CF931497
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NHP2_BOVIN (H/ACA ribonucleoprotein complex subunit 2 OS=Bos taurus GN=NHP2 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 5.179e-25 Identity = 51/113 (45.13%), Postives = 82/113 (72.57%), Query Frame = 3 Query: 87 ERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLV 425 ERT H+ +V+L PIA+PLA ++L+++ K +++A + K ++RGVKEV K I +G KG+ V+AG+ PI+V H+P++CE+ ++PY+Y+ SK DL A +KRPTC ++V Sbjct: 21 ERTYHE----LLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFINKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NHP2_PONAB (H/ACA ribonucleoprotein complex subunit 2 OS=Pongo abelii GN=NHP2 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.968e-24 Identity = 55/151 (36.42%), Postives = 98/151 (64.90%), Query Frame = 3 Query: 69 GSDSEAER-TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 518 G +++AE + + ++ +V+ PIA+PLA ++L+++ K +++A + K ++RGVKEV K + +G KG+ V+AG+ PI+V H+P++CE+ ++PY+Y+ SK DL A +KRPTC ++V KP D+ + Y +E+V+ L Sbjct: 10 GPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV--KP---------HDEYQEAYDECLEEVQSL 149
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NHP2_HUMAN (H/ACA ribonucleoprotein complex subunit 2 OS=Homo sapiens GN=NHP2 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.357e-24 Identity = 48/120 (40.00%), Postives = 86/120 (71.67%), Query Frame = 3 Query: 69 GSDSEAER-TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLV 425 G +++AE + + ++ +V+ PIA+PLA ++L+++ K +++A + K ++RGVKEV K + +G KG+ V+AG+ PI+V H+P++CE+ ++PY+Y+ SK DL A +KRPTC ++V Sbjct: 10 GPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NHP2_DROYA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila yakuba GN=NHP2 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 4.847e-23 Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 Query: 117 KIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKC-LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKA 482 K++ + IAKP+AGKKL+K+ KLV++A +HK L+ G+K+V +R+G G+C+ AG+++P+D++ H+P +CEE +PY Y S+ DL A KR T +LV +L E +++L A Sbjct: 33 KLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYAYTPSRADLGAAMGVKRGTVALLVRQNDEYKDLYDEVKEELSA 155
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NHP2_DROME (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila melanogaster GN=NHP2 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 4.847e-23 Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3 Query: 117 KIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKC-LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKA 482 K++ + IAKP+AGKKL+K+ KLV++A +HK L+ G+K+V +R+G G+C+ AG+++P+D++ H+P +CEE +PY Y S+ DL A KR T +LV +L E +++L A Sbjct: 33 KLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKDLYDEVKEELSA 155
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16 Identity = 44/128 (34.38%), Postives = 72/128 (56.25%), Query Frame = 3 Query: 135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 518 P A PLA LS++ + LV++A +K LK+G E K++ RG + V+A + P++++ H+P+LCE+ +VPY++V SK L A RP + Q E +LK+ + EDV++L Sbjct: 8 PKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIA---------ASITQNEGSQLKSQIQKIKEDVEKL 126
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.576e-16 Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 3 Query: 123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 497 +S+ P A PLA L+++ L LV++A+ +K L++G E K++ RG V+A + PI+++ H+P+LCE+ +VPY++V SK L A RP + T L Q + KL + L+ Sbjct: 1 MSVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: SNU13_USTMA (13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis GN=SNU13 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.739e-16 Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 3 Query: 135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 497 P A PLA L+ + L L+++A+ +K LK+G E K++ RG V+A ++ PI+++ H+P+LCE+ +VPY++V SK L A RP V T + Q + KL + L+ Sbjct: 6 PKAFPLADATLTNQILDLIQQASHYKQLKKGANEATKTLNRGICEFIVMAADVEPIEIVLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVVSASVTTNEARELQSQIQTVKLAIERLLI 126
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.739e-16 Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 3 Query: 135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTK 434 P A PLA +L+K L LV++AA +K L++G E K++ RG V+A + P+++I H+P+LCE+ +VPY++V SK+ L A RP V K Sbjct: 8 PKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIK 107
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NH2L1_DROME (NHP2-like protein 1 homolog OS=Drosophila melanogaster GN=hoip PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.739e-16 Identity = 41/128 (32.03%), Postives = 73/128 (57.03%), Query Frame = 3 Query: 135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 518 P A PLA +L+ + + L+++A + L++G E K++ RG + V+AG+ PI+++ H+P+LCE+ +VPY++V SK+ L A RP V T E +LK+ T + ++++ L Sbjct: 7 PKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTT---------NEGSQLKSQITSIQQEIERL 125 The following BLAST results are available for this feature:
BLAST of CF931497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 62
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF931497 ID=CF931497; Name=CF931497; organism=Citrus sinensis; type=EST; length=568bpback to top |