CF931493

Overview
NameCF931493
Unique NameCF931493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length300
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML7_ARATH (Calmodulin-like protein 7 OS=Arabidopsis thaliana GN=CML7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.172e-13
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 2
Query:    8 QEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 214
            +EE D+ EAF VFD++GDGFI+  EL+ VL  LGL +G  +   ++MI  VD + DGRV++ EF+ MM+
Sbjct:   75 EEEEDMKEAFNVFDQNGDGFITVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDGRVNYKEFRQMMK 143          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.060e-13
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 2
Query:    8 QEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 214
            +EE D+ EAF+VFD++GDGFI+  EL+ VL  +GL +G  +   ++MI  VD + DG V+F EFK MM+
Sbjct:   74 EEEEDMREAFRVFDQNGDGFITDEELRSVLASMGLKQGRTLEDCKKMISKVDVDGDGMVNFKEFKQMMR 142          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML4_ARATH (Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.053e-12
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 2
Query:    8 QEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQS 217
            +EE D+ +AF VFD+DGDGFI+  EL  V+  LGL +G  +   ++MI  VD + DGRV++ EF  MM+S
Sbjct:  119 KEEGDMRDAFNVFDQDGDGFITVEELNSVMTSLGLKQGKTLECCKEMIMQVDEDGDGRVNYKEFLQMMKS 188          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML6_ARATH (Calmodulin-like protein 6 OS=Arabidopsis thaliana GN=CML6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.796e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 2
Query:   14 EADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 214
            E D+ EAF VFD +GDGFI+  EL+ VL  LGL +G  +   ++MI  VD + DGRV++ EF+ MM+
Sbjct:   79 EEDMKEAFNVFDRNGDGFITVDELKAVLSSLGLKQGKTLEECRKMIMQVDVDGDGRVNYMEFRQMMK 145          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML5_ARATH (Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.063e-12
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 2
Query:   11 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 214
            EE D+ +AF VFD+DGDGFI+  EL+ V+  LGL +G  +   ++MI  VD + DGRV++ EF  MM+
Sbjct:  140 EEEDMKDAFNVFDQDGDGFITVEELKSVMASLGLKQGKTLDGCKKMIMQVDADGDGRVNYKEFLQMMK 207          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML28_ORYSJ (Probable calcium-binding protein CML28 OS=Oryza sativa subsp. japonica GN=CML28 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.063e-12
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 2
Query:   11 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 214
            E+  + EAF VFD++GDGFI+  EL+ VL  LGL  G      ++MI  VD + DGRVDF EFK MM+
Sbjct:   96 EDEGMREAFNVFDQNGDGFITVDELRSVLSSLGLKHGRTADDCRRMISMVDADGDGRVDFKEFKQMMR 163          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.824e-12
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 2
Query:   11 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 214
            EE D+ EAF VFD++ DGFI+  EL+ VL  LGL +G  +   ++MI  VD + DG V+F EFK MM+
Sbjct:   75 EEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMMK 142          
The following BLAST results are available for this feature:
BLAST of CF931493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CML7_ARATH6.172e-1349.28Calmodulin-like protein 7 OS=Arabidopsis thaliana ... [more]
CML2_ARATH8.060e-1349.28Calmodulin-like protein 2 OS=Arabidopsis thaliana ... [more]
CML4_ARATH1.053e-1248.57Calmodulin-like protein 4 OS=Arabidopsis thaliana ... [more]
CML6_ARATH1.796e-1249.25Calmodulin-like protein 6 OS=Arabidopsis thaliana ... [more]
CML5_ARATH3.063e-1248.53Calmodulin-like protein 5 OS=Arabidopsis thaliana ... [more]
CML28_ORYSJ3.063e-1251.47Probable calcium-binding protein CML28 OS=Oryza sa... [more]
CML3_ARATH6.824e-1250.00Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0563 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB251 similar to calcium-binding allergen Bet v 3 (acc# P43187), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931493 ID=CF931493; Name=CF931493; organism=Citrus sinensis; type=EST; length=300bp
ACTGTCGCAGGAGGAGGCCGACTTGTCGGAGGCGTTTAAGGTGTTTGATG
AGGACGGAGACGGATTCATTTCTGCACACGAGTTGCAAGTGGTTTTGGGG
AAGCTAGGCTTGACCGAAGGCAATGAAATTGCCAGAGTTCAGCAGATGAT
TGGCTCCGTTGACCGCAACCATGATGGCCGCGTTGACTTCTTCGAATTCA
AGAACATGATGCAGAGCGTTCTTGTTCGAAGTTCTTGATCTATCTTTTAT
CTTTCAAATTTTCAACTTTTAATGCCATCGTCGTTTCATGAATGTATGTG
back to top