CF836232

Overview
NameCF836232
Unique NameCF836232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_BURS3 (Urease accessory protein ureG OS=Burkholderia sp. (strain 383) GN=ureG PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.568e-58
Identity = 116/203 (57.14%), Postives = 143/203 (70.44%), Query Frame = -2
Query:  219 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 824
            AP    R        VGIGGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ + + F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA+L VM  D  +MR   P++   +K   GV +++  I
Sbjct:    5 APSSARRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLSRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPLVGANLDVMASDTKKMRGERPYVMTNLKALEGVADVIAFI 207          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_VIBF1 (Urease accessory protein ureG OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=ureG PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.272e-58
Identity = 110/189 (58.20%), Postives = 142/189 (75.13%), Query Frame = -2
Query:  216 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 779
            +G+GGPVG+GKTAL+  LCK LRD Y +A VTNDI+T+ED + L +  AL  +RI  VETGGCPH AIRED S+NL  +EEL+   K  D++  ESGGDNL+A FS ELAD  IY+IDV+ G+KIPRKGGPGIT++DLL+INK DLA  +GA L VME D  RMR   P++F  +K G+G+++I+  I+
Sbjct:   10 IGVGGPVGSGKTALLEVLCKTLRDTYQIAVVTNDIYTQEDAKILTQAEALAADRIIGVETGGCPHTAIREDASMNLAAVEELAQRHKNLDVVFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDLLIINKIDLAPYVGASLEVMESDTARMRPTRPYVFTNLKEGVGLDKIIEFIV 198          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_DELAS (Urease accessory protein ureG OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=ureG PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.272e-58
Identity = 111/190 (58.42%), Postives = 140/190 (73.68%), Query Frame = -2
Query:  213 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ 779
            VGIGGPVG+GKT L+  LCK +R  Y L  +TNDI+TKED   L    ALP ERI  VETGGCPH AIRED SINL  ++ +   F +AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLV+NKTDLA  +GA+L++ME D  RMR   P++   VK G G+ E+++ I +
Sbjct:   13 VGIGGPVGSGKTTLLEMLCKAMRAHYDLVVITNDIYTKEDQRLLTVAEALPPERIMGVETGGCPHTAIREDASINLEAVDRMLRQFPEADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVVNKTDLAPYVGANLSIMEADTQRMRAHKPYVMGSVKSGKGLREVIDFITE 202          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_BURCH (Urease accessory protein ureG OS=Burkholderia cenocepacia (strain HI2424) GN=ureG PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.272e-58
Identity = 116/203 (57.14%), Postives = 143/203 (70.44%), Query Frame = -2
Query:  219 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 824
            AP  + R        VGIGGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ +   F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA+L VM  D  +MR   P++   +K   GV +++  I
Sbjct:    5 APSSIRRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPLVGANLDVMASDTRKMRGERPYVMTNLKALDGVADVIAFI 207          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_BURCA (Urease accessory protein ureG OS=Burkholderia cenocepacia (strain AU 1054) GN=ureG PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.272e-58
Identity = 116/203 (57.14%), Postives = 143/203 (70.44%), Query Frame = -2
Query:  219 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 824
            AP  + R        VGIGGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ +   F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA+L VM  D  +MR   P++   +K   GV +++  I
Sbjct:    5 APSSIRRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPLVGANLDVMASDTRKMRGERPYVMTNLKALDGVADVIAFI 207          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_BURCC (Urease accessory protein ureG OS=Burkholderia cenocepacia (strain MC0-3) GN=ureG PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.498e-58
Identity = 116/203 (57.14%), Postives = 143/203 (70.44%), Query Frame = -2
Query:  219 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 824
            AP  + R        VGIGGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ +   F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA+L VM  D  +MR   P++   +K   GV +++  I
Sbjct:    5 APSSVRRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPLVGANLDVMASDTRKMRGERPYVMTNLKALDGVADVIAFI 207          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_RHILW (Urease accessory protein ureG OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=ureG PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.620e-57
Identity = 115/188 (61.17%), Postives = 139/188 (73.94%), Query Frame = -2
Query:  219 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 779
            VGIGGPVG+GKTAL   LCK +RD YS+A VTNDI+T ED E L+R  ALP +RI  VETGGCPH AIRED +INL  +  L+      D++  ESGGDNLAA FS +LAD  IY+I V  G++IPRKGGPGIT++DLLVINK DLA  +GADL VM+RDA RMR   PF+F+ +K G GV  IV+ +
Sbjct:   10 VGIGGPVGSGKTALTEKLCKAMRDNYSVAVVTNDIYTTEDAEALVRMQALPSDRIVGVETGGCPHTAIREDATINLQAIAGLNQRIPDLDVVFIESGGDNLAATFSPDLADITIYVISVCQGEEIPRKGGPGITRSDLLVINKKDLAPYVGADLEVMDRDATRMRASRPFVFSDMKRGDGVSSIVSFL 197          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_HAEIN (Urease accessory protein ureG OS=Haemophilus influenzae GN=ureG PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.620e-57
Identity = 112/203 (55.17%), Postives = 145/203 (71.43%), Query Frame = -2
Query:  219 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 824
            A  I  RN       +G+ GPVG GKTAL+  L + +  KYS+A +TNDI+T+ED EFL +N  LP ERI  VETGGCPH AIRED S+NL  ++E+   F   +++  ESGGDNL+A FS +LAD  I++IDV+ G+KIPRKGGPGIT++DLLVINKTDLA  +GADL+VMERDA RMR+G PFIF  +     ++ ++  I
Sbjct:    6 ATMINKRNIMRNYIKIGVAGPVGAGKTALIEKLTREIASKYSVAVITNDIYTQEDAEFLTKNSLLPPERIMGVETGGCPHTAIREDASMNLEAVDEMVTRFPDVEIVFIESGGDNLSATFSPDLADVTIFVIDVAQGEKIPRKGGPGITRSDLLVINKTDLAPFVGADLSVMERDARRMRNGQPFIFTNLMKKENLDGVIGWI 208          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_BURA4 (Urease accessory protein ureG OS=Burkholderia ambifaria (strain MC40-6) GN=ureG PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.620e-57
Identity = 113/188 (60.11%), Postives = 140/188 (74.47%), Query Frame = -2
Query:  219 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 779
            VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ + + F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA+L VM  D  +MR   P++   +K   GV ++V  I
Sbjct:   20 VGIGGPVGSGKTTLLEMLCKAMRERYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLSRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPLVGANLDVMASDTKKMRGERPYVMTNLKALEGVADVVAFI 207          
BLAST of CF836232 vs. ExPASy Swiss-Prot
Match: UREG_BURVG (Urease accessory protein ureG OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ureG PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.116e-57
Identity = 113/188 (60.11%), Postives = 139/188 (73.94%), Query Frame = -2
Query:  219 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 779
            VGIGGPVG+GKT L+  LCK +RD Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ + + F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA+L VM  D  +MR   P++   +K   GV +++  I
Sbjct:   20 VGIGGPVGSGKTTLLEMLCKAMRDTYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLSRFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPLVGANLDVMASDTKKMRGERPYVMTNLKALDGVADVIAFI 207          
The following BLAST results are available for this feature:
BLAST of CF836232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UREG_BURS35.568e-5857.14Urease accessory protein ureG OS=Burkholderia sp. ... [more]
UREG_VIBF17.272e-5858.20Urease accessory protein ureG OS=Vibrio fischeri (... [more]
UREG_DELAS7.272e-5858.42Urease accessory protein ureG OS=Delftia acidovora... [more]
UREG_BURCH7.272e-5857.14Urease accessory protein ureG OS=Burkholderia ceno... [more]
UREG_BURCA7.272e-5857.14Urease accessory protein ureG OS=Burkholderia ceno... [more]
UREG_BURCC9.498e-5857.14Urease accessory protein ureG OS=Burkholderia ceno... [more]
UREG_RHILW1.620e-5761.17Urease accessory protein ureG OS=Rhizobium legumin... [more]
UREG_HAEIN1.620e-5755.17Urease accessory protein ureG OS=Haemophilus influ... [more]
UREG_BURA41.620e-5760.11Urease accessory protein ureG OS=Burkholderia ambi... [more]
UREG_BURVG2.116e-5760.11Urease accessory protein ureG OS=Burkholderia viet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02K03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836232 ID=CF836232; Name=CF836232; organism=Citrus sinensis; type=EST; length=837bp
TTTTTTTTTTTTTTTTTACAGATCAAGCAGCCACTTCAATTGCTTTATCA
TTGAGAACAAAAAGTTATCAGATGAGTTGAAACCAGAAACCTGATAAAAA
TTTTTGACGAGGACGGTTTGTGCTGAAACTAATAAAATACAAGACAACAA
ACTAAAACAACTTCAGAGAAGTGGTATCAACGCCGCTTCTTCCCTGTTGA
TGCTTCCCAAGCCTGTAAAATGTGATTCACTATTTCCTCCACACCAAGCC
CGTGCTTGACCTGAGCGAAGATAAAAGGCCCTCCATCACGCATCCGGAGT
GCATCACGCTCCATTACTGCTAAGTCAGCTCCTATTGCTGAAGCAAGGTC
AGTTTTGTTTATCACCAGAAGGTCAGCTTGGGTGATGCCTGGGCCACCTT
TCCGAGGAATTTTATCACCACCAGAAACGTCTATTATATAAATGATATAG
TCTGCAAGTTCCCTGCTGAAGTTGGCAGCTAAATTATCTCCCCCAGATTC
GCAAAGGAGTAGGTCTGCTTTGAACAAGTTAGAAAGTTCCTCGAGAGGGC
CCAGATTGATGCTGATGTCTTCACGAATTGCAGCATGAGGACATCCACCT
GTTTCCACAGCACGTATTCTCTCCTCAGGCAGAGCACCATTCCGCATCAG
GAATTCACCATCTTCTTTTGTGAAAATATCATTTGTGACAGCTGCAAGAC
TGTACTTGTCCCGCAAGAATTTACACAAAGCCAGCATTAAAGCTGTTTTC
CCAGTACCAACAGGGCCACCAATGCCAACGGTAAAAGCTCTCTCATTGAA
ATTTCTGCTGAGAATAGGCGGAGCTCTTCTGCTGAAA
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