CF836095

Overview
NameCF836095
Unique NameCF836095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: TOM1_DICDI (Target of Myb protein 1 OS=Dictyostelium discoideum GN=tom1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 45/114 (39.47%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   85 MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK-IARKKPDTHVKEKILILIDTWQEAF 423
            MV  +VD+AT+++LI  DW   ++I D+LN DP  A+ VV+ + K++  R S+V LLAL L +++++NC    H++ AE+    E+ + I  KK   +VKEK L ++++W  AF
Sbjct:    1 MVTELVDKATNELLIQTDWTTVLQISDILNRDPIHARGVVRQVTKKLKDR-SRVILLALELADSLLQNC-HCTHVYFAERTFQTELCRLIMNKKTKLNVKEKTLEIVESWGNAF 112          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: STAM2_MOUSE (Signal transducing adapter molecule 2 OS=Mus musculus GN=Stam2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.037e-13
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  100 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 423
            V++AT++     DW++ ++ICD +   P  AKD +K I KR+  +   V L ALTLL   + NCG I H+ V  ++   E+  + + K    V EK+  L+  W E F
Sbjct:   13 VEKATNEYNTTEDWSLIMDICDRVGSTPSGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRSVIKNKAHPKVCEKLKSLMVEWSEEF 120          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: STAM2_RAT (Signal transducing adapter molecule 2 OS=Rattus norvegicus GN=Stam2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.660e-13
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  100 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 423
            V++AT++     DW++ ++ICD +   P  AKD +K I KR+  +   V L ALTLL   + NCG I H+ V  ++   E+  + + K    V EK+  L+  W E F
Sbjct:   13 VEKATNEYNTTEDWSLIMDICDRVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 120          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: STAM2_HUMAN (Signal transducing adapter molecule 2 OS=Homo sapiens GN=STAM2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.660e-13
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  100 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 423
            V++AT++     DW++ ++ICD +   P  AKD +K I KR+  +   V L ALTLL   + NCG I H+ V  ++   E+  + + K    V EK+  L+  W E F
Sbjct:   13 VEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 120          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: VPS27_YARLI (Vacuolar protein sorting-associated protein 27 OS=Yarrowia lipolytica GN=VPS27 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13
Identity = 47/149 (31.54%), Postives = 77/149 (51.68%), Query Frame = 1
Query:   88 VNSMVDRATSDMLIG--PDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK-KPDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRSERSAPV 525
            ++  V++ATS+ L     D A+N+EICD++      AKD ++ +K+R+ +RN  VQL AL L +  IKN G    + +A +  +  ++ IAR    +  V++++L L+  W  AF G             +L   G  FP  S  +A V
Sbjct:   10 IDEQVEKATSESLPSGESDLALNLEICDLIRSKTVPAKDAMRSLKRRLLNRNPNVQLAALQLTDVCIKNGGSHFLVEIASREFVDPLMAIARNDDANPEVRQRVLQLLQQWAVAFAG-QLQLQQVENAVTQLKSEGVSFPSASHDNAAV 157          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: VPS27_PHANO (Vacuolar protein sorting-associated protein 27 OS=Phaeosphaeria nodorum GN=VPS27 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   58 WLGESERAEMVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK----KPDTHVKEKILILIDTWQEAFGG 429
            W G S  +   +  ++RATS  L   D  +N+EI D++     Q KD +K +KKRIG +N  VQL  L L +T +KN G      +A +  +  +  + +      P+  VK K+L LI +W  A  G
Sbjct:    4 WFGSSTNSAF-DEQIERATSSSL--EDMPLNLEISDVIRSKTVQPKDAMKSLKKRIGHKNPNVQLATLNLTDTCVKNGGAHFIQEIASREFMDNLTSLLKAPSTIAPNNDVKNKMLELIQSWATAAEG 128          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: HRS_DROME (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Drosophila melanogaster GN=Hrs PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.017e-12
Identity = 37/108 (34.26%), Postives = 55/108 (50.93%), Query Frame = 1
Query:  100 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 423
            ++ ATS + + PDW   + ICD +N      K+    IKK++ S N      +L +LE+I+KNCG  VH  V  K             P  +V++K+L L+ TW  AF
Sbjct:   10 LENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: HSE1_USTMA (Class E vacuolar protein-sorting machinery protein HSE1 OS=Ustilago maydis GN=HSE1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   97 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQA-KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH--VKEKILILIDTWQEAF 423
            +V +ATSD L   +W +N+E+CD ++     A ++ +  I+KR+  RN+ VQL ALTL + + KNCG   H  +A ++    + +I   + +TH  VK++   L+  W   F
Sbjct:   11 IVLKATSDELTSENWELNLEVCDKVSSGGDTAARNCIAAIQKRLVHRNANVQLYALTLADAVAKNCGLAAHQEIASRSFTQTLARICLDR-NTHSTVKKRCSALVKEWAGEF 121          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: HSE1_COCIM (Class E vacuolar protein-sorting machinery protein HSE1 OS=Coccidioides immitis GN=HSE1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   91 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH--VKEKILILIDTWQEAF 423
            + +V +AT + L   +W   +++CD ++ D   AKD V  + KR+  RN+ VQL    L   + +NCG   H  +A K+    ++++A  + +TH  VK KIL  ++ W E F
Sbjct:   10 DDIVAKATDENLTSENWEYILDVCDKVSADESGAKDAVASMIKRLAHRNANVQLYTFELANALSQNCGPKAHRELASKSFTDALLRLANDR-NTHPQVKSKILEHMEQWTEMF 121          
BLAST of CF836095 vs. ExPASy Swiss-Prot
Match: HSE1_EMENI (Class E vacuolar protein-sorting machinery protein hse1 OS=Emericella nidulans GN=hse1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.460e-11
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  100 VDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH--VKEKILILIDTWQEAF 423
            V +AT + L   +W   +++CD +  +   AKD V  + KR+  RN+ VQL  L L   + +NCG  +H  +A ++    ++++A  + +TH  VK KIL  ++ W E F
Sbjct:   13 VAKATDENLTSENWEYILDVCDKVGAEESGAKDAVAALIKRLAHRNANVQLYTLELANALAQNCGPKIHRELASRSFTDALLRLAGDR-NTHQQVKSKILERMEDWTEMF 121          
The following BLAST results are available for this feature:
BLAST of CF836095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TOM1_DICDI9.769e-1639.47Target of Myb protein 1 OS=Dictyostelium discoideu... [more]
STAM2_MOUSE2.037e-1335.19Signal transducing adapter molecule 2 OS=Mus muscu... [more]
STAM2_RAT2.660e-1335.19Signal transducing adapter molecule 2 OS=Rattus no... [more]
STAM2_HUMAN2.660e-1335.19Signal transducing adapter molecule 2 OS=Homo sapi... [more]
VPS27_YARLI4.538e-1331.54Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_PHANO2.252e-1233.59Vacuolar protein sorting-associated protein 27 OS=... [more]
HRS_DROME5.017e-1234.26Hepatocyte growth factor-regulated tyrosine kinase... [more]
HSE1_USTMA8.558e-1233.93Class E vacuolar protein-sorting machinery protein... [more]
HSE1_COCIM8.558e-1232.74Class E vacuolar protein-sorting machinery protein... [more]
HSE1_EMENI1.460e-1132.73Class E vacuolar protein-sorting machinery protein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836095 ID=CF836095; Name=CF836095; organism=Citrus sinensis; type=EST; length=748bp
TCGGAGCCGGACTCTAAGTGATCTTCTTGGAGAGGTGTTTGATTTGATTC
CCTTGTTTGGTTGGGAGAGAGTGAGAGAGCAGAGATGGTGAATTCAATGG
TGGATAGAGCCACGAGCGACATGTTGATCGGCCCTGATTGGGCCATGAAC
ATCGAGATCTGTGACATGCTCAATCACGACCCTGGGCAAGCAAAGGATGT
TGTTAAAGGTATTAAAAAGCGTATTGGAAGTAGGAATTCAAAAGTTCAAC
TTCTTGCTTTAACACTGTTGGAGACAATTATAAAGAATTGTGGGGATATT
GTCCATATGCATGTTGCAGAGAAAAATGTTCTTCATGAGATGGTGAAAAT
AGCCAGGAAAAAGCCCGACACTCACGTCAAAGAGAAGATATTAATTCTAA
TAGATACTTGGCAAGAAGCTTTCGGAGGACCTAGGGCAAGATATCCACAG
TACTATGCGGCATACCAAGAGTTATTGCGCGCTGGGGCAGTGTTCCCTCA
GAGGTCTGAGAGGTCTGCGCCTGTTTTCACACCACCTCAAACACATCCCT
TGACTTCTTATCCTCAAAATTTTCGAAATCCTGAGCATCAGCAAGAGGCA
GCTGAAGCTTCTGCAGAGTCTGAGTTCCCAACCTTGAGCTTGACAGAAAT
TCAGAATGCACGTGGTATTATGGATGTCCTTGCAGAAATGCTGAATGCAT
TANATCCAAACAACAAAGAGGGCCTTANGCAGGAGGTTATTGTTGATT
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