CK739485

Overview
NameCK739485
Unique NameCK739485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_YERPP (Glycine cleavage system H protein OS=Yersinia pestis (strain Pestoides F) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  101 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPY 385
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPY 97          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_YERPN (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  101 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPY 385
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPY 97          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_YERPG (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  101 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPY 385
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPY 97          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_YERPE (Glycine cleavage system H protein OS=Yersinia pestis GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  101 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPY 385
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPY 97          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_YERPB (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  101 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPY 385
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPY 97          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_YERPA (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  101 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPY 385
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPY 97          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_YERP3 (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  101 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPY 385
            S+V   LKYA SHEWV+ +G  V +VGIT+HAQ+ LG++VFV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPY 97          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_LARHH (Glycine cleavage system H protein OS=Laribacter hongkongensis (strain HLHK9) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 53/96 (55.21%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  101 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPY 385
            S++   LKY +SHEWV+ EG  V TVG+T HAQ+ LG++V++ELP  G  + +G G GVVESVKA SDV +PI+GEV+EVN+ L   P  VN+ PY
Sbjct:    2 SNIPADLKYVASHEWVRDEGDGVVTVGVTFHAQELLGDIVYIELPAVGQVLAEGDGAGVVESVKAASDVYAPIAGEVLEVNADLESAPETVNADPY 97          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_CHRSD (Glycine cleavage system H protein OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  101 SSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            S +   L+Y  SHEWV   G    T+GITDHAQ+ LG+VVFVELPETG  +  G  FGV+ESVKA SD+  P+SGE+I VN  L   P  VN +PYE
Sbjct:    2 SHIPANLRYTDSHEWVLDNGDGTVTIGITDHAQEALGDVVFVELPETGRELDAGEEFGVIESVKAASDLYLPLSGEIIAVNESLEDAPETVNDNPYE 98          
BLAST of CK739485 vs. ExPASy Swiss-Prot
Match: GCSH_BREBN (Glycine cleavage system H protein OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.007e-23
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  119 LKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYE 388
            L+Y+  HEWV+ EG+ A +GIT  AQ  LG++VFVELPE GA+++Q   FG VESVK  S++ +P++G+V+EVN +L   P LVNSSPYE
Sbjct:    7 LRYSEEHEWVRVEGNKAYIGITSFAQAELGDIVFVELPEVGATIQQDEPFGSVESVKTVSELYAPVTGKVVEVNGELEDAPELVNSSPYE 96          
The following BLAST results are available for this feature:
BLAST of CK739485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 451
Match NameE-valueIdentityDescription
GCSH_YERPP1.007e-2356.25Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPN1.007e-2356.25Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPG1.007e-2356.25Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPE1.007e-2356.25Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPB1.007e-2356.25Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_YERPA1.007e-2356.25Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERP31.007e-2356.25Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_LARHH1.007e-2355.21Glycine cleavage system H protein OS=Laribacter ho... [more]
GCSH_CHRSD1.007e-2355.67Glycine cleavage system H protein OS=Chromohalobac... [more]
GCSH_BREBN1.007e-2355.56Glycine cleavage system H protein OS=Brevibacillus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6323 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739485 ID=CK739485; Name=CK739485; organism=Citrus sinensis; type=EST; length=390bp
ATAAGGCATGGCACTCAGAATGTGGGCGTCGTCTACTGCCAATGCTCTTA
GAATTTCCTGCGCCTCCAAAACTCCTGCATTTGCCCTCTCCAGATGCTTC
TCTTCTGTCTTGGATGGGTTGAAATATGCATCCTCGCATGAATGGGTGAA
GCATGAAGGCTCTGTGGCTACTGTTGGCATCACTGATCATGCCCAGGATC
ATCTTGGAGAAGTAGTGTTTGTGGAGCTGCCAGAAACTGGTGCCTCAGTC
AAACAAGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAAGCAACCAGTGA
CGTTAATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAACTCCAAGCTCA
CCCAAACGCCTGGCTTGGTCAATTCAAGCCCATATGAAGA
back to top