CF836020

Overview
NameCF836020
Unique NameCF836020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.875e-18
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 2
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTI L  E S TI+NVKAKI DKEGIPPDQQRLIF+GK LE+GRTL
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTL 56          
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.247e-17
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 2
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTG TI L  E S TI+NVKAKI DKEGIPPDQQRLIF+ K LE+GRTL
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTL 56          
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.327e-14
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 2
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIFVK+LTGKTIT+  E   T+  VK KI DKEG+P DQQRLI++GK LED +TL
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTL 56          
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.250e-13
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   26 MQIFVKSLTGKTITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            MQIF+K+LTGKTIT   E + T+ ++K KI DKEG+P DQQRLIF+GK LED +T+
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTM 56          
BLAST of CF836020 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.632e-13
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 2
Query:   59 TITL*AESSHTIDNVKAKIHDKEGIPPDQQRLIFSGKHLEDGRTL 193
            TITL  E S TI+NVKAKI DKEGIPPDQQRLIF+GK LEDGRTL
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 45          
The following BLAST results are available for this feature:
BLAST of CF836020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBIQ_LEIMA2.875e-1880.36Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA9.247e-1776.79Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP7.327e-1466.07Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC1.250e-1362.50Ubiquitin-like protein OS=Autographa californica n... [more]
UBIQ_LUMTE1.632e-1382.22Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02E15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836020 ID=CF836020; Name=CF836020; organism=Citrus sinensis; type=EST; length=194bp
AGGCTCCACGTCTCAGCCTTCCAACATGCAGATCTTTGTGAAAAGTTTGA
CCGGCAAGACCATCACTCTCTAGGCGGAGAGCTCCCACACCATCGACAAC
GTCAAGGCTAAGATCCATGACAAGGAAGGGATTCCACCGGACCAGCAACG
GCTGATCTTCTCCGGAAAGCATCTCGAGGACGGGCGCACCTTGG
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