CF836163

Overview
NameCF836163
Unique NameCF836163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836163 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.896e-49
Identity = 96/179 (53.63%), Postives = 124/179 (69.27%), Query Frame = 2
Query:   35 SPINQSTMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 568
            S + Q+T  NP VFFD+ +GG+P GR+ +ELFADVTPRTAENFR  CTGE    + G+P  YKGS FHRVI  FM Q             +IYG+ KF+DENF  +H  PG+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQV++GMD+V+ IE   ++  + N+ VVI  CG++
Sbjct:    6 SAVPQTTSSNPIVFFDVALGGEPLGRLKLELFADVTPRTAENFRQFCTGESK-NQQGRPQGYKGSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQCGEM 183          
BLAST of CF836163 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.476e-49
Identity = 96/166 (57.83%), Postives = 115/166 (69.28%), Query Frame = 2
Query:   71 VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 568
            V+FD+++ G+PAGRI  +LF DV P+TA+NFRALCTGE+G G       YKGS FHRVIP FM Q            +SIYG KFADENF  KH+ PG+LSMANAGP TNGSQFF+ T    WLDG HVVFG+V + M++V  IE +GS+SG     VVI DCG L
Sbjct:    3 VYFDISIDGKPAGRIEFQLFEDVVPKTAKNFRALCTGEQGFG-------YKGSKFHRVIPQFMLQGGDFTRGDGTGGKSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASGAVKAKVVIEDCGVL 161          
BLAST of CF836163 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.223e-49
Identity = 97/172 (56.40%), Postives = 119/172 (69.19%), Query Frame = 2
Query:   65 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV---VIADCGQL 568
            PKVFFD++  G+P GR+V EL+ DV P+TAENFRALCTGEKG  +S GK LHYKGS FHR+I  FMCQ            ESIYG KF DENF   H  P +LSMANAG  TNGSQFF+ T  T  L+GKHVVFG+V++G  +V+ +E+     G  +KPV   +I+DCG+L
Sbjct:    8 PKVFFDISADGKPKGRVVFELYNDVVPKTAENFRALCTGEKGASESSGKQLHYKGSIFHRIIKDFMCQGGDFTHGSGIGGESIYGEKFEDENFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQLER--CDKGENDKPVEDWIISDCGEL 177          
BLAST of CF836163 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.605e-48
Identity = 98/173 (56.65%), Postives = 120/173 (69.36%), Query Frame = 2
Query:   56 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVG-KSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 568
            M   K F D+++GG+  GRIV+EL+ DV P+TAENFR LCTGEKG+G  +G PLHYKG+ FHRVI GFM Q            ESIYG KF DENF  KH   G+LSMAN+GP TNGSQFF+ T +T  LDGKHVVFG+V +GM VV++IE V        ++ VVI DCG++
Sbjct:    1 MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEI 173          
BLAST of CF836163 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.096e-48
Identity = 95/172 (55.23%), Postives = 117/172 (68.02%), Query Frame = 2
Query:   56 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQL 568
            M NP+VFF++ +GG+  G+I  ELFAD  P+TAENFRALCTGEKG  ++G PLH+KGSSFHRVI  FM Q            ESIYG KF DE F   H  P +LSMANAGP TNGSQFF+ T +T  LD KHVVFG+++ G  +V+ IE+  +    R  +PV I DCG+L
Sbjct:    1 MTNPRVFFEVAIGGKTIGKIYFELFADKVPKTAENFRALCTGEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVDCGEL 172          
BLAST of CF836163 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.096e-48
Identity = 100/173 (57.80%), Postives = 119/173 (68.79%), Query Frame = 2
Query:   56 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGK-SGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 568
            M NP+VFFD+ V G   GRIV+ELFAD  P+TAENFRALCTGEKG+GK S  PLHYKGS FHR+I GFMCQ            ESIYG+ F DE+F +KH   G+LSMAN GP T  SQFF+ T  T  LDGKHVVFG+VV G +VV+ +E +      R    V+IA+CG+L
Sbjct:    1 MINPRVFFDIDVDGNRIGRIVIELFADQVPKTAENFRALCTGEKGIGKVSNMPLHYKGSIFHRIIKGFMCQGGDFTHRTGKGGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVVEMMENEPVDDQDRPLHNVMIANCGEL 173          
BLAST of CF836163 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.575e-48
Identity = 93/146 (63.70%), Postives = 106/146 (72.60%), Query Frame = 2
Query:   68 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 505
            KV+FD+ +GG+ AGRIVM LF +V P+T ENFRALCTGEK  G       YKGSSFHR+I  FM Q             SIYG+KF DENF  KHTGPGILSMANAGP TNGSQFF+CT KT WLD KHVVFGQV+EGM +V+ +E
Sbjct:   96 KVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYG-------YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLE 234          
BLAST of CF836163 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.669e-48
Identity = 94/169 (55.62%), Postives = 113/169 (66.86%), Query Frame = 2
Query:   62 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 568
            NP VFFD+   G+P GRI+MELF+++ P+TAENFRALCTGEKG G       +K S FHRV+P F+CQ            +SIYG KF DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVFG V +GMD V+ IE  GS  G  ++ + I +CGQL
Sbjct: 2892 NPVVFFDVCADGEPLGRIIMELFSNIVPQTAENFRALCTGEKGFG-------FKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
BLAST of CF836163 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 95/169 (56.21%), Postives = 110/169 (65.09%), Query Frame = 2
Query:   62 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 568
            NP VFFD+   G+P GRI MELF+++ PRTAENFRALCTGEKG G       +K S FHRVIP F+CQ            +SIYG KF DENF  KHTGPG+LSMAN G  TN SQF +   K E LD KHVVFG V +GMD VK IE  GS  G   + + I +CGQ+
Sbjct: 3063 NPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 3224          
BLAST of CF836163 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.774e-47
Identity = 94/169 (55.62%), Postives = 111/169 (65.68%), Query Frame = 2
Query:   62 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 568
            NP VFFD+    +P GRI MELF+++ P+TAENFRALCTGEKG G       +K S FHRVIP F+CQ             SIYG KF DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVFG V +GMD VK IE  GS  G  ++ ++I +CGQ+
Sbjct:  924 NPVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGEKGFG-------FKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
The following BLAST results are available for this feature:
BLAST of CF836163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
PPIH_EMENI1.896e-4953.63Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
PPIA2_RHIOR2.476e-4957.83Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
PPID_DEBHA4.223e-4956.40Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]
CYP40_ARATH1.605e-4856.65Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
PPID_YARLI2.096e-4855.23Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]
CYP11_RHIOR2.096e-4857.80Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
CP20C_ARATH3.575e-4863.70Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
RBP2_MOUSE4.669e-4855.62E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
RBP2_HUMAN1.774e-4756.21E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
RBP2_BOVIN1.774e-4755.62E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02I08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836163 ID=CF836163; Name=CF836163; organism=Citrus sinensis; type=EST; length=588bp
CAAATCAGAAGCCCTTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAAT
CAACAATGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAG
CCGGCCGGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAAC
CGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAAGT
CCGGCAAGCCTCTCCACTACAAAGGCTCGTCCTTCCACCGTGTGATCCCC
GGATTCATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGG
CGAATCAATCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAAGC
ACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAAC
GGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAA
GCACGTTGTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGCCA
TCGAGAAAGTGGGGTCCAGCTCCGGCAGGACCAACAAGCCCGTCGTGATC
GCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATA
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