CF836037

Overview
NameCF836037
Unique NameCF836037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_SALA4 (L-lactate dehydrogenase [cytochrome] OS=Salmonella agona (strain SL483) GN=lldD PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 73/255 (28.63%), Postives = 122/255 (47.84%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_CITK8 (L-lactate dehydrogenase [cytochrome] OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=lldD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 74/255 (29.02%), Postives = 121/255 (47.45%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  L+ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYIDGGAYAEYTLRRNVEDLSEVALRQRVLKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAALRRYWQAATHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_XANP2 (L-lactate dehydrogenase [cytochrome] OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lldD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 74/252 (29.37%), Postives = 116/252 (46.03%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP-------PHLTLKNYEGLYIGKMDKTDDSGLAS--------------YVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I++  +Y   A+ +LP  ++ Y   GA  + TL+ N    S +  R R+L+ V ++D++TT+L   +SMP+ +AP     M    GE          G   TLS+ +  S+EEV S      +FQLYV KDR      ++RA  AG + +  TVD P  G R  D  +    P           L  +    +G M    D G  S              ++ N  D S+ WKD++W++     P+++KG+L
Sbjct:    3 ISSSSDYREAARRRLPPFLFHYIDGGAYAEATLRRNVEDLSDLALRQRVLKSVGEVDLSTTLLKQQLSMPVGLAPVGLTGMYARRGEVQAAQAATQKGIPFTLSTVSVCSIEEVQSQVGKPIWFQLYVLKDRGFMKNALERAWAAGIRTLVFTVDMPVPGARYRDAHSGMSGPNAAFRRMVQAVLHPFWAYDVGLMGTPHDLGNVSAYRKEKTSLEDYVGWLGNNFDPSIGWKDLEWIREFWKGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_SALPC (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi C (strain RKS4594) GN=lldD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 73/255 (28.63%), Postives = 122/255 (47.84%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGLL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ESCF3 (L-lactate dehydrogenase [cytochrome] OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=lldD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 73/255 (28.63%), Postives = 122/255 (47.84%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAGAADAHGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_PSEMY (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas mendocina (strain ymp) GN=lldD PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.833e-24
Identity = 74/247 (29.96%), Postives = 118/247 (47.77%), Query Frame = 3
Query:   45 EYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            +Y A A+ KLP  ++ Y   GA  + TL+ N    S I  R R+L+++S++D++T + G  +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D  +    P     +  + +        +G M K  D           +GLA Y+       D S++WKD++W++     P+++KG+L
Sbjct:    8 DYRAAAERKLPPFLFHYADGGAYAEHTLRRNVADLSNIELRQRVLKNMSELDLSTELFGEKMSMPVGLAPVGLTGMYARRGEVQAAKAAAAKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNGPLRRVLQAMTHPQWAWDVGVMGKPHDLGNISAYRGNPTGLADYIGWLGANFDPSISWKDLEWIRDFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_SALNS (L-lactate dehydrogenase [cytochrome] OS=Salmonella newport (strain SL254) GN=lldD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.394e-24
Identity = 72/255 (28.24%), Postives = 121/255 (47.45%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S++  R R+L+++S + + T +    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETPLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ALCFA (L-lactate dehydrogenase [cytochrome] OS=Alcaligenes faecalis GN=lldD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.394e-24
Identity = 72/255 (28.24%), Postives = 121/255 (47.45%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYE------------GL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I++  +Y   A+++LP  ++ Y   GA  + TL+ N +  + +  R R+L+D+S++D +  + G  +SMP+ ++P     M    GE          G   T+SS +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  L+ Y             GL            Y+GK    +D     Y+    D S++WKD++W++     P+L+KG+L
Sbjct:    3 ISSSTDYRRAAQKRLPPFLFHYIDGGAYAEHTLRRNVDDLAEVALRQRVLKDMSQLDTSIDLFGEKLSMPVALSPVGLTGMYARRGEVQAARAADARGIPFTMSSVSVCPIEEVAPRLSRPMWFQLYVLKDRGFMRNALERAQAAGCSTLVFTVDMPVPGARYRDAHSG-MSGPNAALRRYAQAVMHPRWAWDVGLLGRPHDLGNISRYLGKPTGLED--YMGYLGANFDPSISWKDLEWIREFWKGPMLIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_PSEE4 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas entomophila (strain L48) GN=lldD PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.127e-24
Identity = 71/247 (28.74%), Postives = 118/247 (47.77%), Query Frame = 3
Query:   45 EYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYE-------GLYIGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            +Y A A+ KLP  ++ Y   GA  + TL+ N +  + I  R R+L+++S + + T +    +SMP+ +AP     M    GE          G   T+S+ +   +EEV+       +FQLYV KDR      ++RA+ AG K +  TVD P  G R  D  +    P     + ++        L +G + +  D           +GLA Y+    N  D S++WKD++W++     P+++KG+L
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLASIALRQRVLKNMSDLSLETRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGPNAPLRRVWQAMTHPQWALDVGLLGRPHDLGNISKYRGNPTGLADYIGWLGNNFDPSISWKDLEWIREFWDGPMIIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 72/255 (28.24%), Postives = 119/255 (46.67%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL 254          
The following BLAST results are available for this feature:
BLAST of CF836037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_SALA44.824e-2528.63L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_CITK86.300e-2529.02L-lactate dehydrogenase [cytochrome] OS=Citrobacte... [more]
LLDD_XANP28.228e-2529.37L-lactate dehydrogenase [cytochrome] OS=Xanthobact... [more]
LLDD_SALPC8.228e-2528.63L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_ESCF38.228e-2528.63L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_PSEMY1.833e-2429.96L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_SALNS2.394e-2428.24L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_ALCFA2.394e-2428.24L-lactate dehydrogenase [cytochrome] OS=Alcaligene... [more]
LLDD_PSEE43.127e-2428.74L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_SHISS5.333e-2428.24L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836037 ID=CF836037; Name=CF836037; organism=Citrus sinensis; type=EST; length=724bp
GCGATAGCCTCTTTAATTATATATCGGAGATCACCAATGTTATGGAGTAT
CACGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTTTATGACTACTATGC
ATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAACCGTAATGCATTCT
CTAGGATTCTATTTCGACCACGCATTCTTAGAGATGTAAGCAAGATTGAC
ATGACTACAACAGTCTTGGGCTTCAACATTTCCATGCCCATCATGATTGC
TCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGGGGAGTGTGCAACAG
CAAGGGCAGCCTCAGCAGCTGGCACAATCATGACATTATCTTCATGGGCC
ACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCTGGAATTCGCTTTTT
CCAACTCTATGTGACCAAGGACAGGAATGTGGACGCACAGCTAGTAAAAA
GAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTACCGTCGATACTCCA
AGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGATTTGTTTTGCCGCC
ACATCTGACTTTGAAGAACTATGAGGGCTTGTATATTGGCAAGATGGATA
AGACTGATGACTCTGGATTAGCTTCGTATGTTGCCAACCAAATTGACCGG
TCACTGAACTGGAAGGATGTGAAGTGGCTTCAAACAATCACCTCACTGCC
AATACTCGTGAAGGGTGTTCTTAC
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