
Sbjct:  337 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKDEVMVLAERVGEAQRQAIMEMKNFDEKRGTKAKKFGKGK 461          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: DBP8_CANAL (ATP-dependent RNA helicase DBP8 OS=Candida albicans GN=DBP8 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 51/144 (35.42%), Postives = 78/144 (54.17%), Query Frame = -2
Query:  179 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFE-CKEQEVLCD-ITRVYKGRRVAPMKLMDDGF*EKAK-ERKKQKL*MLAEKGSLKKRSEKR 601
            HRFK+G A IL+ATDVASRGLDIPTV+LV+N+DIP  P D+                VS + +  +D I  IE  + K++E  E   +  V+ + ++     +R + M++  + F E+ K  RKK  L  +  +   K +  K+
Sbjct:  297 HRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEERINKKMELLEDVNDDNVIKESLSATSVAKRESLMEMDKENFGERKKINRKKHGLDKVKPERVTKPKKSKK 440          
BLAST of CF836002 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.740e-14
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = -2
Query:  272 HRFKSGQATILLATDVASRGLDIPTVDLVLNYDIPRYPGDYXXXXXXXXXXXXXXXXVSFVTQNGVDLIHEIEAVVGKQLEEFECKEQEVLCDITRVYKGRRVAPMKLMD 601
            ++F++    +L+ATDVA+RGLDIP VD VLNYD+P+    Y                 SFVTQ  V+L   IE  +GK++EE++ ++ EV+    RV   +RVA + + D
Sbjct:  310 NKFRARSRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIEDALGKKVEEYKPEKDEVMIFAERVNDAQRVAALTMRD 419          
The following BLAST results are available for this feature:
BLAST of CF836002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
DBP8_DEBHA5.521e-1536.81ATP-dependent RNA helicase DBP8 OS=Debaryomyces ha... [more]
DDX49_DICDI1.230e-1436.07Probable ATP-dependent RNA helicase ddx49 OS=Dicty... [more]
DBP8_PICST1.230e-1435.17ATP-dependent RNA helicase DBP8 OS=Pichia stipitis... [more]
DBP8_CRYNE1.230e-1436.72ATP-dependent RNA helicase DBP8 OS=Cryptococcus ne... [more]
RRP3_YARLI1.606e-1437.60ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipol... [more]
RRP3_NEOFI1.606e-1439.20ATP-dependent rRNA helicase rrp3 OS=Neosartorya fi... [more]
DDX49_MOUSE1.606e-1436.36Probable ATP-dependent RNA helicase DDX49 OS=Mus m... [more]
RRP3_ASPFU2.098e-1439.20ATP-dependent rRNA helicase rrp3 OS=Aspergillus fu... [more]
DBP8_CANAL2.098e-1435.42ATP-dependent RNA helicase DBP8 OS=Candida albican... [more]
RRP3_ASPTN2.740e-1439.09ATP-dependent rRNA helicase rrp3 OS=Aspergillus te... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836002 ID=CF836002; Name=CF836002; organism=Citrus sinensis; type=EST; length=602bp
AAACTACAATGCTCAGCAAATCCCTAAATAAATATCATTTTCGGATATCA
TCATCTCTAGATGATAGAGCGTATAATTTGAGTTGTATTACAAGCAAGCC
ACTGGACAAAATGCAGCTTGACAGCACACAACCAGAGGAGAGAATATTTA
CCTTCGCTGACTACTCACCAGATGTCTTTCTCTTTTCACTTCGCTTCTTC
AATGATCCTTTTTCTGCTAACATTTACAGTTTCTGCTTTTTGCGTTCTTT
TGCCTTTTCCTAAAAGCCATCATCCATCAACTTCATTGGCGCCACACGTC
TACCCTTGTACACCCTCGTAATATCACAAAGAACCTCTTGCTCTTTACAT
TCAAATTCTTCTAGCTGTTTCCCAACAACGGCTTCTATTTCATGAATGAG
ATCTACGCCATTTTGGGTAACAAAGCTAACAGCCAAGCCACCTCTGCCTG
CTCTTGCAGTACGGCCCACGCGGTGAACATAATCTCCCGGATATCTTGGA
ATATCATAGTTTAGAACAAGATCAACTGTGGGAATATCTAAACCGCGGCT
AGCAACATCAGTCGCAAGTAATATAGTAGCTTGTCCTGATTTGAACCGAT
GA
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