CF836131

Overview
NameCF836131
Unique NameCF836131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA26_ARATH (Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  275 VVGWPPVRAYRKNAMKGSCK-----------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRNHVN-----ERKIIDNVNGV-EYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 613
            VVGWPPVR++RKN    S                               FVK+ ++G P  RKVDL  Y+SY++L   ++ +F   L  +  ++     E+ II  ++G  E+  TYED +GD MLVGDVPW+MFV S KR+R++KSSE
Sbjct:  104 VVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSE 252          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA6_ORYSJ (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 74/229 (32.31%), Postives = 102/229 (44.54%), Query Frame = 2
Query:  143 TKAGTKRGFLETVDLNLMSSSNDNKH-----------CEENDAMASTT-------------TPATKAQ-------------VVGWPPVRAYRKNAMKGS--------------------CK---FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRNHVNERKIIDN----------VNGV-EYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 613
            T  G KRGF++TV+ +     ND K             EE  A  S                PAT A+             VVGWPP+R++R+N    S                    CK    VK+ ++G P  RK+DL  Y+SY  L SA++ +F  FL  +      +I             ++G  EY   YED +GD MLVGDVPWK+FV + KR+R+++SSE
Sbjct:   96 TTTGAKRGFIDTVE-DKTEGYNDQKQQARAGCGKELAVEEMIAAVSERKKGCCPPPPPPHGAPATPARNRPQTQGRGAAAPVVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 63/186 (33.87%), Postives = 89/186 (47.85%), Query Frame = 2
Query:  197 SSSNDNKHCEENDA-----MASTTTPATK-------AQVVGWPPVRAYRKNAMKGSCK-----------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRN------HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 613
            SSS+ +K  E + A     + S  T A+K       A VVGWPPVR++R+N    S                               FVK+ ++G P  RKVDL  Y  Y +L +A++ +F  L            +     + V G EY   YED +GD MLVGDVPW+MF+ + KR+R++KSS+
Sbjct:   33 SSSSSSKPSEGSTAAPAFALRSNGTNASKPSGAAAAAPVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLFRGLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSD 218          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 59/190 (31.05%), Postives = 91/190 (47.89%), Query Frame = 2
Query:  146 KAGTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGS--------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI--------------RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 613
            KA   +G  E  + +   ++ +N     N+    T +P+T   VVGWPPVR +R+N    S                      F+K+ ++G P  RK+DL  + SY++L  A++ +F  L                +  V    ++D     EY   YED +GD +LVGDVPW MFV S KR+R++K+S+
Sbjct:   98 KANKNKGSPEEEEAHPPPATGNNALASNNNGCFQTRSPSTP--VVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTG--EYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 62/170 (36.47%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  242 ASTTTPATK----AQVVGWPPVRAYRKNAMKGSCK----------------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH-----VNERKIIDNV---NGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 613
            +ST T + K      VVGWPPVR++RKN   GS                                    FVK+ + G P  RKVDL  ++SY++L   ++ +F  L          + + K I  +   NG EY  TYED +GD MLVGDVPW+MFV S KR+R++K+SE
Sbjct:   82 SSTKTTSHKRTAPGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQRDFPSSIEDEKPITGLLDGNG-EYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSE 250          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA25_ORYSJ (Auxin-responsive protein IAA25 OS=Oryza sativa subsp. japonica GN=IAA25 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 63/182 (34.62%), Postives = 86/182 (47.25%), Query Frame = 2
Query:  209 DNKHCEEND-AMASTTTPATKAQVVGWPPVRAYRKNAM--------------------------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLT--IRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAK 646
            +  H   N+ A+      A+ AQ+VGWPPVRA+RKN                                    S  FVKV +EG    RK+DL+ + SY  L  AL+ MF  FL+  I    NE + ++  +   YV  YED +GD MLVGDVPW++F+ S KR+ + +        PR  AK
Sbjct:   70 EQAHQRPNECAVQRENRAASSAQLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQQMEEGSKKRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYIAQD-------PRVHAK 244          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA20_ORYSJ (Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica GN=IAA20 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 55/150 (36.67%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  158 KRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK--FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLM 601
            KRGF E +        ND+ +    D  +       + ++VGWPPV+   +    G C   +VKV +EG    RK+DL I  SY ELL  L  MF         N+    D      Y  TYED +GDWM VGDVPW+ F +S KR++++
Sbjct:   40 KRGFEEALGGFKTDDDNDDGNGRGGDGDSDGEMGNKRRKLVGWPPVKCLHRRR-DGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFP------STNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 65/207 (31.40%), Postives = 90/207 (43.48%), Query Frame = 2
Query:  161 RGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK---------------------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-------------SFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGL 625
            R  L +   +L   S   +  + + A AS    AT+   VGWPP+R YR N++    K                                        VKV ++G    RKVDL    SY  L   L+ MF              + TI+      K++D  +  EY+ TY+DKDGDWMLVGDVPW+MF+ S  R+R+MK+S   G+
Sbjct:   59 RSSLSSSSSSLTRESGTKRSADSSPAAASN---ATRQVAVGWPPLRTYRINSLVNQAKSLATEGGLSSGIQKETTKSVVVAAKNDDACFIKSSRTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIPSPVTRSNTQGYKTIKETCTS-KLLDGSS--EYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA31_ARATH (Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  245 STTTPATKAQVVG---WPPVRAYRKNAMKG---------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMK 604
            S T P+T  Q      WPP+++  ++ +KG         +  FVKV +EG P  RK+DL ++  Y+ LL  L  MF    I  +  +RK         +V TYEDKDGDWM+VGD+PW MF+E+ +R+++ +
Sbjct:   32 SLTFPSTSPQREARQDWPPIKSRLRDTLKGRRLLRRGDDTSLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGN-RDRK--------HHVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITR 154          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 2
Query:  269 AQVVGWPPVRAYRKNAMKGS---------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH-----------------VNERK----IIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 613
            A VVGWPPVR++R+N    S                      +FVKV ++G P  RKVDL  +  Y EL +A++ +F  L                        E +    ++D  +G EY   YED +GD MLVGDVPW MF+ + +R+R+++SS+
Sbjct:   56 APVVGWPPVRSFRRNLASSSSSSKPPRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSG-EYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSD 211          
The following BLAST results are available for this feature:
BLAST of CF836131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA26_ARATH5.207e-1938.93Auxin-responsive protein IAA26 OS=Arabidopsis thal... [more]
IAA6_ORYSJ4.408e-1832.31Auxin-responsive protein IAA6 OS=Oryza sativa subs... [more]
IAA2_ORYSJ4.408e-1833.87Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA7_ORYSJ5.757e-1831.05Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]
IAA18_ARATH5.757e-1836.47Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]
IAA25_ORYSJ2.187e-1734.62Auxin-responsive protein IAA25 OS=Oryza sativa sub... [more]
IAA20_ORYSJ2.187e-1736.67Auxin-responsive protein IAA20 OS=Oryza sativa sub... [more]
IAA10_ARATH2.857e-1731.40Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA31_ARATH3.731e-1737.88Auxin-responsive protein IAA31 OS=Arabidopsis thal... [more]
IAA16_ORYSJ1.200e-1533.76Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836131 ID=CF836131; Name=CF836131; organism=Citrus sinensis; type=EST; length=726bp
TTTTGTTAACCCATATAACCACATAGCAAAGCAAAATTTGGCAACCTTAG
ACCTAATGACACCGGAAAAAGTTAATCATTTGCCGGAATCCGACACGAAG
CTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACGAAAGC
CGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCATGAGCT
CAAGCAACGATAACAAACATTGCGAAGAGAACGATGCAATGGCCTCGACT
ACAACCCCAGCAACCAAGGCACAAGTGGTGGGGTGGCCGCCGGTGAGAGC
ATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATTTGTAAAGGTGGCAG
TTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTGAGATATACCATAGT
TATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTCTCATTCTTGACTAT
AAGGAACCACGTAAATGAGAGAAAGATTATAGATAATGTAAATGGAGTTG
AATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTAGTTGGA
GATGTGCCATGGAAAATGTTTGTTGAATCTTGCAAGCGAGTAAGGTTGAT
GAAAAGCTCAGAAGCAATTGGGTTAGCTCCAAGAACACCTGCAAAAAATT
CAAGCAAGAGTTGAAGAATGAATAACAGAATAAGGGGCTTATTGTATAAG
GAGGCATTCCTGGAGTGACAATTAAT
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