CF836062

Overview
NameCF836062
Unique NameCF836062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_PONAB (40S ribosomal protein S15 OS=Pongo abelii GN=RPS15 PE=2 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 1.792e-58
Identity = 107/138 (77.54%), Postives = 126/138 (91.30%), Query Frame = -3 
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 531
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+ RKAK+EAP  EKPE V THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYLGEFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_PIG (40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.792e-58
Identity = 107/138 (77.54%), Postives = 126/138 (91.30%), Query Frame = -3 
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 531
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+ RKAK+EAP  EKPE V THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYLGEFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_MOUSE (40S ribosomal protein S15 OS=Mus musculus GN=Rps15 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.792e-58
Identity = 107/138 (77.54%), Postives = 126/138 (91.30%), Query Frame = -3 
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 531
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+ RKAK+EAP  EKPE V THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYLGEFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_MESAU (40S ribosomal protein S15 OS=Mesocricetus auratus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.792e-58
Identity = 107/138 (77.54%), Postives = 126/138 (91.30%), Query Frame = -3 
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 531
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+ RKAK+EAP  EKPE V THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYLGEFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_HUMAN (40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.792e-58
Identity = 107/138 (77.54%), Postives = 126/138 (91.30%), Query Frame = -3 
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 531
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+ RKAK+EAP  EKPE V THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYLGEFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_CHICK (40S ribosomal protein S15 OS=Gallus gallus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.792e-58
Identity = 107/138 (77.54%), Postives = 126/138 (91.30%), Query Frame = -3 
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 531
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+ RKAK+EAP  EKPE V THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYLGEFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_BOVIN (40S ribosomal protein S15 OS=Bos taurus GN=RPS15 PE=2 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 3.993e-58
Identity = 106/138 (76.81%), Postives = 126/138 (91.30%), Query Frame = -3 
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 531
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+ RKAK++AP  EKPE V THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYLGEFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKDAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_XENLA (40S ribosomal protein S15 OS=Xenopus laevis GN=rps15 PE=2 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 3.380e-57
Identity = 104/138 (75.36%), Postives = 124/138 (89.86%), Query Frame = -3 
Query:  118 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 531
            KKRTFKKF++RGVDLD LLDMS +++++L+ AR RRR  RGL+RK  +L+K+ RKAK+EAP  EKPE + THLR+MII+PEM+GS++GVYNGK FNQVEIKPEMIGHYLGEFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFKKFTYRGVDLDQLLDMSYEQVMQLYCARQRRRLNRGLRRKQNSLLKRLRKAKKEAPPMEKPEVIKTHLRDMIILPEMVGSMVGVYNGKAFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15_XIPMA (40S ribosomal protein S15 OS=Xiphophorus maculatus GN=rps15 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.284e-56
Identity = 103/140 (73.57%), Postives = 124/140 (88.57%), Query Frame = -3 
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            + KKRTF+KF++RGVDLD LLDMS ++L++L+ AR RRR  RGL+RK  +L+K+  KAK+EAP  EKPE V THLR+M+I+PEM+GS++GVYNGKTFNQVEIKPEM GHYLGEFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    6 IKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYCARQRRRLNRGLRRKHQSLLKRLPKAKKEAPPMEKPEVVKTHLRDMVILPEMVGSMVGVYNGKTFNQVEIKPEMCGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CF836062 vs. ExPASy Swiss-Prot
Match: RS15B_SCHPO (40S ribosomal protein S15-B OS=Schizosaccharomyces pombe GN=rps15b PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.961e-53
Identity = 100/140 (71.43%), Postives = 116/140 (82.86%), Query Frame = -3 
Query:  118 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKFRKAKREAPNGEKPEPVGTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 537
            L KKRTF+ F++RGV+L+ LLD+S ++LV LF ARARRR  RGL       I+K RKAK EAP  EKP  V THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYLGEFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:   15 LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154
The following BLAST results are available for this feature:
BLAST of CF836062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_PONAB1.792e-5877.5440S ribosomal protein S15 OS=Pongo abelii GN=RPS15... [more]
RS15_PIG1.792e-5877.5440S ribosomal protein S15 OS=Sus scrofa GN=RPS15 P... [more]
RS15_MOUSE1.792e-5877.5440S ribosomal protein S15 OS=Mus musculus GN=Rps15... [more]
RS15_MESAU1.792e-5877.5440S ribosomal protein S15 OS=Mesocricetus auratus ... [more]
RS15_HUMAN1.792e-5877.5440S ribosomal protein S15 OS=Homo sapiens GN=RPS15... [more]
RS15_CHICK1.792e-5877.5440S ribosomal protein S15 OS=Gallus gallus GN=RPS1... [more]
RS15_BOVIN3.993e-5876.8140S ribosomal protein S15 OS=Bos taurus GN=RPS15 P... [more]
RS15_XENLA3.380e-5775.3640S ribosomal protein S15 OS=Xenopus laevis GN=rps... [more]
RS15_XIPMA1.284e-5673.5740S ribosomal protein S15 OS=Xiphophorus maculatus... [more]
RS15B_SCHPO2.961e-5371.4340S ribosomal protein S15-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02F17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836062 ID=CF836062; Name=CF836062; organism=Citrus sinensis; type=EST; length=599bp
GCTAGGATTTACTCCAACAACAAAACCCTAAAAAGGAACCCCAAAAAATT
TGATCCACTTCGATGTTTTCTGAAAATAACAATAAGCTAAATATCCAGAT
CTCCAGCATACATCTCACTTAAGAGGAATGAACCTTGAGGAATGGGTAGC
ACCAATACCAGGTCTACCATGCTTCACAGGCTTGTATGAAATAGAAAACT
CTCCCAGGTAATGCCCAATCATTTCCGGCTTGATTTCAACCTGATTAAAG
GTCTTGCCATTGTACACTCCAATAATGCTTCCAATCATTTCAGGAACAAT
GATCATGTTTCGCAAATGGGTGCCAACTGGTTCGGGCTTCTCACCATTTG
GAGCCTCCCTTTTCGCCTTGCGAAACTTCTTGATCAAAGCCATGGGCTTC
CTCTTTAAACCCCTCTGAAACCTTCTGCGCGCACGTGCACTGAAAAGCTT
GACGAGCTCATCATTGGACATATCAAGAAGAGCGTCCAAATCCACGCCTC
TGAAACTGAACTTCTTGAACGTTCTCTTCTTCGGCAGTCCTGCCGCCGCC
GCCACCGCAATATCAGCATCGCCATCCGCCATGGTTAGAGCTGGGACTG
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