CK739507

Overview
NameCK739507
Unique NameCK739507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length297
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METS5 (50S ribosomal protein L14P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.964e-16
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAK   IISV G +G L R+P A VGD+VM +V+KG PD+ K    AV++RQR P+RR DG ++ F+DNA VIV
Sbjct:   31 GAKEAMIISVFGYRGALRRVPYANVGDLVMVSVRKGAPDVRKQKFKAVVIRQRMPFRRPDGTWISFDDNAVVIV 104          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METM6 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.964e-16
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAK L +I+VK   G + RLP+  VG MV  +VKKG P++ K V+PA+I+RQ+K ++R DG  + FEDNA VIV
Sbjct:   25 GAKELEVIAVKNYTGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIV 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METM5 (50S ribosomal protein L14P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.789e-16
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GAK L +I+VK   G + RLP+  VG MV  +VKKG P++ K V+PA+I+RQ+K ++R DG  + FEDNA VIV
Sbjct:   25 GAKELEVIAVKNYVGTVRRLPAGGVGHMVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIV 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_HALSA (50S ribosomal protein L14P OS=Halobacterium salinarium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.789e-16
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   22 DVTGFASGSNL*TVLTTPGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            D+T      +L T     GA+ L I SV G +GR NR P A +GD +  +V KG P++ + V+ AV+VRQRKP RR DG  + FEDNA VI+
Sbjct:    7 DITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVII 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_HALS3 (50S ribosomal protein L14P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.789e-16
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   22 DVTGFASGSNL*TVLTTPGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            D+T      +L T     GA+ L I SV G +GR NR P A +GD +  +V KG P++ + V+ AV+VRQRKP RR DG  + FEDNA VI+
Sbjct:    7 DITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVII 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_HALLT (50S ribosomal protein L14P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.789e-16
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   22 DVTGFASGSNL*TVLTTPGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            DVT   S  +L T     GA+ L +ISV G  G  NR P A +GD V  +V KG P++ + V+ AV+VRQRKP RR +G  + FEDNA VI+
Sbjct:    7 DVTQGLSKGSLITCADNTGARELKVISVAGYSGTKNRHPKAGIGDKVTVSVTKGTPEMRRQVLEAVVVRQRKPIRRPNGTRVKFEDNAAVII 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_SULTO (50S ribosomal protein L14P OS=Sulfolobus tokodaii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   58 TVLTTPGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            TV    GAK   II + G KG L R+P A + D+VM +V+KG P++ K    AVIVRQR P+RR DG ++ FEDNA VIV
Sbjct:   28 TVADNSGAKEAVIIGIYGYKGVLRRIPFANIADLVMVSVRKGTPEVRKQKFKAVIVRQRMPFRRPDGTWIAFEDNAVVIV 107          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METST (50S ribosomal protein L14P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            GA+ + IISVKG KG   RL SA VGDMV+ +VKKG  D+ + V  AV+VRQ+K +RR DG+ + FEDNA VI+
Sbjct:   25 GAREVEIISVKGFKGVRRRLASAGVGDMVVISVKKGTADMRREVTTAVVVRQKKEYRRADGLRVKFEDNAAVII 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_HALMA (50S ribosomal protein L14P OS=Haloarcula marismortui GN=rpl14p PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   22 DVTGFASGSNL*TVLTTPGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIV 297
            DVT      +L T     GA+ L +ISV G  G  NR P A +GD +  +V KG P++ + V+ AV+VRQRKP RR DG  + FEDNA VIV
Sbjct:    7 DVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIV 98          
BLAST of CK739507 vs. ExPASy Swiss-Prot
Match: RL14_METTP (50S ribosomal protein L14P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.329e-15
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   76 GAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLMKNVMPAVIVRQRKPWRRKDGVFMYFEDNAGVI 294
            GA+ L+++SVK  +G  NR P A +GDMV+ +VKKG P++ K +  AVI+RQ+K +RR DG+ + FEDNA VI
Sbjct:   25 GARTLFVVSVKKYRGVKNRQPCAGIGDMVVVSVKKGTPEMRKQIFNAVIIRQKKEFRRPDGLRVKFEDNAAVI 97          
The following BLAST results are available for this feature:
BLAST of CK739507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RL14_METS55.964e-1655.4150S ribosomal protein L14P OS=Metallosphaera sedul... [more]
RL14_METM65.964e-1652.7050S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_METM57.789e-1652.7050S ribosomal protein L14P OS=Methanococcus maripa... [more]
RL14_HALSA7.789e-1646.7450S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_HALS37.789e-1646.7450S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_HALLT7.789e-1647.8350S ribosomal protein L14P OS=Halorubrum lacusprof... [more]
RL14_SULTO1.017e-1552.5050S ribosomal protein L14P OS=Sulfolobus tokodaii ... [more]
RL14_METST1.017e-1556.7650S ribosomal protein L14P OS=Methanosphaera stadt... [more]
RL14_HALMA1.017e-1547.8350S ribosomal protein L14P OS=Haloarcula marismort... [more]
RL14_METTP1.329e-1552.0550S ribosomal protein L14P OS=Methanosaeta thermop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6345 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739507 ID=CK739507; Name=CK739507; organism=Citrus sinensis; type=EST; length=297bp
ATCAACATGTAACAAGTTCATGATGTCACTGGGTTTGCCAGTGGCAGCAA
CCTGTGAACTGTGCTGACAACACCTGGGGCAAAGAACCTTTACATCATCT
CAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTT
GGAGACATGGTTATGGCTACTGTGAAGAAAGGGAAGCCTGATCTTATGAA
GAATGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAA
AGGATGGTGTCTTCATGTACTTTGAAGATAATGCAGGTGTTATTGTG
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