CF836218

Overview
NameCF836218
Unique NameCF836218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK1_SOYBN (Nucleoside diphosphate kinase 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.063e-42
Identity = 77/117 (65.81%), Postives = 98/117 (83.76%), Query Frame = 3
Query:  321 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 671
            E+TFI IKPDGVQRGLI EIISRFE+KGF L  +K+V   + FA+KHY DL  +PFF+GL +++ SGPV+AM+WEG+ V+T GRK+IGAT+P +SEPGTIRGD A+ +GRN+IHGSD
Sbjct:    3 EQTFIMIKPDGVQRGLIGEIISRFEKKGFYLKGLKLVTVDRPFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAIDIGRNVIHGSD 119          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.612e-42
Identity = 81/118 (68.64%), Postives = 98/118 (83.05%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 671
            MERTFIAIKPDGVQRGL+  II RFE+KGFKLV +K + PS+E A++HY   +ERPFFNGL EF++SGP++A+V EGEGV+   RKLIGAT+P  +EPGTIRGD  V +GRNIIHGSD
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGRNIIHGSD 118          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_SYNE7 (Nucleoside diphosphate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=ndk PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.612e-42
Identity = 81/118 (68.64%), Postives = 98/118 (83.05%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 671
            MERTFIAIKPDGVQRGL+  II RFE+KGFKLV +K + PS+E A++HY   +ERPFFNGL EF++SGP++A+V EGEGV+   RKLIGAT+P  +EPGTIRGD  V +GRNIIHGSD
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGRNIIHGSD 118          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.128e-41
Identity = 78/118 (66.10%), Postives = 98/118 (83.05%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 671
            MERTF+A+KPDGVQR L+ EII RFE KGFKLV +K++  SK+ A++HY + KE+PFF GL +F++SGPV+AMVWEG+GV+   RK+IGAT+P  SEPGTIRGD  V +GRNIIHGSD
Sbjct:    1 MERTFLAVKPDGVQRALVGEIIRRFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLVQFITSGPVVAMVWEGKGVVASARKIIGATNPLNSEPGTIRGDYGVDIGRNIIHGSD 118          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_THEEB (Nucleoside diphosphate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 78/120 (65.00%), Postives = 98/120 (81.67%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            MERTF+AIKPDGVQRGL+  II RFE+KG+ LV +K++  S+E A++HY + K++PFF GL  F++SGPV+AMVWEG GVI   RKLIGAT+P  +EPGT+RGD AV VGRN+IHGSD P
Sbjct:    1 MERTFLAIKPDGVQRGLVGTIIQRFEQKGYTLVGLKLMRVSRELAEQHYGEHKDKPFFPGLVNFITSGPVVAMVWEGRGVIANARKLIGATNPLNAEPGTLRGDFAVDVGRNVIHGSDSP 120          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_ANAVT (Nucleoside diphosphate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndk PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.924e-41
Identity = 79/120 (65.83%), Postives = 96/120 (80.00%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            MERTF+AIKPDGVQRGL+ EII RFE KGF LV +K +  SKE A++HY   +ERPFF  L EF++SGPV+AMVWEG+GVI   RK+IGAT+P  +EPGTIRGD  + +GRN+IHGSD P
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFGINIGRNLIHGSDAP 120          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_ANASP (Nucleoside diphosphate kinase OS=Anabaena sp. (strain PCC 7120) GN=ndk PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.924e-41
Identity = 79/120 (65.83%), Postives = 96/120 (80.00%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            MERTF+AIKPDGVQRGL+ EII RFE KGF LV +K +  SKE A++HY   +ERPFF  L EF++SGPV+AMVWEG+GVI   RK+IGAT+P  +EPGTIRGD  + +GRN+IHGSD P
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFGINIGRNLIHGSDAP 120          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.513e-41
Identity = 76/117 (64.96%), Postives = 97/117 (82.91%), Query Frame = 3
Query:  321 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 671
            E+TFI IKPDGVQRGL+ EIISRFE+KGF L  +K V   + FA+KHY DL  +PFF+GL +++ SGPV+AM+WEG+ V+T GRK+IGAT+P +SEPGTIRGD A+ +GRN+IHGSD
Sbjct:    3 EQTFIMIKPDGVQRGLVGEIISRFEKKGFYLKGLKFVNVERAFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAIDIGRNVIHGSD 119          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDK_NOSP7 (Nucleoside diphosphate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.281e-41
Identity = 78/120 (65.00%), Postives = 95/120 (79.17%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGP 677
            MERTF+AIKPDGVQRGL+ EII RFE KGF LV +K +  SKE A++HY   +ERPFF  L EF++S PV+AMVWEG+GV+   RK+IGAT+P  SEPGTIRGD  + +GRN+IHGSD P
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLKVSKELAEQHYGVHRERPFFGSLVEFITSSPVVAMVWEGDGVVASARKIIGATNPLTSEPGTIRGDFGINIGRNLIHGSDAP 120          
BLAST of CF836218 vs. ExPASy Swiss-Prot
Match: NDKA_FLABI (Nucleoside diphosphate kinase A OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.281e-41
Identity = 75/118 (63.56%), Postives = 96/118 (81.36%), Query Frame = 3
Query:  318 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD 671
            ME+TFI IKPDGVQ GL+ EII RFE+KGF L  +K++   + FA+KHY DL  +PFFNGL E++ SGPV+AMVWEG+ V+T GR++IGAT+P +S PGTIRGD A+ +GRN+IHGSD
Sbjct:    1 MEQTFIMIKPDGVQSGLVGEIIGRFEKKGFSLKGLKLLTVDRAFAEKHYADLSSKPFFNGLVEYIVSGPVVAMVWEGKNVVTTGREIIGATNPAESAPGTIRGDFAIDIGRNVIHGSD 118          
The following BLAST results are available for this feature:
BLAST of CF836218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK1_SOYBN5.063e-4265.81Nucleoside diphosphate kinase 1 OS=Glycine max PE=... [more]
NDK_SYNP66.612e-4268.64Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNE76.612e-4268.64Nucleoside diphosphate kinase OS=Synechococcus elo... [more]
NDK_CYAP41.128e-4166.10Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK_THEEB1.473e-4165.00Nucleoside diphosphate kinase OS=Thermosynechococc... [more]
NDK_ANAVT1.924e-4165.83Nucleoside diphosphate kinase OS=Anabaena variabil... [more]
NDK_ANASP1.924e-4165.83Nucleoside diphosphate kinase OS=Anabaena sp. (str... [more]
NDK1_PEA2.513e-4164.96Nucleoside diphosphate kinase 1 OS=Pisum sativum G... [more]
NDK_NOSP73.281e-4165.00Nucleoside diphosphate kinase OS=Nostoc punctiform... [more]
NDKA_FLABI3.281e-4163.56Nucleoside diphosphate kinase A OS=Flaveria bident... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836218 ID=CF836218; Name=CF836218; organism=Citrus sinensis; type=EST; length=677bp
CGTTTACTCTCTTGTTTCAGCTTAAATTTGAGTCTTGAGAATCCAATCCA
ATCCCAAGTATGAGCTCTCAGATAGTTAGATCTGCTTCTAGAACCGCAAG
GTCTCTGCTTTCAGCTTCCAAGAATTCGCGCTTTTACTCCGAAGGGCGAG
CTGTATCTGCTGCAGCGGCAGTTACATTCAGTGGGAAGTTGCCTTATCTT
GTTTCAAGTTTTGGGAGGGCTGGTTCCTCAACTGCATCTCGATCATGGCT
CTCGGGAGCCATTGCAATTCCTGCTGCAGCTTACACGCTCCAGGAGCAGG
AAGTACATGCTGCAGAGATGGAACGCACTTTCATTGCCATCAAGCCAGAT
GGGGTGCAAAGAGGACTGATTTCAGAAATCATCTCTCGCTTTGAGCGCAA
AGGCTTTAAGCTTGTGGCCATTAAGATAGTAGTTCCATCAAAAGAGTTTG
CACAAAAACATTATCATGATCTGAAGGAAAGACCCTTCTTTAATGGCCTG
TGCGAGTTCCTTAGCTCTGGTCCAGTCATTGCCATGGTATGGGAAGGAGA
GGGAGTTATTACGTATGGTCGCAAACTCATTGGAGCCACAGATCCTCAGA
AATCAGAACCTGGAACAATCAGAGGCGATCTAGCTGTTGTTGTTGGAAGA
AACATCATTCATGGAAGTGATGGCCCC
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