CF836262

Overview
NameCF836262
Unique NameCF836262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 68/177 (38.42%), Postives = 89/177 (50.28%), Query Frame = -3 
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D  GL +DPET   N + E++ CRWAMLGA G   PELL + G+      W+ AG   +      +   P L   + I   WA       ++  G V    I         D  YPGG  FDPLG  +  PE   EL+ KE+K GRLAML++ G + Q I TG GP++N    +ADP
Sbjct:   80 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADP 249
[Close]
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 68/177 (38.42%), Postives = 87/177 (49.15%), Query Frame = -3 
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D   + +DPET   N + E++ CRWAMLGA G   PELL K G+      W+ AG   +      +   P L   + I   WA       ++  G +    +       G D   PGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+N    LADP
Sbjct:   81 DTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWA-----CQVVLMGLIEGYRVGGGTLGEGLDPLLPGGA-FDPLGLAD-DPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250
[Close]
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 69/177 (38.98%), Postives = 89/177 (50.28%), Query Frame = -3 
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D  GL +DPET   N + E++  RWAMLGA G   PELL++ G+      W+ AG   +      +   P L   + I   WA       ++  G V    I        TD  YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++N    LADP
Sbjct:   70 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 239
[Close]
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.729e-22
Identity = 69/177 (38.98%), Postives = 89/177 (50.28%), Query Frame = -3 
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D  GL +DPET   N + E++  RWAMLGA G   PELL + G+      W+ AG   +      +  +P L   + I   WA       +I  G +    +        TD  YPGG  FDPLG     P+   EL+ KEIKNGRLAM ++ G + Q I TG GPI+N    LADP
Sbjct:   93 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWA-----CQVILMGAIEGYRVAGGPLGEVTDPIYPGGN-FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 262
[Close]
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.729e-22
Identity = 69/174 (39.66%), Postives = 88/174 (50.57%), Query Frame = -3 
Query:  183 GLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 683
            GL +DPET   N + E++  RWAMLGA G   PELL + G+      W+ AG   +      +   P L   + I   WA       +I  G V    I        TD  YPGG  FDPLG     PE + EL+ KE+KNGRLAM ++ G + Q I TG GP++N    LADP
Sbjct:   74 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA-----TQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGLAD-DPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 240
[Close]
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 69/177 (38.98%), Postives = 87/177 (49.15%), Query Frame = -3 
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D  GL +DPET   N + E++  RWAMLGA G   PELL + G+      W+ AG   +      +   P L   + I   WA       ++  G V    I         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++N    LADP
Sbjct:   80 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA-----VQVVLMGAVEGYRIAGGPLGEVVDPLYPGGA-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
[Close]
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 68/177 (38.42%), Postives = 87/177 (49.15%), Query Frame = -3 
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D   L +DPET   N + E++ CRWAMLGA G   PELL + G+      W+ AG   +      +   P L   + I   WA       ++  G V    +         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++N    LADP
Sbjct:   82 DTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
[Close]
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 67/177 (37.85%), Postives = 89/177 (50.28%), Query Frame = -3 
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D  GL +DPET   N + E++  RWAMLGA G   PE+L+K G+      W+ AG   +      +   P L   + I   WA       ++  G V    +       G D  YPGG  FDPLG     P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI+N    +ADP
Sbjct:   78 DTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA-----VQVVLMGFVEGYRVGGGPLGEGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247
[Close]
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 67/177 (37.85%), Postives = 89/177 (50.28%), Query Frame = -3 
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D  GL +DPET   N + E++  RWAMLGA G   PE+L+K G+      W+ AG   +      +   P L   + I   WA       ++  G V    +       G D  YPGG  FDPLG     P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI+N    +ADP
Sbjct:   78 DTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA-----VQVVLMGFVEGYRVGGGPLGEGLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247
[Close]
BLAST of CF836262 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 69/177 (38.98%), Postives = 87/177 (49.15%), Query Frame = -3 
Query:  183 DPLGLGSDPETLRWNVQSEIVPCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTPPLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGPGPIDNFIAPLADP 692
            D  GL +DPET   N + E++  RWAMLGA G   PELL + G+      W+ AG   +      +   P L   + I   WA       ++  G V    I         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++N    LADP
Sbjct:   76 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA-----VQVVLMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 245
The following BLAST results are available for this feature:
BLAST of CF836262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB22_MAIZE2.089e-2238.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH2.089e-2238.42Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_CUCSA2.089e-2238.98Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PINSY2.729e-2238.98Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_SOYBN2.729e-2239.66Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ3.564e-2238.98Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_PETSP4.655e-2238.42Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_ORYSJ4.655e-2237.85Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.655e-2237.85Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ORYSJ4.655e-2238.98Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02K23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836262 ID=CF836262; Name=CF836262; organism=Citrus sinensis; type=EST; length=694bp
TCACACAAGCTTTTTGCTACTTAGAATAGAGGCAATTAATACAAGGTTCT
AATCATACAACCTTTTCCCTAAAAAAAACACCAATTCCTTTGATCTCAAG
CTTCCACTTGGCCCAAATTTCTCTCCCTTTGTTCGTCATCATCTCACTTG
GGGGGGAAGGCAGCAAAAACGGGGGCATGACCAGGATCAGCAAGGGGAGC
AATGAAATTGTCAATGGGGCCGGGGCCGGTGTAAATGTGCTGGAACCAAG
CACCCATCACAGCCAACATAGCCAATCTTCCATTCTTGATCTCCTTAGTC
CTCAGCTCCTTTACCTTCTCGGGCGAACCGGATCCCCAGCCAAGGGGGTC
AAACCAAAGCCCACCTGGGTACCCAACATCGGTGCCGGTGAGCTTGTTGT
TGGGGAAAATCGGGTCAGTGTTCACACAGCCTGGCTTTATAATGTCGGCC
CACCGTCTGCCCTCTGCCCAGCCTATGAATATCATCTCAACAATGAACAG
GGGGGGGGTGTCTGTGAAGTACTCTAGCTCCCCAGCTGTGTACCAGGATG
GAGTGTTGAGGATTCCAAGTTTTGTTAACAATTCCGGAATGAAAATTCCT
GCAGCTCCTAACATTGCCCATCTGCAGGGCACAATTTCTGATTGCACGTT
CCATCTCAGCGTCTCAGGATCAGATCCAAGACCAAGAGGATCGA
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