CK739507

Overview
NameCK739507
Unique NameCK739507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length297
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METVS (50S ribosomal protein L14P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.569e-16
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAK L +I+VK   G + RLPSA VG +V  +VKKG P++ K V+PA+I+RQ+K ++R DG  + FEDNA VIV
Sbjct:   25 GAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIV 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METVA (50S ribosomal protein L14P OS=Methanococcus vannielii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.569e-16
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAK L +I+VK   G + RLPSA VG +V  +VKKG P++ K V+PA+I+RQ+K ++R DG  + FEDNA VIV
Sbjct:   25 GAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIV 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METJA (50S ribosomal protein L14P OS=Methanocaldococcus jannaschii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.569e-16
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAK + II+V+  KG   RLP+A VGDMV+ TVKKG P++ K V+PAV++RQRK  RR DG  + F DNA VIV
Sbjct:   25 GAKEVEIIAVRNYKGVARRLPTARVGDMVIVTVKKGTPEMRKQVLPAVVIRQRKEIRRPDGTRVKFADNAVVIV 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_THEVO (50S ribosomal protein L14P OS=Thermoplasma volcanium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.677e-16
Identity = 40/92 (43.48%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   22 DVTGFASGSNL*TVLTTPGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            ++ G   G+N+     T GA+++ +I VK   G+  R+P+A VGDM +A+VKKG P++   V+ AV++RQ++P+RR DG  + FEDNA V+V
Sbjct:    8 EIRGLPLGANIVCADNT-GARSISLIDVKAYHGKARRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVEFEDNAAVLV 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_PYRFU (50S ribosomal protein L14P OS=Pyrococcus furiosus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.677e-16
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   58 TVLTTPGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            TV    GAK + II V    G   RL SA VGDMV+ATVKKG+PD+   V+ AVI+RQRK +RR DG+ + FEDNA VIV
Sbjct:   28 TVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIV 107          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_PYRHO (50S ribosomal protein L14P OS=Pyrococcus horikoshii GN=rpl14p PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.496e-16
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   58 TVLTTPGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            TV    GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+   V+ AVI+RQRK +RR DG+ + FEDNA VIV
Sbjct:   28 TVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIV 107          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_PYRAB (50S ribosomal protein L14P OS=Pyrococcus abyssi GN=rpl14p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.496e-16
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   58 TVLTTPGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            TV    GAK + +I V    G   RL SA VGDMV+ATVKKG+PD+   V+ AVI+RQRK +RR DG+ + FEDNA VIV
Sbjct:   28 TVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRIKFEDNAAVIV 107          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METMP (50S ribosomal protein L14P OS=Methanococcus maripaludis GN=rpl14p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.496e-16
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAK L +I+VK   G + RLP+  VG MV  +VKKG P++ K V+PA+I+RQ+K +RR DG  + FEDNA VIV
Sbjct:   25 GAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYRRADGTRVKFEDNAAVIV 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_ARCFU (50S ribosomal protein L14P OS=Archaeoglobus fulgidus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.496e-16
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVI 294
            GA+ L II+VKG KG   R P+A VGD+V+ TVKKG P++ K V  AVIVRQRK +RR DG  + FEDNA VI
Sbjct:   25 GARELEIIAVKGYKGVRRRYPAAGVGDIVVVTVKKGTPEIRKQVHYAVIVRQRKEYRRPDGTRVKFEDNAAVI 97          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METM7 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.566e-16
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAK L II+VK   G + RLP+  VG MV  +VKKG P++ K V+PA+I+RQ+K ++R DG  + FEDNA VIV
Sbjct:   25 GAKELEIIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIV 98          
The following BLAST results are available for this feature:
BLAST of CK739507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RL14_METVS1.569e-1654.0550S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METVA1.569e-1654.0550S ribosomal protein L14P OS=Methanococcus vannie... [more]
RL14_METJA1.569e-1658.1150S ribosomal protein L14P OS=Methanocaldococcus j... [more]
RL14_THEVO2.677e-1643.4850S ribosomal protein L14P OS=Thermoplasma volcani... [more]
RL14_PYRFU2.677e-1657.5050S ribosomal protein L14P OS=Pyrococcus furiosus ... [more]
RL14_PYRHO3.496e-1656.2550S ribosomal protein L14P OS=Pyrococcus horikoshi... [more]
RL14_PYRAB3.496e-1656.2550S ribosomal protein L14P OS=Pyrococcus abyssi GN... [more]
RL14_METMP3.496e-1654.0550S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_ARCFU3.496e-1660.2750S ribosomal protein L14P OS=Archaeoglobus fulgid... [more]
RL14_METM74.566e-1654.0550S ribosomal protein L14P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6345 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739507 ID=CK739507; Name=CK739507; organism=Citrus sinensis; type=EST; length=297bp
ATCAACATGTAACAAGTTCATGATGTCACTGGGTTTGCCAGTGGCAGCAA
CCTGTGAACTGTGCTGACAACACCTGGGGCAAAGAACCTTTACATCATCT
CAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTT
GGAGACATGGTTATGGCTACTGTGAAGAAAGGGAAGCCTGATCTTATGAA
GAATGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAA
AGGATGGTGTCTTCATGTACTTTGAAGATAATGCAGGTGTTATTGTG
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