CF836108

Overview
NameCF836108
Unique NameCF836108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836108 vs. ExPASy Swiss-Prot
Match: PLAS1_TOBAC (Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.083e-44
Identity = 84/99 (84.85%), Postives = 93/99 (93.94%), Query Frame = 3
Query:  240 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 536
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVDVSKISMS E+ LNGPGETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDVSKISMSEEEYLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of CF836108 vs. ExPASy Swiss-Prot
Match: PLAS_SOLCR (Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 3
Query:  240 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 536
            IEVLLG DDG LAFVP +FS+S+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISM  EDLLN PGETY+VTL+EKGTYSFYCSPHQGAGMVG+VTVN
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSISAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVTLSEKGTYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CF836108 vs. ExPASy Swiss-Prot
Match: PLAS_SAMNI (Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 82/99 (82.83%), Postives = 92/99 (92.93%), Query Frame = 3
Query:  240 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 536
            +E+LLGG+DGSLAF+PS+FSV SGEKI FKNNAGFPHNVVFDEDE+PSGVD +KISMS +DLLN PGETY+VTLTE GTY FYCSPHQGAGMVG+VTVN
Sbjct:    1 VEILLGGEDGSLAFIPSNFSVPSGEKITFKNNAGFPHNVVFDEDEVPSGVDSAKISMSEDDLLNAPGETYSVTLTESGTYKFYCSPHQGAGMVGKVTVN 99          
BLAST of CF836108 vs. ExPASy Swiss-Prot
Match: PLAS_CUCPE (Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 3
Query:  240 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 536
            IEVLLGGDDGSLAF+P+ FSV++GEKIVFKNNAGFPHNVVFDEDEIPSGVD  KISM+ EDLLN PGE Y V LTEKG+YSFYCSPHQGAGMVG+VTVN
Sbjct:    1 IEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMNEEDLLNAPGEVYKVNLTEKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CF836108 vs. ExPASy Swiss-Prot
Match: PLAS_LACSA (Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.640e-44
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 3
Query:  243 EVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 536
            EVLLG  DG L F PS+FSV+SGEKIVFKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLN PGETYAVTLTEKGTYSFYC+PHQGAGMVG+VTVN
Sbjct:    2 EVLLGSSDGGLVFEPSTFSVASGEKIVFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAPGETYAVTLTEKGTYSFYCAPHQGAGMVGKVTVN 99          
BLAST of CF836108 vs. ExPASy Swiss-Prot
Match: PLAS_MERPE (Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.914e-44
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 3
Query:  240 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 536
            ++VLLG DDG LAFVP++FSV SGEKI FKNNAGFPHNVVFDEDEIPSGVD SKISM   DLLN PGETYAVTLTEKG+YSFYCSPHQGAGMVG+VTVN
Sbjct:    1 LDVLLGSDDGELAFVPNNFSVPSGEKITFKNNAGFPHNVVFDEDEIPSGVDASKISMDEADLLNAPGETYAVTLTEKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CF836108 vs. ExPASy Swiss-Prot
Match: PLAS_SOLTU (Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 81/99 (81.82%), Postives = 93/99 (93.94%), Query Frame = 3
Query:  240 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 536
            ++VLLGGDDGSLAF+P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISM+ EDLLN  GETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:    1 LDVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMAEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of CF836108 vs. ExPASy Swiss-Prot
Match: PLAS_CUCSA (Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 80/99 (80.81%), Postives = 91/99 (91.92%), Query Frame = 3
Query:  240 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 536
            IE+LLGGDDGSLAFVP++F+V+SGEKI FKNNAGFPHNVVFDEDEIPSGVD  KISM+ EDLL+ PG+ Y V LT+KG+YSFYCSPHQGAGMVG+VTVN
Sbjct:    1 IEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSGVDSGKISMNEEDLLBAPGZVYZVZLTZKGSYSFYCSPHQGAGMVGKVTVN 99          
BLAST of CF836108 vs. ExPASy Swiss-Prot
Match: PLAS_CAPBU (Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 82/99 (82.83%), Postives = 87/99 (87.88%), Query Frame = 3
Query:  240 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 536
            IEVLLGG DGSLAFVP+ FS++ GEKIVFKNNAGFPHNVVFDEDEIPSGVD SKISM   DLLN  GETY V LTE GTYSFYC+PHQGAGMVG+VTVN
Sbjct:    1 IEVLLGGGDGSLAFVPNDFSIAKGEKIVFKNNAGFPHNVVFDEDEIPSGVDASKISMDENDLLNAAGETYEVALTEAGTYSFYCAPHQGAGMVGKVTVN 99          
BLAST of CF836108 vs. ExPASy Swiss-Prot
Match: PLAS_PHAVU (Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.674e-42
Identity = 82/99 (82.83%), Postives = 86/99 (86.87%), Query Frame = 3
Query:  240 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 536
            +EVLLG  DGSL FVPS FSV SGEKIVFKNNAGFPHNVVFDEDEIP+GVD  KISM  E+LLN PGETY VTL  KGTYSFYCSPHQGAGMVG+VTVN
Sbjct:    1 LEVLLGSGDGSLVFVPSEFSVPSGEKIVFKNNAGFPHNVVFDEDEIPAGVDAVKISMPEEELLNAPGETYVVTLDTKGTYSFYCSPHQGAGMVGKVTVN 99          
The following BLAST results are available for this feature:
BLAST of CF836108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PLAS1_TOBAC2.083e-4484.85Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_SOLCR2.720e-4484.85Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1[more]
PLAS_SAMNI2.720e-4482.83Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1[more]
PLAS_CUCPE2.720e-4484.85Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1[more]
PLAS_LACSA4.640e-4486.73Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1[more]
PLAS_MERPE7.914e-4484.85Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 ... [more]
PLAS_SOLTU1.763e-4381.82Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=... [more]
PLAS_CUCSA3.928e-4380.81Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1[more]
PLAS_CAPBU3.325e-4282.83Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE... [more]
PLAS_PHAVU9.674e-4282.83Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02G21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836108 ID=CF836108; Name=CF836108; organism=Citrus sinensis; type=EST; length=724bp
GAAAAAACAGCACAATCCCATTTACAGTTACAATGGCTACTGTCACCTCT
GCAGCTGTCACCGTCCCAACTTTCACCGGCCTTAAAGCCGGTGCAACACC
AGCCAGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCCAA
AGCTCAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGGCC
ACAGCTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAGGTTTT
GCTTGGTGGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTTCTCTG
TCAGCTCCGGTGAAAAGATTGTGTTCAAGAACAATGCTGGGTTCCCACAC
AACGTTGTTTTCGATGAAGATGAGATTCCGAGTGGTGTTGATGTTTCAAA
AATCTCCATGTCTACAGAAGACCTTCTCAATGGTCCTGGAGAGACTTATG
CTGTTACTCTGACTGAAAAAGGCACTTACTCTTTCTACTGTTCCCCTCAC
CAAGGAGCTGGCATGGTTGGACAAGTGACTGTTAATTAAGTTCACATTCA
GACTTTGTTTGCCTCATCTCATTGGTTATCGTTCTCTTCTTTTTGCATTT
TATGAGTATCATACATATTTTCATTTGGTGAGAGAGAATGTTATGTGGTG
AGACACTTCAACCAAGCCAATAAACCTCTGTATTTTCCATTTATTTCAAA
TGCAGATTTGTGATGTAACTAATT
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