CK739497

Overview
NameCK739497
Unique NameCK739497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.105e-56
Identity = 89/128 (69.53%), Postives = 111/128 (86.72%), Query Frame = 2
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + V+VKD++RG VA +SK+DP   AA+FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP+ PM VE F+DYPPLGRFAVRDM QTVAVGVIK+
Sbjct:  312 KNVSVKDIRRGNVAGDSKNDPPVGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKA 439          

HSP 2 Score: 48.9062 bits (115), Expect = 3.105e-56
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHE L + +PGDNVGFNVKN
Sbjct:  288 VKSVEMHHEQLAQGVPGDNVGFNVKN 313          
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 4.048e-56
Identity = 89/128 (69.53%), Postives = 112/128 (87.50%), Query Frame = 2
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + V+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRS K +E  PKF+K+GD+ +VKM+P+ PM VE ++DYPPLGRFAVRDM QTVAVGVIK+
Sbjct:  311 KNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKA 437          

HSP 2 Score: 51.6026 bits (122), Expect = 4.048e-56
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHE L E LPGDNVGFNVKN
Sbjct:  287 VKSVEMHHETLTEGLPGDNVGFNVKN 312          
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 5.276e-56
Identity = 88/127 (69.29%), Postives = 111/127 (87.40%), Query Frame = 2
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIK 454
            + V+VKD++RG V S+SK+DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPT P+ VE F+DY PLGRFAVRDM QTVAVGVIK
Sbjct:  313 KNVSVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIK 439          

HSP 2 Score: 48.9062 bits (115), Expect = 5.276e-56
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHE+L EA PGDNVGFN KN
Sbjct:  289 VKSVEMHHESLPEAQPGDNVGFNEKN 314          
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.881e-56
Identity = 87/129 (67.44%), Postives = 111/129 (86.05%), Query Frame = 2
Query:   68 T*RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIK 454
            T + ++VKDL+RG+VAS+SK+DPA++  NF +QVI++NHPGQI  GYAPVLDCHT+HIA KF E+ +K+DRRSGK LE+EPKF+K+G+A +V+M+P  PM VE F+ YPPLGRFAVRDM QTVAVGVIK
Sbjct:  299 TVKNLSVKDLRRGYVASDSKNDPAKDTTNFLAQVIVLNHPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIK 427          

HSP 2 Score: 46.9802 bits (110), Expect = 6.881e-56
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 1
Query:    4 KSVEMHHEALQEALPGDNVGFNVKN 78
            KSVEMHHE+L EA PGDNVGF VKN
Sbjct:  278 KSVEMHHESLTEAEPGDNVGFTVKN 302          
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 8.968e-56
Identity = 88/128 (68.75%), Postives = 110/128 (85.94%), Query Frame = 2
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + V+VK+++RG VA +SK+DP   AA+FT+QVI+MNHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK  E  PKF+K+GD+ +VKMIP+ PM VE F+DYPPLGRFAVRDM QTVAVGVIK+
Sbjct:  312 KNVSVKEIRRGNVAGDSKNDPPMGAASFTAQVIVMNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKATESAPKFIKSGDSAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKA 439          

HSP 2 Score: 48.9062 bits (115), Expect = 8.968e-56
Identity = 22/26 (84.62%), Postives = 22/26 (84.62%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHE L E  PGDNVGFNVKN
Sbjct:  288 VKSVEMHHEQLAEGQPGDNVGFNVKN 313          
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.524e-55
Identity = 81/128 (63.28%), Postives = 108/128 (84.38%), Query Frame = 2
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + V+VK+L+RG+VA +SK +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E+ PKF+K+GDA +V ++P+ P+ VE F ++PPLGRFAVRDM QTVAVGVIK+
Sbjct:  313 KNVSVKELRRGYVAGDSKANPPKGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFAEIKEKVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKA 440          

HSP 2 Score: 55.8398 bits (133), Expect = 1.524e-55
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHEALQEA+PGDNVGFNVKN
Sbjct:  289 VKSVEMHHEALQEAVPGDNVGFNVKN 314          
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.524e-55
Identity = 86/127 (67.72%), Postives = 110/127 (86.61%), Query Frame = 2
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIK 454
            + V+VK+++RG VA +SK+DP   AA+F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E+ PKF+K+GDA +VKM+P+ PM VE F++YPPLGRFAVRDM QTVAVGVIK
Sbjct:  312 KNVSVKEIRRGNVAGDSKNDPPMGAASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLQKIDRRTGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIK 438          

HSP 2 Score: 50.0618 bits (118), Expect = 1.524e-55
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHE L E +PGDNVGFNVKN
Sbjct:  288 VKSVEMHHEQLAEGVPGDNVGFNVKN 313          
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.590e-55
Identity = 86/128 (67.19%), Postives = 109/128 (85.16%), Query Frame = 2
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + V+VK+++RG VA +SK+DP +   +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VKM+P+ PM VE F+DYPPLGRFAVRDM QTVAVGVIKS
Sbjct:  312 KNVSVKEVRRGNVAGDSKNDPPKGCESFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKS 439          

HSP 2 Score: 48.1358 bits (113), Expect = 2.590e-55
Identity = 21/26 (80.77%), Postives = 22/26 (84.62%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHH+ LQ   PGDNVGFNVKN
Sbjct:  288 VKSVEMHHQQLQAGYPGDNVGFNVKN 313          
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.590e-55
Identity = 86/127 (67.72%), Postives = 110/127 (86.61%), Query Frame = 2
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIK 454
            + V+VK+++RG VA +SK+DP   AA+F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+EL+ KIDRR+GK +E+ PKF+K+GDA +VKMIP+ PM VE F++YPPLGRFAVRDM QTVAVGVIK
Sbjct:  312 KNVSVKEIRRGNVAGDSKNDPPLGAASFDAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIK 438          

HSP 2 Score: 50.447 bits (119), Expect = 2.590e-55
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHE L E +PGDNVGFNVKN
Sbjct:  288 VKSVEMHHEQLSEGVPGDNVGFNVKN 313          
BLAST of CK739497 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 3.377e-55
Identity = 84/128 (65.62%), Postives = 109/128 (85.16%), Query Frame = 2
Query:   74 RTVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT*PMVVETFSDYPPLGRFAVRDMPQTVAVGVIKS 457
            + V+VK+L+RG+VAS+SK++PAR + +F +QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K DRR+GK  E EPKF+K+GDA M+ ++P+ P+ VE FSD+PPLGRFAVRDM QTVAVGVIKS
Sbjct:  313 KNVSVKELRRGYVASDSKNNPARGSQDFFAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDMRQTVAVGVIKS 440          

HSP 2 Score: 51.2174 bits (121), Expect = 3.377e-55
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVGFNVKN 78
            VKSVEMHHE+L++A PGDNVGFNVKN
Sbjct:  289 VKSVEMHHESLEQASPGDNVGFNVKN 314          
The following BLAST results are available for this feature:
BLAST of CK739497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_SORMA3.105e-5669.53Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A3_RHIRA4.048e-5669.53Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A4_OSCTI5.276e-5669.29Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A_STYLE6.881e-5667.44Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_TRIRE8.968e-5668.75Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A1_DROME1.524e-5563.28Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_PODAN1.524e-5567.72Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_AJECG2.590e-5567.19Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A_PODCU2.590e-5567.72Elongation factor 1-alpha OS=Podospora curvicolla ... [more]
EF1A_ARTSA3.377e-5565.63Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6335 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739497 ID=CK739497; Name=CK739497; organism=Citrus sinensis; type=EST; length=457bp
GTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGG
TGACAATGTTGGCTTCAACGTGAAGAACCGTTGCTGTCAAGGATCTCAAG
CGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGC
CAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAA
ATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAG
TTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGA
GAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGA
TTCCCACCTAGCCCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTT
GGTCGTTTTGCTGTTAGGGACATGCCTCAGACTGTTGCTGTGGGTGTTAT
CAAGAGT
back to top