CF836037

Overview
NameCF836037
Unique NameCF836037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ECO45 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 72/255 (28.24%), Postives = 119/255 (46.67%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ + P     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ECO24 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 72/255 (28.24%), Postives = 119/255 (46.67%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  ++TL+ N    S +  R RIL+++S + + TT+    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++ N  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_XANCP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris GN=lldD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 71/252 (28.17%), Postives = 120/252 (47.62%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+ +LP  ++ Y   GA  + TL+ N +  + I  R R+LR++S + ++T + G  ++MP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D  +    P     +  + +        +G + K  D           +GL  Y+   A   D S++WKD++W++   + P+++KG+L
Sbjct:    3 ISAASDYRAAAEARLPPFLFHYIDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKTAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_XANC8 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lldD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 71/252 (28.17%), Postives = 120/252 (47.62%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+ +LP  ++ Y   GA  + TL+ N +  + I  R R+LR++S + ++T + G  ++MP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV KDR      ++RA+ AG   +  TVD P  G R  D  +    P     +  + +        +G + K  D           +GL  Y+   A   D S++WKD++W++   + P+++KG+L
Sbjct:    3 ISAASDYRAAAEARLPPFLFHYIDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKTAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP7 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=lldD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 75/255 (29.41%), Postives = 119/255 (46.67%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I+   +Y A A+  LP  ++ Y   GA  + TL+ N    S +  R RILR++S + + TT+    ++MP  +AP     M    GE          G   TLS+ +   +EEV+ T     +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +  +  P+  L+ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYIDGGAYAEHTLRRNVEDLSDVALRQRILRNMSDLSLETTLFNEKLAMPTALAPVGLCGMYARRGEVQAAGAADDKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAALRRYWQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBY (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AYE) GN=lldD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 70/252 (27.78%), Postives = 118/252 (46.83%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I++  +Y A A+ +LP  ++ Y   GA  ++TL+ N    S I  R R+L D+S + + T +    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +    P     +  + ++       +G M +  D           +GL  Y+    +  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISSGNDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYMQSVFHPHWSWNVGLMGRPHDLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIREFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBT (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=lldD PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 70/252 (27.78%), Postives = 118/252 (46.83%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I++  +Y A A+ +LP  ++ Y   GA  ++TL+ N    S I  R R+L D+S + + T +    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +    P     +  + ++       +G M +  D           +GL  Y+    +  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISSGNDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYMQSVFHPHWSWNVGLMGRPHDLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIREFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBS (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain SDF) GN=lldD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 70/252 (27.78%), Postives = 118/252 (46.83%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I++  +Y A A+ +LP  ++ Y   GA  ++TL+ N    S I  R R+L D+S + + T +    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +    P     +  + ++       +G M +  D           +GL  Y+    +  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISSGNDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYMQSVFHPHWSWNVGLMGRPHDLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIREFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBC (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain ACICU) GN=lldD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 70/252 (27.78%), Postives = 118/252 (46.83%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I++  +Y A A+ +LP  ++ Y   GA  ++TL+ N    S I  R R+L D+S + + T +    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +    P     +  + ++       +G M +  D           +GL  Y+    +  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISSGNDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYMQSVFHPHWSWNVGLMGRPHDLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIREFWDGPMVIKGIL 254          
BLAST of CF836037 vs. ExPASy Swiss-Prot
Match: LLDD_ACIB5 (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AB0057) GN=lldD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 70/252 (27.78%), Postives = 118/252 (46.83%), Query Frame = 3
Query:   30 ITNVMEYHALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKDRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVL 722
            I++  +Y A A+ +LP  ++ Y   GA  ++TL+ N    S I  R R+L D+S + + T +    +SMP+ +AP     M    GE          G   TLS+ +   +EEV+       +FQLYV +DR      ++RA+ AG   +  TVD P  G R  D  +    P     +  + ++       +G M +  D           +GL  Y+    +  D S++WKD++W++     P+++KG+L
Sbjct:    3 ISSGNDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYMQSVFHPHWSWNVGLMGRPHDLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIREFWDGPMVIKGIL 254          
The following BLAST results are available for this feature:
BLAST of CF836037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_ECO455.333e-2428.24L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO245.333e-2428.24L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_XANCP6.965e-2428.17L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANC86.965e-2428.17L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_KLEP76.965e-2429.41L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_ACIBY6.965e-2427.78L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBT6.965e-2427.78L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBS6.965e-2427.78L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBC6.965e-2427.78L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIB56.965e-2427.78L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02F02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836037 ID=CF836037; Name=CF836037; organism=Citrus sinensis; type=EST; length=724bp
GCGATAGCCTCTTTAATTATATATCGGAGATCACCAATGTTATGGAGTAT
CACGCTCTTGCAAAGGAGAAATTGCCGAAGATGGTTTATGACTACTATGC
ATCAGGTGCTGAGGACCAGTGGACTCTTCAGGAAAACCGTAATGCATTCT
CTAGGATTCTATTTCGACCACGCATTCTTAGAGATGTAAGCAAGATTGAC
ATGACTACAACAGTCTTGGGCTTCAACATTTCCATGCCCATCATGATTGC
TCCAACGGCATTTCAGAAAATGGCTCATCCTGAAGGGGAGTGTGCAACAG
CAAGGGCAGCCTCAGCAGCTGGCACAATCATGACATTATCTTCATGGGCC
ACTTCCAGTGTCGAGGAAGTTTCTTCAACGGGACCTGGAATTCGCTTTTT
CCAACTCTATGTGACCAAGGACAGGAATGTGGACGCACAGCTAGTAAAAA
GAGCTGAAAGGGCTGGTTTTAAGGCGATTGCCCTTACCGTCGATACTCCA
AGGCTTGGCCGTCGGGAAGCTGATATTAAGAACAGATTTGTTTTGCCGCC
ACATCTGACTTTGAAGAACTATGAGGGCTTGTATATTGGCAAGATGGATA
AGACTGATGACTCTGGATTAGCTTCGTATGTTGCCAACCAAATTGACCGG
TCACTGAACTGGAAGGATGTGAAGTGGCTTCAAACAATCACCTCACTGCC
AATACTCGTGAAGGGTGTTCTTAC
back to top